Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 647 |
| AccB1I | GGYRCC | 2 cut(s) | 647, 790 |
| AccII | CGCG | 1 cut(s) | 452 |
| AciI | CCGC | 4 cut(s) | 340, 376, 452, 470 |
| AclWI | GGATC | 4 cut(s) | 186, 338, 351, 401 |
| AcsI | RAATTY | 3 cut(s) | 293, 383, 519 |
| AcuI | CTGAAG | 1 cut(s) | 659 |
| AcyI | GRCGYC | 1 cut(s) | 813 |
| AfaI | GTAC | 3 cut(s) | 114, 160, 649 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 371, 416 |
| AgsI | TTSAA | 3 cut(s) | 639, 659, 704 |
| AleI | CACNNNNGTG | 1 cut(s) | 229 |
| AluBI | AGCT | 2 cut(s) | 530, 693 |
| AluI | AGCT | 2 cut(s) | 530, 693 |
| Alw21I | GWGCWC | 1 cut(s) | 37 |
| Alw26I | GTCTC | 1 cut(s) | 441 |
| AlwI | GGATC | 4 cut(s) | 186, 338, 351, 401 |
| AoxI | GGCC | 1 cut(s) | 373 |
| ApeKI | GCWGC | 2 cut(s) | 359, 527 |
| ApoI | RAATTY | 3 cut(s) | 293, 383, 519 |
| Asp718I | GGTACC | 1 cut(s) | 647 |
| AspA2I | CCTAGG | 1 cut(s) | 713 |
| AspLEI | GCGC | 1 cut(s) | 172 |
| AsuHPI | GGTGA | 1 cut(s) | 29 |
| AsuII | TTCGAA | 1 cut(s) | 582 |
| AvrII | CCTAGG | 1 cut(s) | 713 |
| BaeGI | GKGCMC | 1 cut(s) | 795 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 631, 639, 664, 672 |
| BamHI | GGATCC | 1 cut(s) | 343 |
| BanI | GGYRCC | 2 cut(s) | 647, 790 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 657, 689 |
| BauI | CACGAG | 1 cut(s) | 531 |
| Bbv12I | GWGCWC | 1 cut(s) | 37 |
| BbvI | GCAGC | 2 cut(s) | 371, 539 |
| BccI | CCATC | 3 cut(s) | 389, 449, 584 |
| BceAI | ACGGC | 1 cut(s) | 318 |
| BcoDI | GTCTC | 1 cut(s) | 441 |
| BfaI | CTAG | 2 cut(s) | 690, 714 |
| BisI | GCNGC | 4 cut(s) | 360, 376, 471, 528 |
| BlnI | CCTAGG | 1 cut(s) | 713 |
| BlsI | GCNGC | 4 cut(s) | 361, 377, 472, 529 |
| BmiI | GGNNCC | 3 cut(s) | 345, 649, 792 |
| BmsI | GCATC | 2 cut(s) | 578, 679 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| Bpu14I | TTCGAA | 1 cut(s) | 582 |
| BsaHI | GRCGYC | 1 cut(s) | 813 |
| BsaJI | CCNNGG | 1 cut(s) | 713 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 450, 480, 556, 586 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 371, 416 |
| Bse1I | ACTGG | 2 cut(s) | 140, 347 |
| BseDI | CCNNGG | 1 cut(s) | 713 |
| BseGI | GGATG | 1 cut(s) | 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 371, 416 |
| BseMII | CTCAG | 1 cut(s) | 131 |
| BseNI | ACTGG | 2 cut(s) | 140, 347 |
| BseSI | GKGCMC | 1 cut(s) | 795 |
| BseXI | GCAGC | 2 cut(s) | 371, 539 |
| Bsh1236I | CGCG | 1 cut(s) | 452 |
| BshFI | GGCC | 1 cut(s) | 375 |
| BshNI | GGYRCC | 2 cut(s) | 647, 790 |
| BsiHKAI | GWGCWC | 1 cut(s) | 37 |
| BslFI | GGGAC | 3 cut(s) | 577, 602, 840 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 371, 416 |
| BsmAI | GTCTC | 1 cut(s) | 441 |
| BsmBI | CGTCTC | 1 cut(s) | 441 |
| BsmFI | GGGAC | 3 cut(s) | 577, 602, 840 |
| BsnI | GGCC | 1 cut(s) | 375 |
| Bsp119I | TTCGAA | 1 cut(s) | 582 |
| Bsp1286I | GDGCHC | 2 cut(s) | 37, 795 |
| Bsp143I | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| BspACI | CCGC | 4 cut(s) | 340, 376, 452, 470 |
| BspANI | GGCC | 1 cut(s) | 375 |
| BspCNI | CTCAG | 1 cut(s) | 132 |
| BspFNI | CGCG | 1 cut(s) | 452 |
| BspLI | GGNNCC | 3 cut(s) | 345, 649, 792 |
