Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 101 | 5e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 21 |
| AfaI | GTAC | 2 cut(s) | 102, 379 |
| AflIII | ACRYGT | 1 cut(s) | 253 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 138 |
| AjnI | CCWGG | 1 cut(s) | 93 |
| AluBI | AGCT | 4 cut(s) | 269, 293, 302, 360 |
| AluI | AGCT | 4 cut(s) | 269, 293, 302, 360 |
| Alw26I | GTCTC | 3 cut(s) | 125, 173, 244 |
| AoxI | GGCC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 1 cut(s) | 21 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 242, 275 |
| BbvI | GCAGC | 1 cut(s) | 70 |
| BciT130I | CCWGG | 1 cut(s) | 95 |
| BcoDI | GTCTC | 3 cut(s) | 125, 173, 244 |
| BfaI | CTAG | 2 cut(s) | 290, 299 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 1 cut(s) | 95 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 138 |
| BmrFI | CCNGG | 1 cut(s) | 95 |
| BpmI | CTGGAG | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 1 cut(s) | 268 |
| BsaJI | CCNNGG | 3 cut(s) | 69, 93, 189 |
| BseBI | CCWGG | 1 cut(s) | 95 |
| BseDI | CCNNGG | 3 cut(s) | 69, 93, 189 |
| BseGI | GGATG | 2 cut(s) | 185, 234 |
| BseMII | CTCAG | 1 cut(s) | 159 |
| BseRI | GAGGAG | 1 cut(s) | 191 |
| BseXI | GCAGC | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 68 |
| BslFI | GGGAC | 1 cut(s) | 326 |
| BsmAI | GTCTC | 3 cut(s) | 125, 173, 244 |
| BsmFI | GGGAC | 1 cut(s) | 326 |
| BsnI | GGCC | 1 cut(s) | 68 |
| Bsp19I | CCATGG | 1 cut(s) | 69 |
| BspANI | GGCC | 1 cut(s) | 68 |
| BspCNI | CTCAG | 1 cut(s) | 160 |
| BssECI | CCNNGG | 3 cut(s) | 69, 93, 189 |
| BssT1I | CCWWGG | 2 cut(s) | 69, 189 |
| Bst2UI | CCWGG | 1 cut(s) | 95 |
| Bst4CI | ACNGT | 1 cut(s) | 105 |
| BstDEI | CTNAG | 1 cut(s) | 168 |
| BstDSI | CCRYGG | 1 cut(s) | 69 |
| BstF5I | GGATG | 2 cut(s) | 185, 234 |
| BstMAI | GTCTC | 3 cut(s) | 125, 173, 244 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 80, 299 |
| BstNI | CCWGG | 1 cut(s) | 95 |
| BstNSI | RCATGY | 1 cut(s) | 257 |
| BstSCI | CCNGG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 1 cut(s) | 70 |
| BsuRI | GGCC | 1 cut(s) | 68 |
| BtgI | CCRYGG | 1 cut(s) | 69 |
| BtsCI | GGATG | 2 cut(s) | 185, 234 |
| Csp6I | GTAC | 2 cut(s) | 101, 378 |
| CviAII | CATG | 3 cut(s) | 70, 254, 327 |
| CviJI | RGCY | 9 cut(s) | 68, 74, 83, 269, 293, 302, 337, 360, 368 |
| CviKI_1 | RGCY | 9 cut(s) | 68, 74, 83, 269, 293, 302, 337, 360, 368 |
| CviQI | GTAC | 2 cut(s) | 101, 378 |
| DdeI | CTNAG | 1 cut(s) | 168 |
| DraI | TTTAAA | 1 cut(s) | 30 |
| DriI | GACNNNNNGTC | 1 cut(s) | 138 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 2 cut(s) | 69, 189 |
| EcoRII | CCWGG | 1 cut(s) | 93 |
