ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 87 - 157 | 4e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 128, 397 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 242 |
| AccII | CGCG | 3 cut(s) | 378, 469, 481 |
| AciI | CCGC | 2 cut(s) | 211, 481 |
| AcoI | YGGCCR | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 247 |
| AdeI | CACNNNGTG | 1 cut(s) | 242 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 242, 407, 436 |
| AleI | CACNNNNGTG | 1 cut(s) | 134 |
| AluBI | AGCT | 2 cut(s) | 344, 350 |
| AluI | AGCT | 2 cut(s) | 344, 350 |
| AoxI | GGCC | 2 cut(s) | 212, 353 |
| ApeKI | GCWGC | 2 cut(s) | 341, 380 |
| AspLEI | GCGC | 1 cut(s) | 380 |
| AspS9I | GGNCC | 1 cut(s) | 283 |
| AsuHPI | GGTGA | 1 cut(s) | 155 |
| AvaII | GGWCC | 1 cut(s) | 283 |
| BaeGI | GKGCMC | 1 cut(s) | 131 |
| BanI | GGYRCC | 2 cut(s) | 128, 397 |
| BbvI | GCAGC | 2 cut(s) | 353, 367 |
| BccI | CCATC | 2 cut(s) | 260, 379 |
| BfaI | CTAG | 2 cut(s) | 240, 347 |
| BisI | GCNGC | 4 cut(s) | 212, 342, 381, 482 |
| BlsI | GCNGC | 4 cut(s) | 213, 343, 382, 483 |
| Bme18I | GGWCC | 1 cut(s) | 283 |
| BmgT120I | GGNCC | 1 cut(s) | 283 |
| BmiI | GGNNCC | 4 cut(s) | 45, 130, 173, 399 |
| BpuEI | CTTGAG | 2 cut(s) | 85, 236 |
| BsaHI | GRCGYC | 1 cut(s) | 247 |
| BsaJI | CCNNGG | 2 cut(s) | 286, 430 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 242, 407, 436 |
| Bse1I | ACTGG | 2 cut(s) | 25, 175 |
| Bse3DI | GCAATG | 1 cut(s) | 417 |
| BseDI | CCNNGG | 2 cut(s) | 286, 430 |
| BseGI | GGATG | 1 cut(s) | 325 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 242, 407, 436 |
| BseMI | GCAATG | 1 cut(s) | 417 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseNI | ACTGG | 2 cut(s) | 25, 175 |
| BseSI | GKGCMC | 1 cut(s) | 131 |
| BseXI | GCAGC | 2 cut(s) | 353, 367 |
| Bsh1236I | CGCG | 3 cut(s) | 378, 469, 481 |
| BshFI | GGCC | 2 cut(s) | 214, 355 |
| BshNI | GGYRCC | 2 cut(s) | 128, 397 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 242, 407, 436 |
| BsnI | GGCC | 2 cut(s) | 214, 355 |
| Bsp1286I | GDGCHC | 1 cut(s) | 131 |
| Bsp143I | GATC | 1 cut(s) | 255 |
| BspACI | CCGC | 2 cut(s) | 211, 481 |
| BspANI | GGCC | 2 cut(s) | 214, 355 |
| BspCNI | CTCAG | 1 cut(s) | 109 |
| BspFNI | CGCG | 3 cut(s) | 378, 469, 481 |
| BspLI | GGNNCC | 4 cut(s) | 45, 130, 173, 399 |
| BspT107I | GGYRCC | 2 cut(s) | 128, 397 |
| BsrDI | GCAATG | 1 cut(s) | 417 |
| BsrI | ACTGG | 2 cut(s) | 25, 175 |
| BssECI | CCNNGG | 2 cut(s) | 286, 430 |
| BssMI | GATC | 1 cut(s) | 255 |
| BssNI | GRCGYC | 1 cut(s) | 247 |
| BssT1I | CCWWGG | 1 cut(s) | 430 |
| BstACI | GRCGYC | 1 cut(s) | 247 |