| BspPI | GGATC | 4 cut(s) | 186, 338, 351, 401 |
| BspT104I | TTCGAA | 1 cut(s) | 582 |
| BspT107I | GGYRCC | 2 cut(s) | 647, 790 |
| BsrI | ACTGG | 2 cut(s) | 140, 347 |
| BssECI | CCNNGG | 1 cut(s) | 713 |
| BssMI | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| BssNI | GRCGYC | 1 cut(s) | 813 |
| BssSI | CACGAG | 1 cut(s) | 531 |
| BssT1I | CCWWGG | 1 cut(s) | 713 |
| Bst2BI | CACGAG | 1 cut(s) | 531 |
| Bst4CI | ACNGT | 4 cut(s) | 228, 282, 369, 684 |
| BstACI | GRCGYC | 1 cut(s) | 813 |
| BstBI | TTCGAA | 1 cut(s) | 582 |
| BstC8I | GCNNGC | 2 cut(s) | 102, 621 |
| BstDEI | CTNAG | 1 cut(s) | 140 |
| BstF5I | GGATG | 1 cut(s) | 460 |
| BstFNI | CGCG | 1 cut(s) | 452 |
| BstHHI | GCGC | 1 cut(s) | 172 |
| BstKTI | GATC | 6 cut(s) | 181, 251, 334, 346, 409, 802 |
| BstMAI | GTCTC | 1 cut(s) | 441 |
| BstMBI | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 449, 476, 512, 676 |
| BstNSI | RCATGY | 4 cut(s) | 10, 44, 104, 515 |
| BstSLI | GKGCMC | 1 cut(s) | 795 |
| BstUI | CGCG | 1 cut(s) | 452 |
| BstV1I | GCAGC | 2 cut(s) | 371, 539 |
| BstX2I | RGATCY | 1 cut(s) | 343 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 354 |
| BstYI | RGATCY | 1 cut(s) | 343 |
| BsuRI | GGCC | 1 cut(s) | 375 |
| BtsCI | GGATG | 1 cut(s) | 460 |
| BtsI | GCAGTG | 2 cut(s) | 72, 480 |
| BtsIMutI | CAGTG | 5 cut(s) | 24, 72, 224, 354, 480 |
| Cac8I | GCNNGC | 2 cut(s) | 102, 621 |
| CfoI | GCGC | 1 cut(s) | 172 |
| CseI | GACGC | 2 cut(s) | 458, 821 |
| Csp6I | GTAC | 3 cut(s) | 113, 159, 648 |
| CviAII | CATG | 6 cut(s) | 7, 41, 101, 257, 290, 512 |
| CviJI | RGCY | 9 cut(s) | 71, 139, 203, 375, 428, 506, 530, 545, 693 |
| CviKI_1 | RGCY | 9 cut(s) | 71, 139, 203, 375, 428, 506, 530, 545, 693 |
| CviQI | GTAC | 3 cut(s) | 113, 159, 648 |
| DdeI | CTNAG | 1 cut(s) | 140 |
| DpnI | GATC | 6 cut(s) | 180, 250, 333, 345, 408, 801 |
| DpnII | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| Eco130I | CCWWGG | 1 cut(s) | 713 |
| Eco57I | CTGAAG | 1 cut(s) | 659 |
| EcoT14I | CCWWGG | 1 cut(s) | 713 |
| ErhI | CCWWGG | 1 cut(s) | 713 |
| Esp3I | CGTCTC | 1 cut(s) | 441 |
| FaeI | CATG | 6 cut(s) | 10, 44, 104, 260, 293, 515 |
| FaqI | GGGAC | 3 cut(s) | 577, 602, 840 |
| FatI | CATG | 6 cut(s) | 6, 40, 100, 256, 289, 511 |
| FauI | CCCGC | 1 cut(s) | 333 |
| Fnu4HI | GCNGC | 4 cut(s) | 360, 376, 471, 528 |
| FokI | GGATG | 1 cut(s) | 467 |
| Fsp4HI | GCNGC | 4 cut(s) | 360, 376, 471, 528 |
| FspBI | CTAG | 2 cut(s) | 690, 714 |
| GlaI | GCGC | 1 cut(s) | 171 |
| GluI | GCNGC | 4 cut(s) | 360, 376, 471, 528 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HaeIII | GGCC | 1 cut(s) | 375 |
| HgaI | GACGC | 2 cut(s) | 458, 821 |
| HhaI | GCGC | 1 cut(s) | 172 |
| Hin1I | GRCGYC | 1 cut(s) | 813 |
| Hin1II | CATG | 6 cut(s) | 10, 44, 104, 260, 293, 515 |
| Hin6I | GCGC | 1 cut(s) | 170 |
| HinP1I | GCGC | 1 cut(s) | 170 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HinfI | GANTC | 2 cut(s) | 240, 590 |
| HphI | GGTGA | 1 cut(s) | 29 |
| Hpy166II | GTNNAC | 2 cut(s) | 93, 769 |
| Hpy188III | TCNNGA | 2 cut(s) | 533, 809 |
| Hpy8I | GTNNAC | 2 cut(s) | 93, 769 |
| HpyAV | CCTTC | 3 cut(s) | 124, 530, 578 |
