ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 553 |
| Acc36I | ACCTGC | 1 cut(s) | 553 |
| AccIII | TCCGGA | 1 cut(s) | 376 |
| AciI | CCGC | 1 cut(s) | 70 |
| AcsI | RAATTY | 1 cut(s) | 235 |
| AfaI | GTAC | 2 cut(s) | 472, 590 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 276, 416 |
| AgsI | TTSAA | 1 cut(s) | 623 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 319, 351 |
| AluBI | AGCT | 7 cut(s) | 15, 26, 146, 422, 503, 566, 607 |
| AluI | AGCT | 7 cut(s) | 15, 26, 146, 422, 503, 566, 607 |
| Alw21I | GWGCWC | 2 cut(s) | 424, 609 |
| Alw26I | GTCTC | 1 cut(s) | 635 |
| Aor13HI | TCCGGA | 1 cut(s) | 376 |
| AoxI | GGCC | 1 cut(s) | 569 |
| ApoI | RAATTY | 1 cut(s) | 235 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 239, 334 |
| AspS9I | GGNCC | 1 cut(s) | 439 |
| AsuHPI | GGTGA | 1 cut(s) | 353 |
| AsuNHI | GCTAGC | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 439 |
| BanII | GRGCYC | 2 cut(s) | 424, 609 |
| Bbv12I | GWGCWC | 2 cut(s) | 424, 609 |
| BccI | CCATC | 3 cut(s) | 274, 318, 363 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 593, 627 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BcoDI | GTCTC | 1 cut(s) | 635 |
| BfaI | CTAG | 5 cut(s) | 23, 297, 411, 504, 567 |
| BfuAI | ACCTGC | 1 cut(s) | 553 |
| BlpI | GCTNAGC | 1 cut(s) | 308 |
| Bme18I | GGWCC | 1 cut(s) | 439 |
| BmgT120I | GGNCC | 1 cut(s) | 439 |
| BmiI | GGNNCC | 1 cut(s) | 534 |
| BmrI | ACTGGG | 1 cut(s) | 385 |
| BmtI | GCTAGC | 1 cut(s) | 26 |
| BmuI | ACTGGG | 1 cut(s) | 385 |
| Bpu10I | CCTNAGC | 1 cut(s) | 96 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 308 |
| BsaJI | CCNNGG | 1 cut(s) | 313 |
| BsaWI | WCCGGW | 1 cut(s) | 376 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 319, 349 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 276, 416 |
| Bse1I | ACTGG | 1 cut(s) | 391 |
| BseAI | TCCGGA | 1 cut(s) | 376 |
| BseDI | CCNNGG | 1 cut(s) | 313 |
| BseGI | GGATG | 2 cut(s) | 266, 385 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 276, 416 |
| BseMII | CTCAG | 3 cut(s) | 299, 540, 630 |
| BseNI | ACTGG | 1 cut(s) | 391 |
| BseRI | GAGGAG | 2 cut(s) | 396, 525 |
| BsgI | GTGCAG | 3 cut(s) | 197, 525, 599 |
| BshFI | GGCC | 1 cut(s) | 571 |
| BsiHKAI | GWGCWC | 2 cut(s) | 424, 609 |
| BsiSI | CCGG | 1 cut(s) | 377 |
| BslFI | GGGAC | 1 cut(s) | 381 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 276, 416 |
| BsmAI | GTCTC | 1 cut(s) | 635 |
| BsmFI | GGGAC | 1 cut(s) | 381 |
| BsnI | GGCC | 1 cut(s) | 571 |
| Bsp1286I | GDGCHC | 2 cut(s) | 424, 609 |
| Bsp13I | TCCGGA | 1 cut(s) | 376 |
| Bsp143I | GATC | 1 cut(s) | 343 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 308 |
| BspACI | CCGC | 1 cut(s) | 70 |
| BspANI | GGCC | 1 cut(s) | 571 |
| BspCNI | CTCAG | 3 cut(s) | 300, 541, 631 |
