Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 315 |
| AclWI | GGATC | 3 cut(s) | 509, 511, 522 |
| AcsI | RAATTY | 2 cut(s) | 278, 375 |
| AfaI | GTAC | 1 cut(s) | 558 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 315 |
| AflIII | ACRYGT | 1 cut(s) | 691 |
| AgsI | TTSAA | 4 cut(s) | 278, 424, 631, 775 |
| AjnI | CCWGG | 1 cut(s) | 413 |
| AluBI | AGCT | 2 cut(s) | 455, 716 |
| AluI | AGCT | 2 cut(s) | 455, 716 |
| Alw21I | GWGCWC | 1 cut(s) | 668 |
| Alw26I | GTCTC | 1 cut(s) | 48 |
| AlwI | GGATC | 3 cut(s) | 509, 511, 522 |
| AoxI | GGCC | 4 cut(s) | 147, 495, 537, 549 |
| ApoI | RAATTY | 2 cut(s) | 278, 375 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 357, 434 |
| AspS9I | GGNCC | 1 cut(s) | 537 |
| AsuC2I | CCSGG | 1 cut(s) | 561 |
| AsuHPI | GGTGA | 1 cut(s) | 122 |
| BaeGI | GKGCMC | 1 cut(s) | 198 |
| BamHI | GGATCC | 1 cut(s) | 514 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 42, 74 |
| BbsI | GAAGAC | 1 cut(s) | 687 |
| Bbv12I | GWGCWC | 1 cut(s) | 668 |
| BccI | CCATC | 4 cut(s) | 12, 185, 238, 313 |
| BciT130I | CCWGG | 1 cut(s) | 415 |
| BciVI | GTATCC | 1 cut(s) | 629 |
| BcnI | CCSGG | 1 cut(s) | 561 |
| BcoDI | GTCTC | 1 cut(s) | 48 |
| BfaI | CTAG | 2 cut(s) | 47, 713 |
| BfuI | GTATCC | 1 cut(s) | 629 |
| BlpI | GCTNAGC | 1 cut(s) | 9 |
| Bme1390I | CCNGG | 2 cut(s) | 415, 561 |
| BmgT120I | GGNCC | 1 cut(s) | 537 |
| BmiI | GGNNCC | 1 cut(s) | 516 |
| BmrFI | CCNGG | 2 cut(s) | 415, 561 |
| BmsI | GCATC | 2 cut(s) | 314, 626 |
| BpiI | GAAGAC | 1 cut(s) | 687 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 364, 396 |
| BpmI | CTGGAG | 2 cut(s) | 151, 528 |
| Bpu10I | CCTNAGC | 1 cut(s) | 468 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 9 |
| BpuEI | CTTGAG | 2 cut(s) | 47, 246 |
| BpuMI | CCSGG | 1 cut(s) | 561 |
| BsaJI | CCNNGG | 1 cut(s) | 674 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 315 |
| BseBI | CCWGG | 1 cut(s) | 415 |
| BseDI | CCNNGG | 1 cut(s) | 674 |
| BseGI | GGATG | 4 cut(s) | 196, 305, 324, 736 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BseMII | CTCAG | 1 cut(s) | 397 |
| BseSI | GKGCMC | 1 cut(s) | 198 |
| BshFI | GGCC | 4 cut(s) | 149, 497, 539, 551 |
| BsiHKAI | GWGCWC | 1 cut(s) | 668 |
| BsiSI | CCGG | 1 cut(s) | 560 |
| BslFI | GGGAC | 1 cut(s) | 702 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BsmAI | GTCTC | 1 cut(s) | 48 |
| BsmFI | GGGAC | 1 cut(s) | 702 |
| BsnI | GGCC | 4 cut(s) | 149, 497, 539, 551 |
| Bsp1286I | GDGCHC | 2 cut(s) | 198, 668 |
| Bsp143I | GATC | 2 cut(s) | 503, 514 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 9 |
| BspANI | GGCC | 4 cut(s) | 149, 497, 539, 551 |
| BspCNI | CTCAG | 1 cut(s) | 396 |
| BspHI | TCATGA | 1 cut(s) | 349 |
| BspLI | GGNNCC | 1 cut(s) | 516 |
| BspPI | GGATC | 3 cut(s) | 509, 511, 522 |