| EcoT14I | CCWWGG | 2 cut(s) | 69, 189 |
| ErhI | CCWWGG | 2 cut(s) | 69, 189 |
| FaeI | CATG | 3 cut(s) | 73, 257, 330 |
| FaiI | YATR | 7 cut(s) | 71, 125, 156, 255, 275, 285, 328 |
| FaqI | GGGAC | 1 cut(s) | 326 |
| FatI | CATG | 3 cut(s) | 69, 253, 326 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 2 cut(s) | 172, 241 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 2 cut(s) | 290, 299 |
| GluI | GCNGC | 1 cut(s) | 84 |
| GsuI | CTGGAG | 1 cut(s) | 36 |
| HaeIII | GGCC | 1 cut(s) | 68 |
| Hin1II | CATG | 3 cut(s) | 73, 257, 330 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HindIII | AAGCTT | 1 cut(s) | 358 |
| HinfI | GANTC | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 2 cut(s) | 144, 169 |
| Hpy188III | TCNNGA | 2 cut(s) | 53, 263 |
| Hpy8I | GTNNAC | 1 cut(s) | 37 |
| HpyCH4III | ACNGT | 1 cut(s) | 105 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 80, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 168 |
| Hsp92II | CATG | 3 cut(s) | 73, 257, 330 |
| LpnPI | CCDG | 4 cut(s) | 66, 80, 107, 360 |
| Lsp1109I | GCAGC | 1 cut(s) | 70 |
| MaeI | CTAG | 2 cut(s) | 290, 299 |
| MboII | GAAGA | 2 cut(s) | 234, 303 |
| MluCI | AATT | 1 cut(s) | 21 |
| MlyI | GAGTC | 1 cut(s) | 173 |
| MnlI | CCTC | 6 cut(s) | 58, 58, 163, 169, 199, 354 |
| MseI | TTAA | 3 cut(s) | 29, 318, 385 |
| MspR9I | CCNGG | 1 cut(s) | 95 |
| MvaI | CCWGG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 80, 299 |
| NcoI | CCATGG | 1 cut(s) | 69 |
| NlaIII | CATG | 3 cut(s) | 73, 257, 330 |
| NspI | RCATGY | 1 cut(s) | 257 |
| PciI | ACATGT | 1 cut(s) | 253 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| PscI | ACATGT | 1 cut(s) | 253 |
| Psp6I | CCWGG | 1 cut(s) | 93 |
| PspGI | CCWGG | 1 cut(s) | 93 |
| RsaI | GTAC | 2 cut(s) | 102, 379 |
| RsaNI | GTAC | 2 cut(s) | 101, 378 |
| SaqAI | TTAA | 3 cut(s) | 29, 318, 385 |
| SatI | GCNGC | 1 cut(s) | 84 |
| SchI | GAGTC | 1 cut(s) | 173 |
| ScrFI | CCNGG | 1 cut(s) | 95 |
| SetI | ASST | 5 cut(s) | 36, 271, 295, 304, 362 |
| SmlI | CTYRAG | 1 cut(s) | 247 |
| SmoI | CTYRAG | 1 cut(s) | 247 |
| Sse9I | AATT | 1 cut(s) | 21 |
| SspI | AATATT | 1 cut(s) | 322 |
| SspMI | CTAG | 2 cut(s) | 290, 299 |
| StyD4I | CCNGG | 1 cut(s) | 93 |
| StyI | CCWWGG | 2 cut(s) | 69, 189 |
| TaaI | ACNGT | 1 cut(s) | 105 |
| TasI | AATT | 1 cut(s) | 21 |
| TatI | WGTACW | 2 cut(s) | 100, 377 |
| Tru1I | TTAA | 3 cut(s) | 29, 318, 385 |
| Tru9I | TTAA | 3 cut(s) | 29, 318, 385 |
| TseI | GCWGC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 2 cut(s) | 174, 315 |
| XapI | RAATTY | 1 cut(s) | 21 |
| XceI | RCATGY | 1 cut(s) | 257 |
| XspI | CTAG | 2 cut(s) | 290, 299 |