| BspEI | TCCGGA | 1 cut(s) | 376 |
| BspLI | GGNNCC | 1 cut(s) | 534 |
| BspMI | ACCTGC | 1 cut(s) | 553 |
| BspOI | GCTAGC | 1 cut(s) | 26 |
| BsrI | ACTGG | 1 cut(s) | 391 |
| BssECI | CCNNGG | 1 cut(s) | 313 |
| BssMI | GATC | 1 cut(s) | 343 |
| BssT1I | CCWWGG | 1 cut(s) | 313 |
| Bst4CI | ACNGT | 2 cut(s) | 87, 488 |
| Bst6I | CTCTTC | 1 cut(s) | 406 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 153 |
| BstDEI | CTNAG | 4 cut(s) | 96, 308, 549, 639 |
| BstF5I | GGATG | 2 cut(s) | 266, 385 |
| BstKTI | GATC | 1 cut(s) | 346 |
| BstMAI | GTCTC | 1 cut(s) | 635 |
| BstMBI | GATC | 1 cut(s) | 343 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 152, 539, 577 |
| BsuRI | GGCC | 1 cut(s) | 571 |
| BtsCI | GGATG | 2 cut(s) | 266, 385 |
| BtsIMutI | CAGTG | 2 cut(s) | 398, 493 |
| BveI | ACCTGC | 1 cut(s) | 553 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 153 |
| Cfr13I | GGNCC | 1 cut(s) | 439 |
| Csp6I | GTAC | 2 cut(s) | 471, 589 |
| CviAII | CATG | 3 cut(s) | 75, 101, 599 |
| CviQI | GTAC | 2 cut(s) | 471, 589 |
| DdeI | CTNAG | 4 cut(s) | 96, 308, 549, 639 |
| DpnI | GATC | 1 cut(s) | 345 |
| DpnII | GATC | 1 cut(s) | 343 |
| Eam1104I | CTCTTC | 1 cut(s) | 406 |
| EarI | CTCTTC | 1 cut(s) | 406 |
| Ecl136II | GAGCTC | 2 cut(s) | 422, 607 |
| Eco130I | CCWWGG | 1 cut(s) | 313 |
| Eco147I | AGGCCT | 1 cut(s) | 571 |
| Eco24I | GRGCYC | 2 cut(s) | 424, 609 |
| Eco47I | GGWCC | 1 cut(s) | 439 |
| Eco53kI | GAGCTC | 2 cut(s) | 422, 607 |
| EcoICRI | GAGCTC | 2 cut(s) | 422, 607 |
| EcoT14I | CCWWGG | 1 cut(s) | 313 |
| EcoT38I | GRGCYC | 2 cut(s) | 424, 609 |
| ErhI | CCWWGG | 1 cut(s) | 313 |
| FaeI | CATG | 3 cut(s) | 78, 104, 602 |
| FaqI | GGGAC | 1 cut(s) | 381 |
| FatI | CATG | 3 cut(s) | 74, 100, 598 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| FokI | GGATG | 2 cut(s) | 253, 392 |
| FriOI | GRGCYC | 2 cut(s) | 424, 609 |
| FspBI | CTAG | 5 cut(s) | 23, 297, 411, 504, 567 |
| HaeIII | GGCC | 1 cut(s) | 571 |
| HapII | CCGG | 1 cut(s) | 377 |
| Hin1II | CATG | 3 cut(s) | 78, 104, 602 |
| HincII | GTYRAC | 1 cut(s) | 585 |
| HindII | GTYRAC | 1 cut(s) | 585 |
| HinfI | GANTC | 2 cut(s) | 124, 373 |
| HpaII | CCGG | 1 cut(s) | 377 |
| HphI | GGTGA | 1 cut(s) | 353 |
| Hpy166II | GTNNAC | 1 cut(s) | 585 |
| Hpy188I | TCNGA | 2 cut(s) | 195, 348 |
| Hpy188III | TCNNGA | 2 cut(s) | 377, 559 |
| Hpy8I | GTNNAC | 1 cut(s) | 585 |
| HpyAV | CCTTC | 3 cut(s) | 98, 604, 617 |
| HpyCH4III | ACNGT | 2 cut(s) | 87, 488 |
| HpyCH4IV | ACGT | 2 cut(s) | 473, 587 |
| HpyCH4V | TGCA | 5 cut(s) | 178, 200, 491, 542, 580 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 152, 539, 577 |
| HpyF3I | CTNAG | 4 cut(s) | 96, 308, 549, 639 |
| HpySE526I | ACGT | 2 cut(s) | 473, 587 |
| Hsp92II | CATG | 3 cut(s) | 78, 104, 602 |