| BstC8I | GCNNGC | 2 cut(s) | 467, 471 |
| BstDEI | CTNAG | 1 cut(s) | 117 |
| BstF5I | GGATG | 1 cut(s) | 325 |
| BstFNI | CGCG | 3 cut(s) | 378, 469, 481 |
| BstHHI | GCGC | 1 cut(s) | 380 |
| BstKTI | GATC | 1 cut(s) | 258 |
| BstMBI | GATC | 1 cut(s) | 255 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 347, 404, 487 |
| BstNSI | RCATGY | 1 cut(s) | 93 |
| BstSLI | GKGCMC | 1 cut(s) | 131 |
| BstUI | CGCG | 3 cut(s) | 378, 469, 481 |
| BstV1I | GCAGC | 2 cut(s) | 353, 367 |
| BsuRI | GGCC | 2 cut(s) | 214, 355 |
| BtgZI | GCGATG | 2 cut(s) | 398, 462 |
| BtsCI | GGATG | 1 cut(s) | 325 |
| Cac8I | GCNNGC | 2 cut(s) | 467, 471 |
| CfoI | GCGC | 1 cut(s) | 380 |
| Cfr13I | GGNCC | 1 cut(s) | 283 |
| CseI | GACGC | 1 cut(s) | 255 |
| CviAII | CATG | 4 cut(s) | 40, 62, 90, 365 |
| CviJI | RGCY | 9 cut(s) | 44, 83, 214, 272, 344, 350, 355, 412, 440 |
| CviKI_1 | RGCY | 9 cut(s) | 44, 83, 214, 272, 344, 350, 355, 412, 440 |
| DdeI | CTNAG | 1 cut(s) | 117 |
| DpnI | GATC | 1 cut(s) | 257 |
| DpnII | GATC | 1 cut(s) | 255 |
| DraIII | CACNNNGTG | 1 cut(s) | 242 |
| EaeI | YGGCCR | 1 cut(s) | 212 |
| Eco130I | CCWWGG | 1 cut(s) | 430 |
| Eco47I | GGWCC | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 430 |
| EcoT22I | ATGCAT | 2 cut(s) | 67, 91 |
| ErhI | CCWWGG | 1 cut(s) | 430 |
| FaeI | CATG | 4 cut(s) | 43, 65, 93, 368 |
| FaiI | YATR | 9 cut(s) | 41, 63, 87, 91, 161, 338, 366, 425, 452 |
| FatI | CATG | 4 cut(s) | 39, 61, 89, 364 |
| Fnu4HI | GCNGC | 4 cut(s) | 212, 342, 381, 482 |
| FokI | GGATG | 1 cut(s) | 332 |
| Fsp4HI | GCNGC | 4 cut(s) | 212, 342, 381, 482 |
| FspBI | CTAG | 2 cut(s) | 240, 347 |
| GlaI | GCGC | 1 cut(s) | 379 |
| GluI | GCNGC | 4 cut(s) | 212, 342, 381, 482 |
| HaeIII | GGCC | 2 cut(s) | 214, 355 |
| HgaI | GACGC | 1 cut(s) | 255 |
| HhaI | GCGC | 1 cut(s) | 380 |
| Hin1I | GRCGYC | 1 cut(s) | 247 |
| Hin1II | CATG | 4 cut(s) | 43, 65, 93, 368 |
| Hin6I | GCGC | 1 cut(s) | 378 |
| HinP1I | GCGC | 1 cut(s) | 378 |
| HincII | GTYRAC | 1 cut(s) | 57 |
| HindII | GTYRAC | 1 cut(s) | 57 |
| HinfI | GANTC | 3 cut(s) | 12, 96, 219 |
| HphI | GGTGA | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 3 cut(s) | 57, 245, 283 |
| Hpy188I | TCNGA | 2 cut(s) | 228, 513 |
| Hpy188III | TCNNGA | 3 cut(s) | 102, 183, 253 |
| Hpy8I | GTNNAC | 3 cut(s) | 57, 245, 283 |
| HpyAV | CCTTC | 2 cut(s) | 118, 134 |
| HpyCH4V | TGCA | 3 cut(s) | 65, 89, 490 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 347, 404, 487 |
| HpyF3I | CTNAG | 1 cut(s) | 117 |
| Hsp92I | GRCGYC | 1 cut(s) | 247 |
| Hsp92II | CATG | 4 cut(s) | 43, 65, 93, 368 |
