Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 3 cut(s) | 50, 118, 468 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AgsI | TTSAA | 2 cut(s) | 155, 332 |
| AjnI | CCWGG | 3 cut(s) | 12, 42, 72 |
| AluBI | AGCT | 1 cut(s) | 398 |
| AluI | AGCT | 1 cut(s) | 398 |
| Alw26I | GTCTC | 4 cut(s) | 44, 196, 218, 227 |
| AoxI | GGCC | 2 cut(s) | 70, 436 |
| ApeKI | GCWGC | 1 cut(s) | 22 |
| AseI | ATTAAT | 1 cut(s) | 135 |
| AspS9I | GGNCC | 3 cut(s) | 70, 299, 436 |
| AsuHPI | GGTGA | 1 cut(s) | 19 |
| AvaII | GGWCC | 1 cut(s) | 299 |
| BbvI | GCAGC | 1 cut(s) | 9 |
| BccI | CCATC | 1 cut(s) | 137 |
| BciT130I | CCWGG | 3 cut(s) | 14, 44, 74 |
| BcoDI | GTCTC | 4 cut(s) | 44, 196, 218, 227 |
| BfaI | CTAG | 2 cut(s) | 420, 440 |
| BisI | GCNGC | 1 cut(s) | 23 |
| BlsI | GCNGC | 1 cut(s) | 24 |
| Bme1390I | CCNGG | 3 cut(s) | 14, 44, 74 |
| Bme18I | GGWCC | 1 cut(s) | 299 |
| BmgT120I | GGNCC | 3 cut(s) | 70, 299, 436 |
| BmiI | GGNNCC | 2 cut(s) | 86, 437 |
| BmrFI | CCNGG | 3 cut(s) | 14, 44, 74 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 176, 208, 470 |
| BpmI | CTGGAG | 1 cut(s) | 26 |
| BsaI | GGTCTC | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 2 cut(s) | 73, 101 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 76, 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseBI | CCWGG | 3 cut(s) | 14, 44, 74 |
| BseDI | CCNNGG | 2 cut(s) | 73, 101 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseMII | CTCAG | 1 cut(s) | 259 |
| BseXI | GCAGC | 1 cut(s) | 9 |
| BseYI | CCCAGC | 1 cut(s) | 176 |
| BshFI | GGCC | 2 cut(s) | 72, 438 |
| BslFI | GGGAC | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 4 cut(s) | 44, 196, 218, 227 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsmFI | GGGAC | 1 cut(s) | 83 |
| BsnI | GGCC | 2 cut(s) | 72, 438 |
| Bso31I | GGTCTC | 1 cut(s) | 218 |
| BspANI | GGCC | 2 cut(s) | 72, 438 |
| BspCNI | CTCAG | 1 cut(s) | 258 |
| BspLI | GGNNCC | 2 cut(s) | 86, 437 |
| BspTNI | GGTCTC | 1 cut(s) | 218 |
| BssECI | CCNNGG | 2 cut(s) | 73, 101 |
| BssT1I | CCWWGG | 1 cut(s) | 101 |
| Bst2UI | CCWGG | 3 cut(s) | 14, 44, 74 |
| Bst4CI | ACNGT | 1 cut(s) | 30 |
| BstC8I | GCNNGC | 1 cut(s) | 89 |
| BstDEI | CTNAG | 2 cut(s) | 245, 474 |
| BstMAI | GTCTC | 4 cut(s) | 44, 196, 218, 227 |
| BstNI | CCWGG | 3 cut(s) | 14, 44, 74 |
| BstSCI | CCNGG | 3 cut(s) | 12, 42, 72 |
| BstV1I | GCAGC | 1 cut(s) | 9 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 382 |
| BsuRI | GGCC | 2 cut(s) | 72, 438 |
| Cac8I | GCNNGC | 1 cut(s) | 89 |
| Cfr13I | GGNCC | 3 cut(s) | 70, 299, 436 |
| CsiI | ACCWGGT | 1 cut(s) | 12 |
| Csp6I | GTAC | 3 cut(s) | 49, 117, 467 |
| CviAII | CATG | 1 cut(s) | 62 |
| CviJI | RGCY | 7 cut(s) | 72, 87, 374, 386, 398, 438, 445 |
| CviKI_1 | RGCY | 7 cut(s) | 72, 87, 374, 386, 398, 438, 445 |
| CviQI | GTAC | 3 cut(s) | 49, 117, 467 |
| DdeI | CTNAG | 2 cut(s) | 245, 474 |
| Eco130I | CCWWGG | 1 cut(s) | 101 |