| Kpn2I | TCCGGA | 1 cut(s) | 376 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 1 cut(s) | 343 |
| LmnI | GCTCC | 3 cut(s) | 419, 427, 538 |
| LpnPI | CCDG | 8 cut(s) | 15, 146, 324, 390, 404, 544, 552, 558 |
| MaeI | CTAG | 5 cut(s) | 23, 297, 411, 504, 567 |
| MaeII | ACGT | 2 cut(s) | 473, 587 |
| MaeIII | GTNAC | 1 cut(s) | 413 |
| MalI | GATC | 1 cut(s) | 345 |
| MboI | GATC | 1 cut(s) | 343 |
| MboII | GAAGA | 3 cut(s) | 119, 232, 393 |
| MhlI | GDGCHC | 2 cut(s) | 424, 609 |
| MluCI | AATT | 6 cut(s) | 139, 187, 235, 251, 330, 429 |
| MmeI | TCCRAC | 1 cut(s) | 146 |
| MnlI | CCTC | 6 cut(s) | 39, 162, 409, 417, 430, 546 |
| MroI | TCCGGA | 1 cut(s) | 376 |
| MroXI | GAANNNNTTC | 2 cut(s) | 239, 334 |
| MseI | TTAA | 1 cut(s) | 120 |
| MslI | CAYNNNNRTG | 1 cut(s) | 105 |
| MspI | CCGG | 1 cut(s) | 377 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 152, 539, 577 |
| NdeII | GATC | 1 cut(s) | 343 |
| NheI | GCTAGC | 1 cut(s) | 22 |
| NlaIII | CATG | 3 cut(s) | 78, 104, 602 |
| NlaIV | GGNNCC | 1 cut(s) | 534 |
| NmuCI | GTSAC | 1 cut(s) | 413 |
| PaqCI | CACCTGC | 1 cut(s) | 553 |
| PceI | AGGCCT | 1 cut(s) | 571 |
| PdmI | GAANNNNTTC | 2 cut(s) | 239, 334 |
| PfeI | GAWTC | 2 cut(s) | 124, 373 |
| Psp124BI | GAGCTC | 2 cut(s) | 424, 609 |
| PspN4I | GGNNCC | 1 cut(s) | 534 |
| PspPI | GGNCC | 1 cut(s) | 439 |
| RsaI | GTAC | 2 cut(s) | 472, 590 |
| RsaNI | GTAC | 2 cut(s) | 471, 589 |
| RseI | CAYNNNNRTG | 1 cut(s) | 105 |
| SacI | GAGCTC | 2 cut(s) | 424, 609 |
| SaqAI | TTAA | 1 cut(s) | 120 |
| Sau3AI | GATC | 1 cut(s) | 343 |
| Sau96I | GGNCC | 1 cut(s) | 439 |
| SduI | GDGCHC | 2 cut(s) | 424, 609 |
| SinI | GGWCC | 1 cut(s) | 439 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 105 |
| Sse9I | AATT | 6 cut(s) | 139, 187, 235, 251, 330, 429 |
| SseBI | AGGCCT | 1 cut(s) | 571 |
| SsiI | CCGC | 1 cut(s) | 70 |
| SspMI | CTAG | 5 cut(s) | 23, 297, 411, 504, 567 |
| SstI | GAGCTC | 2 cut(s) | 424, 609 |
| StuI | AGGCCT | 1 cut(s) | 571 |
| StyI | CCWWGG | 1 cut(s) | 313 |
| TaaI | ACNGT | 2 cut(s) | 87, 488 |
| TaiI | ACGT | 2 cut(s) | 476, 590 |
| TaqI | TCGA | 1 cut(s) | 603 |
| TaqII | GACCGA | 1 cut(s) | 456 |
| TasI | AATT | 6 cut(s) | 139, 187, 235, 251, 330, 429 |
| TfiI | GAWTC | 2 cut(s) | 124, 373 |
| Tru1I | TTAA | 1 cut(s) | 120 |
| Tru9I | TTAA | 1 cut(s) | 120 |
| TscAI | CASTG | 2 cut(s) | 398, 493 |
| TseFI | GTSAC | 1 cut(s) | 413 |
| Tsp45I | GTSAC | 1 cut(s) | 413 |
| TspDTI | ATGAA | 3 cut(s) | 117, 119, 644 |
| TspGWI | ACGGA | 1 cut(s) | 432 |
| TspRI | CASTG | 2 cut(s) | 398, 493 |
| VpaK11BI | GGWCC | 1 cut(s) | 439 |
| XapI | RAATTY | 1 cut(s) | 235 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 273 |
| XmnI | GAANNNNTTC | 2 cut(s) | 239, 334 |
| XspI | CTAG | 5 cut(s) | 23, 297, 411, 504, 567 |