ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 160, 539 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 942 |
| AccII | CGCG | 1 cut(s) | 696 |
| AciI | CCGC | 2 cut(s) | 596, 925 |
| AclI | AACGTT | 1 cut(s) | 200 |
| AclWI | GGATC | 2 cut(s) | 304, 422 |
| AcoI | YGGCCR | 2 cut(s) | 356, 933 |
| AcsI | RAATTY | 4 cut(s) | 37, 123, 938, 972 |
| AdeI | CACNNNGTG | 1 cut(s) | 821 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 931, 942 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AgsI | TTSAA | 7 cut(s) | 36, 319, 368, 457, 622, 764, 893 |
| AhlI | ACTAGT | 1 cut(s) | 23 |
| AjnI | CCWGG | 2 cut(s) | 163, 912 |
| AluBI | AGCT | 3 cut(s) | 371, 533, 637 |
| AluI | AGCT | 3 cut(s) | 371, 533, 637 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| AlwI | GGATC | 2 cut(s) | 304, 422 |
| AoxI | GGCC | 2 cut(s) | 356, 933 |
| ApeKI | GCWGC | 2 cut(s) | 634, 674 |
| ApoI | RAATTY | 4 cut(s) | 37, 123, 938, 972 |
| AspLEI | GCGC | 2 cut(s) | 423, 696 |
| AspS9I | GGNCC | 1 cut(s) | 167 |
| AsuHPI | GGTGA | 2 cut(s) | 748, 962 |
| AvaII | GGWCC | 1 cut(s) | 167 |
| BaeGI | GKGCMC | 1 cut(s) | 544 |
| BalI | TGGCCA | 2 cut(s) | 358, 935 |
| BanI | GGYRCC | 2 cut(s) | 160, 539 |
| BauI | CACGAG | 1 cut(s) | 468 |
| BbsI | GAAGAC | 4 cut(s) | 437, 672, 716, 785 |
| BbvI | GCAGC | 2 cut(s) | 646, 686 |
| BccI | CCATC | 2 cut(s) | 167, 553 |
| BciT130I | CCWGG | 2 cut(s) | 165, 914 |
| BclI | TGATCA | 1 cut(s) | 958 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BcuI | ACTAGT | 1 cut(s) | 23 |
| BfaI | CTAG | 3 cut(s) | 24, 323, 988 |
| BfmI | CTRYAG | 1 cut(s) | 632 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BisI | GCNGC | 2 cut(s) | 635, 675 |
| BlsI | GCNGC | 2 cut(s) | 636, 676 |
| Bme1390I | CCNGG | 2 cut(s) | 165, 914 |
| Bme18I | GGWCC | 1 cut(s) | 167 |
| BmgT120I | GGNCC | 1 cut(s) | 167 |
| BmiI | GGNNCC | 3 cut(s) | 162, 465, 541 |
| BmrFI | CCNGG | 2 cut(s) | 165, 914 |
| BmsI | GCATC | 2 cut(s) | 157, 913 |
| BpiI | GAAGAC | 4 cut(s) | 437, 672, 716, 785 |
| BsaAI | YACGTR | 2 cut(s) | 482, 873 |
| BsaJI | CCNNGG | 1 cut(s) | 682 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 931, 942 |
| Bse1I | ACTGG | 2 cut(s) | 806, 983 |
| BseBI | CCWGG | 2 cut(s) | 165, 914 |
| BseDI | CCNNGG | 1 cut(s) | 682 |
| BseGI | GGATG | 4 cut(s) | 49, 148, 230, 841 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 931, 942 |
| BseMII | CTCAG | 2 cut(s) | 723, 744 |
| BseNI | ACTGG | 2 cut(s) | 806, 983 |
| BseRI | GAGGAG | 1 cut(s) | 620 |
| BseSI | GKGCMC | 1 cut(s) | 544 |
| BseXI | GCAGC | 2 cut(s) | 646, 686 |
| Bsh1236I | CGCG | 1 cut(s) | 696 |
| BshFI | GGCC | 2 cut(s) | 358, 935 |