| Eco31I | GGTCTC | 1 cut(s) | 218 |
| Eco47I | GGWCC | 1 cut(s) | 299 |
| EcoO109I | RGGNCCY | 1 cut(s) | 436 |
| EcoRII | CCWGG | 3 cut(s) | 12, 42, 72 |
| EcoT14I | CCWWGG | 1 cut(s) | 101 |
| ErhI | CCWWGG | 1 cut(s) | 101 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 1 cut(s) | 65 |
| FaiI | YATR | 5 cut(s) | 63, 285, 309, 360, 390 |
| FaqI | GGGAC | 1 cut(s) | 83 |
| FatI | CATG | 1 cut(s) | 61 |
| Fnu4HI | GCNGC | 1 cut(s) | 23 |
| Fsp4HI | GCNGC | 1 cut(s) | 23 |
| FspBI | CTAG | 2 cut(s) | 420, 440 |
| GluI | GCNGC | 1 cut(s) | 23 |
| GsaI | CCCAGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 26 |
| HaeIII | GGCC | 2 cut(s) | 72, 438 |
| Hin1II | CATG | 1 cut(s) | 65 |
| HinfI | GANTC | 2 cut(s) | 239, 273 |
| HphI | GGTGA | 1 cut(s) | 19 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 483 |
| Hpy188I | TCNGA | 1 cut(s) | 222 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 483 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4III | ACNGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 1 cut(s) | 149 |
| HpyF3I | CTNAG | 2 cut(s) | 245, 474 |
| Hsp92II | CATG | 1 cut(s) | 65 |
| LmnI | GCTCC | 1 cut(s) | 84 |
| Lsp1109I | GCAGC | 1 cut(s) | 9 |
| MabI | ACCWGGT | 1 cut(s) | 12 |
| MaeI | CTAG | 2 cut(s) | 420, 440 |
| MboII | GAAGA | 3 cut(s) | 320, 405, 408 |
| MlyI | GAGTC | 1 cut(s) | 282 |
| MmeI | TCCRAC | 1 cut(s) | 473 |
| MnlI | CCTC | 8 cut(s) | 48, 74, 120, 160, 174, 178, 203, 456 |
| MseI | TTAA | 2 cut(s) | 135, 490 |
| MspR9I | CCNGG | 3 cut(s) | 14, 44, 74 |
| MvaI | CCWGG | 3 cut(s) | 14, 44, 74 |
| NlaIII | CATG | 1 cut(s) | 65 |
| NlaIV | GGNNCC | 2 cut(s) | 86, 437 |
| PfeI | GAWTC | 1 cut(s) | 239 |
| PfoI | TCCNGGA | 1 cut(s) | 42 |
| PkrI | GCNGC | 1 cut(s) | 24 |
| PleI | GAGTC | 1 cut(s) | 281 |
| PpsI | GAGTC | 1 cut(s) | 281 |
| PshBI | ATTAAT | 1 cut(s) | 135 |
| Psp6I | CCWGG | 3 cut(s) | 12, 42, 72 |
| PspFI | CCCAGC | 1 cut(s) | 176 |
| PspGI | CCWGG | 3 cut(s) | 12, 42, 72 |
| PspN4I | GGNNCC | 2 cut(s) | 86, 437 |
| PspPI | GGNCC | 3 cut(s) | 70, 299, 436 |
| RsaI | GTAC | 3 cut(s) | 50, 118, 468 |
| RsaNI | GTAC | 3 cut(s) | 49, 117, 467 |
| SaqAI | TTAA | 2 cut(s) | 135, 490 |
| SatI | GCNGC | 1 cut(s) | 23 |
| Sau96I | GGNCC | 3 cut(s) | 70, 299, 436 |
| SchI | GAGTC | 1 cut(s) | 282 |
| ScrFI | CCNGG | 3 cut(s) | 14, 44, 74 |
| SexAI | ACCWGGT | 1 cut(s) | 12 |
| SinI | GGWCC | 1 cut(s) | 299 |
| SspMI | CTAG | 2 cut(s) | 420, 440 |
| StyD4I | CCNGG | 3 cut(s) | 12, 42, 72 |
| StyI | CCWWGG | 1 cut(s) | 101 |
| TaaI | ACNGT | 1 cut(s) | 30 |
| TatI | WGTACW | 2 cut(s) | 116, 466 |
| TfiI | GAWTC | 1 cut(s) | 239 |
| Tru1I | TTAA | 2 cut(s) | 135, 490 |
| Tru9I | TTAA | 2 cut(s) | 135, 490 |
| TseI | GCWGC | 1 cut(s) | 22 |
| TspDTI | ATGAA | 2 cut(s) | 283, 314 |
| VpaK11BI | GGWCC | 1 cut(s) | 299 |
| VspI | ATTAAT | 1 cut(s) | 135 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 59, 120 |
| XspI | CTAG | 2 cut(s) | 420, 440 |