| BssECI | CCNNGG | 1 cut(s) | 674 |
| BssMI | GATC | 2 cut(s) | 503, 514 |
| BssT1I | CCWWGG | 1 cut(s) | 674 |
| Bst2UI | CCWGG | 1 cut(s) | 415 |
| Bst4CI | ACNGT | 1 cut(s) | 663 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 336 |
| BstDEI | CTNAG | 6 cut(s) | 9, 39, 95, 383, 468, 612 |
| BstF5I | GGATG | 4 cut(s) | 196, 305, 324, 736 |
| BstKTI | GATC | 2 cut(s) | 506, 517 |
| BstMAI | GTCTC | 1 cut(s) | 48 |
| BstMBI | GATC | 2 cut(s) | 503, 514 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 623 |
| BstNI | CCWGG | 1 cut(s) | 415 |
| BstNSI | RCATGY | 3 cut(s) | 338, 342, 695 |
| BstSCI | CCNGG | 2 cut(s) | 413, 559 |
| BstSLI | GKGCMC | 1 cut(s) | 198 |
| BstV2I | GAAGAC | 1 cut(s) | 687 |
| BstX2I | RGATCY | 2 cut(s) | 503, 514 |
| BstYI | RGATCY | 2 cut(s) | 503, 514 |
| BsuI | GTATCC | 1 cut(s) | 629 |
| BsuRI | GGCC | 4 cut(s) | 149, 497, 539, 551 |
| BtsCI | GGATG | 4 cut(s) | 196, 305, 324, 736 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 336 |
| CciI | TCATGA | 1 cut(s) | 349 |
| Cfr13I | GGNCC | 1 cut(s) | 537 |
| Csp6I | GTAC | 1 cut(s) | 557 |
| CviAII | CATG | 6 cut(s) | 83, 215, 335, 339, 350, 692 |
| CviJI | RGCY | 8 cut(s) | 149, 455, 467, 497, 539, 551, 626, 716 |
| CviKI_1 | RGCY | 8 cut(s) | 149, 455, 467, 497, 539, 551, 626, 716 |
| CviQI | GTAC | 1 cut(s) | 557 |
| DdeI | CTNAG | 6 cut(s) | 9, 39, 95, 383, 468, 612 |
| DpnI | GATC | 2 cut(s) | 505, 516 |
| DpnII | GATC | 2 cut(s) | 503, 514 |
| Eco130I | CCWWGG | 1 cut(s) | 674 |
| EcoO109I | RGGNCCY | 1 cut(s) | 537 |
| EcoRI | GAATTC | 1 cut(s) | 375 |
| EcoRII | CCWGG | 1 cut(s) | 413 |
| EcoT14I | CCWWGG | 1 cut(s) | 674 |
| EcoT22I | ATGCAT | 1 cut(s) | 340 |
| ErhI | CCWWGG | 1 cut(s) | 674 |
| FaeI | CATG | 6 cut(s) | 86, 218, 338, 342, 353, 695 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 422, 454 |
| FaqI | GGGAC | 1 cut(s) | 702 |
| FatI | CATG | 6 cut(s) | 82, 214, 334, 338, 349, 691 |
| FokI | GGATG | 4 cut(s) | 203, 292, 331, 723 |
| FspBI | CTAG | 2 cut(s) | 47, 713 |
| GsuI | CTGGAG | 2 cut(s) | 151, 528 |
| HaeIII | GGCC | 4 cut(s) | 149, 497, 539, 551 |
| HapII | CCGG | 1 cut(s) | 560 |
| Hin1II | CATG | 6 cut(s) | 86, 218, 338, 342, 353, 695 |
| HinfI | GANTC | 2 cut(s) | 226, 299 |
| HpaII | CCGG | 1 cut(s) | 560 |
| HphI | GGTGA | 1 cut(s) | 122 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 659 |
| Hpy188I | TCNGA | 1 cut(s) | 289 |
| Hpy188III | TCNNGA | 4 cut(s) | 130, 350, 501, 507 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 659 |
| HpyAV | CCTTC | 6 cut(s) | 129, 249, 387, 424, 541, 635 |
| HpyCH4III | ACNGT | 1 cut(s) | 663 |
| HpyCH4IV | ACGT | 2 cut(s) | 326, 405 |
| HpyCH4V | TGCA | 3 cut(s) | 305, 334, 338 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 623 |
| HpyF3I | CTNAG | 6 cut(s) | 9, 39, 95, 383, 468, 612 |