| BshNI | GGYRCC | 2 cut(s) | 160, 539 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 931, 942 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsmBI | CGTCTC | 1 cut(s) | 277 |
| BsnI | GGCC | 2 cut(s) | 358, 935 |
| Bsp1286I | GDGCHC | 1 cut(s) | 544 |
| Bsp143I | GATC | 3 cut(s) | 296, 414, 958 |
| BspACI | CCGC | 2 cut(s) | 596, 925 |
| BspANI | GGCC | 2 cut(s) | 358, 935 |
| BspCNI | CTCAG | 2 cut(s) | 724, 745 |
| BspFNI | CGCG | 1 cut(s) | 696 |
| BspHI | TCATGA | 1 cut(s) | 588 |
| BspLI | GGNNCC | 3 cut(s) | 162, 465, 541 |
| BspMAI | CTGCAG | 1 cut(s) | 636 |
| BspPI | GGATC | 2 cut(s) | 304, 422 |
| BspT107I | GGYRCC | 2 cut(s) | 160, 539 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BsrI | ACTGG | 2 cut(s) | 806, 983 |
| BssECI | CCNNGG | 1 cut(s) | 682 |
| BssMI | GATC | 3 cut(s) | 296, 414, 958 |
| BssSI | CACGAG | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 1 cut(s) | 682 |
| Bst2BI | CACGAG | 1 cut(s) | 468 |
| Bst2UI | CCWGG | 2 cut(s) | 165, 914 |
| Bst4CI | ACNGT | 1 cut(s) | 119 |
| Bst6I | CTCTTC | 1 cut(s) | 566 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstBAI | YACGTR | 2 cut(s) | 482, 873 |
| BstC8I | GCNNGC | 1 cut(s) | 829 |
| BstDEI | CTNAG | 4 cut(s) | 670, 732, 753, 818 |
| BstF5I | GGATG | 4 cut(s) | 49, 148, 230, 841 |
| BstFNI | CGCG | 1 cut(s) | 696 |
| BstHHI | GCGC | 2 cut(s) | 423, 696 |
| BstKTI | GATC | 3 cut(s) | 299, 417, 961 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 3 cut(s) | 296, 414, 958 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 484, 539 |
| BstNI | CCWGG | 2 cut(s) | 165, 914 |
| BstSCI | CCNGG | 2 cut(s) | 163, 912 |
| BstSFI | CTRYAG | 1 cut(s) | 632 |
| BstSLI | GKGCMC | 1 cut(s) | 544 |
| BstUI | CGCG | 1 cut(s) | 696 |
| BstV1I | GCAGC | 2 cut(s) | 646, 686 |
| BstV2I | GAAGAC | 4 cut(s) | 437, 672, 716, 785 |
| BsuRI | GGCC | 2 cut(s) | 358, 935 |
| BtsCI | GGATG | 4 cut(s) | 49, 148, 230, 841 |
| BtsI | GCAGTG | 1 cut(s) | 629 |
| BtsIMutI | CAGTG | 3 cut(s) | 124, 629, 976 |
| Cac8I | GCNNGC | 1 cut(s) | 829 |
| CciI | TCATGA | 1 cut(s) | 588 |
| CfoI | GCGC | 2 cut(s) | 423, 696 |
| Cfr13I | GGNCC | 1 cut(s) | 167 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 456, 491 |
| CviAII | CATG | 6 cut(s) | 328, 418, 518, 589, 707, 931 |
| DdeI | CTNAG | 4 cut(s) | 670, 732, 753, 818 |
| DpnI | GATC | 3 cut(s) | 298, 416, 960 |
| DpnII | GATC | 3 cut(s) | 296, 414, 958 |
| DraIII | CACNNNGTG | 1 cut(s) | 821 |
| EaeI | YGGCCR | 2 cut(s) | 356, 933 |
| Eam1104I | CTCTTC | 1 cut(s) | 566 |
| EarI | CTCTTC | 1 cut(s) | 566 |
| EciI | GGCGGA | 1 cut(s) | 611 |
| Eco130I | CCWWGG | 1 cut(s) | 682 |
| Eco47I | GGWCC | 1 cut(s) | 167 |
| EcoRII | CCWGG | 2 cut(s) | 163, 912 |