| HspAI | GCGC | 1 cut(s) | 378 |
| Kzo9I | GATC | 1 cut(s) | 255 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LpnPI | CCDG | 8 cut(s) | 6, 19, 90, 184, 188, 263, 310, 393 |
| Lsp1109I | GCAGC | 2 cut(s) | 353, 367 |
| MaeI | CTAG | 2 cut(s) | 240, 347 |
| MalI | GATC | 1 cut(s) | 257 |
| MboI | GATC | 1 cut(s) | 255 |
| MboII | GAAGA | 1 cut(s) | 133 |
| MfeI | CAATTG | 1 cut(s) | 485 |
| MhlI | GDGCHC | 1 cut(s) | 131 |
| MluCI | AATT | 4 cut(s) | 152, 300, 485, 515 |
| MlyI | GAGTC | 1 cut(s) | 228 |
| MnlI | CCTC | 7 cut(s) | 22, 73, 260, 281, 382, 382, 388 |
| Mph1103I | ATGCAT | 2 cut(s) | 67, 91 |
| MseI | TTAA | 1 cut(s) | 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 134 |
| MunI | CAATTG | 1 cut(s) | 485 |
| MvnI | CGCG | 3 cut(s) | 378, 469, 481 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 347, 404, 487 |
| NdeII | GATC | 1 cut(s) | 255 |
| NlaIII | CATG | 4 cut(s) | 43, 65, 93, 368 |
| NlaIV | GGNNCC | 4 cut(s) | 45, 130, 173, 399 |
| NmeAIII | GCCGAG | 1 cut(s) | 331 |
| NsiI | ATGCAT | 2 cut(s) | 67, 91 |
| NspI | RCATGY | 1 cut(s) | 93 |
| OliI | CACNNNNGTG | 1 cut(s) | 134 |
| PfeI | GAWTC | 2 cut(s) | 12, 96 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 242 |
| PkrI | GCNGC | 4 cut(s) | 213, 343, 382, 483 |
| PleI | GAGTC | 1 cut(s) | 227 |
| PpsI | GAGTC | 1 cut(s) | 227 |
| PspN4I | GGNNCC | 4 cut(s) | 45, 130, 173, 399 |
| PspPI | GGNCC | 1 cut(s) | 283 |
| RseI | CAYNNNNRTG | 1 cut(s) | 134 |
| SaqAI | TTAA | 1 cut(s) | 167 |
| SatI | GCNGC | 4 cut(s) | 212, 342, 381, 482 |
| Sau3AI | GATC | 1 cut(s) | 255 |
| Sau96I | GGNCC | 1 cut(s) | 283 |
| SchI | GAGTC | 1 cut(s) | 228 |
| SduI | GDGCHC | 1 cut(s) | 131 |
| SetI | ASST | 8 cut(s) | 145, 241, 282, 298, 346, 352, 393, 436 |
| SinI | GGWCC | 1 cut(s) | 283 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 134 |
| SmlI | CTYRAG | 2 cut(s) | 100, 251 |
| SmoI | CTYRAG | 2 cut(s) | 100, 251 |
| Sse9I | AATT | 4 cut(s) | 152, 300, 485, 515 |
| SsiI | CCGC | 2 cut(s) | 211, 481 |
| SspI | AATATT | 1 cut(s) | 262 |
| SspMI | CTAG | 2 cut(s) | 240, 347 |
| StyI | CCWWGG | 1 cut(s) | 430 |
| TaqI | TCGA | 1 cut(s) | 393 |
| TaqII | GACCGA | 1 cut(s) | 300 |
| TasI | AATT | 4 cut(s) | 152, 300, 485, 515 |
| TauI | GCSGC | 2 cut(s) | 214, 484 |
| TfiI | GAWTC | 2 cut(s) | 12, 96 |
| Tru1I | TTAA | 1 cut(s) | 167 |
| Tru9I | TTAA | 1 cut(s) | 167 |
| TseI | GCWGC | 2 cut(s) | 341, 380 |
| TspDTI | ATGAA | 2 cut(s) | 165, 465 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 283 |
| XceI | RCATGY | 1 cut(s) | 93 |
| XspI | CTAG | 2 cut(s) | 240, 347 |
| Zsp2I | ATGCAT | 2 cut(s) | 67, 91 |