Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 20 - 89 | 1.2e-08 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 406 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 44 |
| AgsI | TTSAA | 1 cut(s) | 254 |
| AluBI | AGCT | 5 cut(s) | 9, 143, 176, 320, 396 |
| AluI | AGCT | 5 cut(s) | 9, 143, 176, 320, 396 |
| ApeKI | GCWGC | 2 cut(s) | 140, 206 |
| AsuHPI | GGTGA | 1 cut(s) | 24 |
| BbvI | GCAGC | 2 cut(s) | 152, 193 |
| BccI | CCATC | 3 cut(s) | 21, 59, 424 |
| BfaI | CTAG | 3 cut(s) | 6, 288, 321 |
| BglII | AGATCT | 1 cut(s) | 385 |
| BisI | GCNGC | 2 cut(s) | 141, 207 |
| BlpI | GCTNAGC | 1 cut(s) | 177 |
| BlsI | GCNGC | 2 cut(s) | 142, 208 |
| BmsI | GCATC | 1 cut(s) | 57 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 44 |
| Bse1I | ACTGG | 1 cut(s) | 216 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 44 |
| BseMII | CTCAG | 1 cut(s) | 315 |
| BseNI | ACTGG | 1 cut(s) | 216 |
| BseRI | GAGGAG | 1 cut(s) | 111 |
| BseXI | GCAGC | 2 cut(s) | 152, 193 |
| BsgI | GTGCAG | 1 cut(s) | 192 |
| Bsh1285I | CGRYCG | 1 cut(s) | 276 |
| BsiEI | CGRYCG | 1 cut(s) | 276 |
| BslFI | GGGAC | 1 cut(s) | 141 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 44 |
| BsmFI | GGGAC | 1 cut(s) | 141 |
| Bsp143I | GATC | 2 cut(s) | 273, 385 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 177 |
| BspCNI | CTCAG | 1 cut(s) | 314 |
| BsrI | ACTGG | 1 cut(s) | 216 |
| BssMI | GATC | 2 cut(s) | 273, 385 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 146 |
| BstDEI | CTNAG | 4 cut(s) | 177, 301, 380, 392 |
| BstEII | GGTNACC | 1 cut(s) | 30 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 42 |
| BstKTI | GATC | 2 cut(s) | 276, 388 |
| BstMBI | GATC | 2 cut(s) | 273, 385 |
| BstMCI | CGRYCG | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 140, 146, 203, 326 |
| BstNSI | RCATGY | 1 cut(s) | 134 |
| BstPI | GGTNACC | 1 cut(s) | 30 |
| BstV1I | GCAGC | 2 cut(s) | 152, 193 |
| BstX2I | RGATCY | 1 cut(s) | 385 |
| BstYI | RGATCY | 1 cut(s) | 385 |
| BtsIMutI | CAGTG | 1 cut(s) | 209 |
| Csp6I | GTAC | 1 cut(s) | 405 |
| CviAII | CATG | 3 cut(s) | 131, 155, 326 |
| CviJI | RGCY | 7 cut(s) | 9, 143, 176, 206, 234, 320, 396 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 143, 176, 206, 234, 320, 396 |
| CviQI | GTAC | 1 cut(s) | 405 |
| DdeI | CTNAG | 4 cut(s) | 177, 301, 380, 392 |
| DpnI | GATC | 2 cut(s) | 275, 387 |
| DpnII | GATC | 2 cut(s) | 273, 385 |
| Eco91I | GGTNACC | 1 cut(s) | 30 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 42 |
| EcoO65I | GGTNACC | 1 cut(s) | 30 |
| FaeI | CATG | 3 cut(s) | 134, 158, 329 |
| FaqI | GGGAC | 1 cut(s) | 141 |