| EcoT14I | CCWWGG | 1 cut(s) | 682 |
| EcoT22I | ATGCAT | 1 cut(s) | 150 |
| ErhI | CCWWGG | 1 cut(s) | 682 |
| Esp3I | CGTCTC | 1 cut(s) | 277 |
| FaeI | CATG | 6 cut(s) | 331, 421, 521, 592, 710, 934 |
| FatI | CATG | 6 cut(s) | 327, 417, 517, 588, 706, 930 |
| FauNDI | CATATG | 1 cut(s) | 144 |
| FbaI | TGATCA | 1 cut(s) | 958 |
| Fnu4HI | GCNGC | 2 cut(s) | 635, 675 |
| FokI | GGATG | 4 cut(s) | 56, 135, 237, 848 |
| Fsp4HI | GCNGC | 2 cut(s) | 635, 675 |
| FspBI | CTAG | 3 cut(s) | 24, 323, 988 |
| GlaI | GCGC | 2 cut(s) | 422, 695 |
| GluI | GCNGC | 2 cut(s) | 635, 675 |
| HaeIII | GGCC | 2 cut(s) | 358, 935 |
| HhaI | GCGC | 2 cut(s) | 423, 696 |
| Hin1II | CATG | 6 cut(s) | 331, 421, 521, 592, 710, 934 |
| Hin6I | GCGC | 2 cut(s) | 421, 694 |
| HinP1I | GCGC | 2 cut(s) | 421, 694 |
| HincII | GTYRAC | 1 cut(s) | 700 |
| HindII | GTYRAC | 1 cut(s) | 700 |
| HinfI | GANTC | 4 cut(s) | 348, 575, 687, 953 |
| HphI | GGTGA | 2 cut(s) | 748, 962 |
| Hpy166II | GTNNAC | 1 cut(s) | 700 |
| Hpy188I | TCNGA | 2 cut(s) | 241, 958 |
| Hpy188III | TCNNGA | 2 cut(s) | 262, 589 |
| Hpy8I | GTNNAC | 1 cut(s) | 700 |
| HpyAV | CCTTC | 3 cut(s) | 42, 151, 259 |
| HpyCH4III | ACNGT | 1 cut(s) | 119 |
| HpyCH4IV | ACGT | 3 cut(s) | 200, 481, 872 |
| HpyCH4V | TGCA | 6 cut(s) | 148, 450, 508, 634, 859, 922 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 484, 539 |
| HpyF3I | CTNAG | 4 cut(s) | 670, 732, 753, 818 |
| HpySE526I | ACGT | 3 cut(s) | 200, 481, 872 |
| Hsp92II | CATG | 6 cut(s) | 331, 421, 521, 592, 710, 934 |
| HspAI | GCGC | 2 cut(s) | 421, 694 |
| Ksp22I | TGATCA | 1 cut(s) | 958 |
| Kzo9I | GATC | 3 cut(s) | 296, 414, 958 |
| LmnI | GCTCC | 1 cut(s) | 463 |
| Lsp1109I | GCAGC | 2 cut(s) | 646, 686 |
| LweI | GCATC | 2 cut(s) | 157, 913 |
| MaeI | CTAG | 3 cut(s) | 24, 323, 988 |
| MaeII | ACGT | 3 cut(s) | 200, 481, 872 |
| MaeIII | GTNAC | 2 cut(s) | 73, 950 |
| MalI | GATC | 3 cut(s) | 298, 416, 960 |
| MboI | GATC | 3 cut(s) | 296, 414, 958 |
| MboII | GAAGA | 9 cut(s) | 442, 553, 577, 634, 677, 716, 790, 808, 978 |
| MfeI | CAATTG | 1 cut(s) | 95 |
| MhlI | GDGCHC | 1 cut(s) | 544 |
| MlsI | TGGCCA | 2 cut(s) | 358, 935 |
| MluCI | AATT | 8 cut(s) | 37, 95, 123, 186, 764, 893, 938, 972 |
| MluNI | TGGCCA | 2 cut(s) | 358, 935 |
| MlyI | GAGTC | 4 cut(s) | 357, 569, 696, 947 |
| Mox20I | TGGCCA | 2 cut(s) | 358, 935 |
| Mph1103I | ATGCAT | 1 cut(s) | 150 |
| MscI | TGGCCA | 2 cut(s) | 358, 935 |
| MseI | TTAA | 3 cut(s) | 138, 279, 846 |
| MslI | CAYNNNNRTG | 1 cut(s) | 587 |
| Msp20I | TGGCCA | 2 cut(s) | 358, 935 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| MspR9I | CCNGG | 2 cut(s) | 165, 914 |
| MunI | CAATTG | 1 cut(s) | 95 |