| HpySE526I | ACGT | 2 cut(s) | 326, 405 |
| Hsp92II | CATG | 6 cut(s) | 86, 218, 338, 342, 353, 695 |
| Kzo9I | GATC | 2 cut(s) | 503, 514 |
| LpnPI | CCDG | 6 cut(s) | 115, 400, 427, 486, 492, 573 |
| LweI | GCATC | 2 cut(s) | 314, 626 |
| MaeI | CTAG | 2 cut(s) | 47, 713 |
| MaeII | ACGT | 2 cut(s) | 326, 405 |
| MalI | GATC | 2 cut(s) | 505, 516 |
| MboI | GATC | 2 cut(s) | 503, 514 |
| MboII | GAAGA | 3 cut(s) | 50, 402, 692 |
| MflI | RGATCY | 2 cut(s) | 503, 514 |
| MhlI | GDGCHC | 2 cut(s) | 198, 668 |
| MluCI | AATT | 6 cut(s) | 88, 183, 278, 354, 375, 449 |
| MmeI | TCCRAC | 2 cut(s) | 57, 148 |
| Mph1103I | ATGCAT | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 2 cut(s) | 357, 434 |
| MseI | TTAA | 1 cut(s) | 750 |
| MspI | CCGG | 1 cut(s) | 560 |
| MspR9I | CCNGG | 2 cut(s) | 415, 561 |
| MvaI | CCWGG | 1 cut(s) | 415 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 623 |
| NciI | CCSGG | 1 cut(s) | 561 |
| NdeII | GATC | 2 cut(s) | 503, 514 |
| NlaIII | CATG | 6 cut(s) | 86, 218, 338, 342, 353, 695 |
| NlaIV | GGNNCC | 1 cut(s) | 516 |
| NsiI | ATGCAT | 1 cut(s) | 340 |
| NspI | RCATGY | 3 cut(s) | 338, 342, 695 |
| PaeI | GCATGC | 1 cut(s) | 338 |
| PagI | TCATGA | 1 cut(s) | 349 |
| PciI | ACATGT | 1 cut(s) | 691 |
| PdmI | GAANNNNTTC | 2 cut(s) | 357, 434 |
| PfeI | GAWTC | 2 cut(s) | 226, 299 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 315 |
| PscI | ACATGT | 1 cut(s) | 691 |
| Psp6I | CCWGG | 1 cut(s) | 413 |
| PspGI | CCWGG | 1 cut(s) | 413 |
| PspN4I | GGNNCC | 1 cut(s) | 516 |
| PspPI | GGNCC | 1 cut(s) | 537 |
| PsuI | RGATCY | 2 cut(s) | 503, 514 |
| RsaI | GTAC | 1 cut(s) | 558 |
| RsaNI | GTAC | 1 cut(s) | 557 |
| SaqAI | TTAA | 1 cut(s) | 750 |
| Sau3AI | GATC | 2 cut(s) | 503, 514 |
| Sau96I | GGNCC | 1 cut(s) | 537 |
| ScrFI | CCNGG | 2 cut(s) | 415, 561 |
| SduI | GDGCHC | 2 cut(s) | 198, 668 |
| SfaNI | GCATC | 2 cut(s) | 314, 626 |
| SmlI | CTYRAG | 2 cut(s) | 62, 261 |
| SmoI | CTYRAG | 2 cut(s) | 62, 261 |
| SphI | GCATGC | 1 cut(s) | 338 |
| Sse9I | AATT | 6 cut(s) | 88, 183, 278, 354, 375, 449 |
| SspMI | CTAG | 2 cut(s) | 47, 713 |
| StyD4I | CCNGG | 2 cut(s) | 413, 559 |
| StyI | CCWWGG | 1 cut(s) | 674 |
| TaaI | ACNGT | 1 cut(s) | 663 |
| TaiI | ACGT | 2 cut(s) | 329, 408 |
| TasI | AATT | 6 cut(s) | 88, 183, 278, 354, 375, 449 |
| TfiI | GAWTC | 2 cut(s) | 226, 299 |
| Tru1I | TTAA | 1 cut(s) | 750 |
| Tru9I | TTAA | 1 cut(s) | 750 |
| TspDTI | ATGAA | 2 cut(s) | 366, 516 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 315 |
| XapI | RAATTY | 2 cut(s) | 278, 375 |
| XceI | RCATGY | 3 cut(s) | 338, 342, 695 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 316 |
| XmnI | GAANNNNTTC | 2 cut(s) | 357, 434 |
| XspI | CTAG | 2 cut(s) | 47, 713 |
| Zsp2I | ATGCAT | 1 cut(s) | 340 |