| FatI | CATG | 3 cut(s) | 130, 154, 325 |
| Fnu4HI | GCNGC | 2 cut(s) | 141, 207 |
| Fsp4HI | GCNGC | 2 cut(s) | 141, 207 |
| FspBI | CTAG | 3 cut(s) | 6, 288, 321 |
| GluI | GCNGC | 2 cut(s) | 141, 207 |
| Hin1II | CATG | 3 cut(s) | 134, 158, 329 |
| HindIII | AAGCTT | 1 cut(s) | 394 |
| HinfI | GANTC | 2 cut(s) | 335, 362 |
| HphI | GGTGA | 1 cut(s) | 24 |
| HpyAV | CCTTC | 2 cut(s) | 86, 98 |
| HpyCH4V | TGCA | 3 cut(s) | 140, 209, 264 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 140, 146, 203, 326 |
| HpyF3I | CTNAG | 4 cut(s) | 177, 301, 380, 392 |
| Hsp92II | CATG | 3 cut(s) | 134, 158, 329 |
| Kzo9I | GATC | 2 cut(s) | 273, 385 |
| LpnPI | CCDG | 3 cut(s) | 110, 197, 215 |
| Lsp1109I | GCAGC | 2 cut(s) | 152, 193 |
| LweI | GCATC | 1 cut(s) | 57 |
| MaeI | CTAG | 3 cut(s) | 6, 288, 321 |
| MaeIII | GTNAC | 2 cut(s) | 30, 189 |
| MalI | GATC | 2 cut(s) | 275, 387 |
| MboI | GATC | 2 cut(s) | 273, 385 |
| MboII | GAAGA | 1 cut(s) | 380 |
| MflI | RGATCY | 1 cut(s) | 385 |
| MluCI | AATT | 1 cut(s) | 169 |
| MnlI | CCTC | 2 cut(s) | 89, 235 |
| MseI | TTAA | 1 cut(s) | 113 |
| MslI | CAYNNNNRTG | 1 cut(s) | 214 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 140, 146, 203, 326 |
| NdeII | GATC | 2 cut(s) | 273, 385 |
| NlaIII | CATG | 3 cut(s) | 134, 158, 329 |
| NmuCI | GTSAC | 1 cut(s) | 30 |
| NspI | RCATGY | 1 cut(s) | 134 |
| PfeI | GAWTC | 2 cut(s) | 335, 362 |
| PkrI | GCNGC | 2 cut(s) | 142, 208 |
| Ple19I | CGATCG | 1 cut(s) | 276 |
| PspEI | GGTNACC | 1 cut(s) | 30 |
| PsuI | RGATCY | 1 cut(s) | 385 |
| PvuI | CGATCG | 1 cut(s) | 276 |
| RsaI | GTAC | 1 cut(s) | 406 |
| RsaNI | GTAC | 1 cut(s) | 405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 214 |
| SaqAI | TTAA | 1 cut(s) | 113 |
| SatI | GCNGC | 2 cut(s) | 141, 207 |
| Sau3AI | GATC | 2 cut(s) | 273, 385 |
| SetI | ASST | 8 cut(s) | 11, 40, 78, 109, 145, 178, 322, 398 |
| SfaNI | GCATC | 1 cut(s) | 57 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 214 |
| SmlI | CTYRAG | 1 cut(s) | 42 |
| SmoI | CTYRAG | 1 cut(s) | 42 |
| Sse9I | AATT | 1 cut(s) | 169 |
| SspMI | CTAG | 3 cut(s) | 6, 288, 321 |
| TaqI | TCGA | 2 cut(s) | 272, 276 |
| TasI | AATT | 1 cut(s) | 169 |
| TfiI | GAWTC | 2 cut(s) | 335, 362 |
| Tru1I | TTAA | 1 cut(s) | 113 |
| Tru9I | TTAA | 1 cut(s) | 113 |
| TscAI | CASTG | 1 cut(s) | 216 |
| TseFI | GTSAC | 1 cut(s) | 30 |
| TseI | GCWGC | 2 cut(s) | 140, 206 |
| Tsp45I | GTSAC | 1 cut(s) | 30 |
| TspDTI | ATGAA | 2 cut(s) | 99, 105 |
| TspRI | CASTG | 1 cut(s) | 216 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 42 |
| XceI | RCATGY | 1 cut(s) | 134 |
| XspI | CTAG | 3 cut(s) | 6, 288, 321 |