| MvaI | CCWGG | 2 cut(s) | 165, 914 |
| MvnI | CGCG | 1 cut(s) | 696 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 484, 539 |
| NdeI | CATATG | 1 cut(s) | 144 |
| NdeII | GATC | 3 cut(s) | 296, 414, 958 |
| NlaIII | CATG | 6 cut(s) | 331, 421, 521, 592, 710, 934 |
| NlaIV | GGNNCC | 3 cut(s) | 162, 465, 541 |
| NmuCI | GTSAC | 1 cut(s) | 950 |
| NsiI | ATGCAT | 1 cut(s) | 150 |
| PagI | TCATGA | 1 cut(s) | 588 |
| PflFI | GACNNNGTC | 1 cut(s) | 347 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 942 |
| PkrI | GCNGC | 2 cut(s) | 636, 676 |
| PleI | GAGTC | 4 cut(s) | 356, 569, 695, 947 |
| PpsI | GAGTC | 4 cut(s) | 356, 569, 695, 947 |
| Ppu21I | YACGTR | 2 cut(s) | 482, 873 |
| Psp1406I | AACGTT | 1 cut(s) | 200 |
| Psp6I | CCWGG | 2 cut(s) | 163, 912 |
| PspGI | CCWGG | 2 cut(s) | 163, 912 |
| PspN4I | GGNNCC | 3 cut(s) | 162, 465, 541 |
| PspPI | GGNCC | 1 cut(s) | 167 |
| PstI | CTGCAG | 1 cut(s) | 636 |
| PsyI | GACNNNGTC | 1 cut(s) | 347 |
| RseI | CAYNNNNRTG | 1 cut(s) | 587 |
| SaqAI | TTAA | 3 cut(s) | 138, 279, 846 |
| SatI | GCNGC | 2 cut(s) | 635, 675 |
| Sau3AI | GATC | 3 cut(s) | 296, 414, 958 |
| Sau96I | GGNCC | 1 cut(s) | 167 |
| SchI | GAGTC | 4 cut(s) | 357, 569, 696, 947 |
| ScrFI | CCNGG | 2 cut(s) | 165, 914 |
| SduI | GDGCHC | 1 cut(s) | 544 |
| SfaNI | GCATC | 2 cut(s) | 157, 913 |
| SfcI | CTRYAG | 1 cut(s) | 632 |
| SinI | GGWCC | 1 cut(s) | 167 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 587 |
| SmlI | CTYRAG | 1 cut(s) | 278 |
| SmoI | CTYRAG | 1 cut(s) | 278 |
| SpeI | ACTAGT | 1 cut(s) | 23 |
| Sse9I | AATT | 8 cut(s) | 37, 95, 123, 186, 764, 893, 938, 972 |
| SsiI | CCGC | 2 cut(s) | 596, 925 |
| SspI | AATATT | 1 cut(s) | 716 |
| SspMI | CTAG | 3 cut(s) | 24, 323, 988 |
| StyD4I | CCNGG | 2 cut(s) | 163, 912 |
| StyI | CCWWGG | 1 cut(s) | 682 |
| TaaI | ACNGT | 1 cut(s) | 119 |
| TaiI | ACGT | 3 cut(s) | 203, 484, 875 |
| TaqI | TCGA | 2 cut(s) | 261, 351 |
| TasI | AATT | 8 cut(s) | 37, 95, 123, 186, 764, 893, 938, 972 |
| Tru1I | TTAA | 3 cut(s) | 138, 279, 846 |
| Tru9I | TTAA | 3 cut(s) | 138, 279, 846 |
| TscAI | CASTG | 3 cut(s) | 124, 636, 983 |
| TseFI | GTSAC | 1 cut(s) | 950 |
| TseI | GCWGC | 2 cut(s) | 634, 674 |
| Tsp45I | GTSAC | 1 cut(s) | 950 |
| TspDTI | ATGAA | 6 cut(s) | 101, 170, 571, 577, 657, 809 |
| TspGWI | ACGGA | 2 cut(s) | 301, 853 |
| TspRI | CASTG | 3 cut(s) | 124, 636, 983 |
| Tth111I | GACNNNGTC | 1 cut(s) | 347 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 942 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 1 cut(s) | 167 |
| XapI | RAATTY | 4 cut(s) | 37, 123, 938, 972 |
| XspI | CTAG | 3 cut(s) | 24, 323, 988 |
| Zsp2I | ATGCAT | 1 cut(s) | 150 |