| HpyCH4III | ACNGT | 4 cut(s) | 228, 282, 369, 684 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 449, 476, 512, 676 |
| HpyF3I | CTNAG | 1 cut(s) | 140 |
| Hsp92I | GRCGYC | 1 cut(s) | 813 |
| Hsp92II | CATG | 6 cut(s) | 10, 44, 104, 260, 293, 515 |
| HspAI | GCGC | 1 cut(s) | 170 |
| KpnI | GGTACC | 1 cut(s) | 651 |
| Kzo9I | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| LmnI | GCTCC | 1 cut(s) | 398 |
| Lsp1109I | GCAGC | 2 cut(s) | 371, 539 |
| LweI | GCATC | 2 cut(s) | 578, 679 |
| MaeI | CTAG | 2 cut(s) | 690, 714 |
| MaeIII | GTNAC | 2 cut(s) | 17, 325 |
| MalI | GATC | 6 cut(s) | 180, 250, 333, 345, 408, 801 |
| MboI | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| MboII | GAAGA | 4 cut(s) | 571, 665, 671, 864 |
| MflI | RGATCY | 1 cut(s) | 343 |
| MhlI | GDGCHC | 2 cut(s) | 37, 795 |
| MluCI | AATT | 4 cut(s) | 293, 383, 519, 704 |
| MlyI | GAGTC | 2 cut(s) | 249, 584 |
| MnlI | CCTC | 6 cut(s) | 148, 253, 389, 416, 452, 781 |
| MseI | TTAA | 2 cut(s) | 387, 833 |
| MslI | CAYNNNNRTG | 1 cut(s) | 229 |
| MvnI | CGCG | 1 cut(s) | 452 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 449, 476, 512, 676 |
| NdeII | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| NlaIII | CATG | 6 cut(s) | 10, 44, 104, 260, 293, 515 |
| NlaIV | GGNNCC | 3 cut(s) | 345, 649, 792 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| NspI | RCATGY | 4 cut(s) | 10, 44, 104, 515 |
| NspV | TTCGAA | 1 cut(s) | 582 |
| OliI | CACNNNNGTG | 1 cut(s) | 229 |
| PaeI | GCATGC | 1 cut(s) | 104 |
| PkrI | GCNGC | 4 cut(s) | 361, 377, 472, 529 |
| PleI | GAGTC | 2 cut(s) | 248, 584 |
| PpsI | GAGTC | 2 cut(s) | 248, 584 |
| PspN4I | GGNNCC | 3 cut(s) | 345, 649, 792 |
| PsuI | RGATCY | 1 cut(s) | 343 |
| RsaI | GTAC | 3 cut(s) | 114, 160, 649 |
| RsaNI | GTAC | 3 cut(s) | 113, 159, 648 |
| RseI | CAYNNNNRTG | 1 cut(s) | 229 |
| SaqAI | TTAA | 2 cut(s) | 387, 833 |
| SatI | GCNGC | 4 cut(s) | 360, 376, 471, 528 |
| Sau3AI | GATC | 6 cut(s) | 178, 248, 331, 343, 406, 799 |
| SchI | GAGTC | 2 cut(s) | 249, 584 |
| SduI | GDGCHC | 2 cut(s) | 37, 795 |
| SetI | ASST | 6 cut(s) | 114, 264, 463, 532, 695, 792 |
| SfaNI | GCATC | 2 cut(s) | 578, 679 |
| SfuI | TTCGAA | 1 cut(s) | 582 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 229 |
| SphI | GCATGC | 1 cut(s) | 104 |
| Sse9I | AATT | 4 cut(s) | 293, 383, 519, 704 |
| SsiI | CCGC | 4 cut(s) | 340, 376, 452, 470 |
| SspI | AATATT | 1 cut(s) | 82 |
| SspMI | CTAG | 2 cut(s) | 690, 714 |
| StyI | CCWWGG | 1 cut(s) | 713 |
| TaaI | ACNGT | 4 cut(s) | 228, 282, 369, 684 |
| TaqI | TCGA | 2 cut(s) | 217, 582 |
| TasI | AATT | 4 cut(s) | 293, 383, 519, 704 |
| TauI | GCSGC | 2 cut(s) | 378, 473 |
| Tru1I | TTAA | 2 cut(s) | 387, 833 |
| Tru9I | TTAA | 2 cut(s) | 387, 833 |
| TscAI | CASTG | 5 cut(s) | 31, 72, 231, 354, 480 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| TseI | GCWGC | 2 cut(s) | 359, 527 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 2 cut(s) | 143, 306 |
| TspGWI | ACGGA | 1 cut(s) | 306 |
| TspRI | CASTG | 5 cut(s) | 31, 72, 231, 354, 480 |
| XapI | RAATTY | 3 cut(s) | 293, 383, 519 |
| XceI | RCATGY | 4 cut(s) | 10, 44, 104, 515 |
| XmaJI | CCTAGG | 1 cut(s) | 713 |
| XspI | CTAG | 2 cut(s) | 690, 714 |