Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 381 |
| AccB1I | GGYRCC | 1 cut(s) | 381 |
| AccI | GTMKAC | 1 cut(s) | 365 |
| AciI | CCGC | 1 cut(s) | 378 |
| AclI | AACGTT | 1 cut(s) | 763 |
| AclWI | GGATC | 1 cut(s) | 207 |
| AfaI | GTAC | 2 cut(s) | 383, 464 |
| AflII | CTTAAG | 1 cut(s) | 527 |
| AflIII | ACRYGT | 1 cut(s) | 398 |
| AgsI | TTSAA | 5 cut(s) | 28, 326, 617, 637, 682 |
| AjnI | CCWGG | 1 cut(s) | 750 |
| AluBI | AGCT | 4 cut(s) | 24, 247, 265, 577 |
| AluI | AGCT | 4 cut(s) | 24, 247, 265, 577 |
| Alw21I | GWGCWC | 1 cut(s) | 8 |
| Alw26I | GTCTC | 1 cut(s) | 514 |
| AlwI | GGATC | 1 cut(s) | 207 |
| AoxI | GGCC | 3 cut(s) | 167, 674, 690 |
| ApeKI | GCWGC | 2 cut(s) | 375, 574 |
| Asp718I | GGTACC | 1 cut(s) | 381 |
| AspS9I | GGNCC | 2 cut(s) | 674, 690 |
| AsuHPI | GGTGA | 1 cut(s) | 168 |
| AsuNHI | GCTAGC | 1 cut(s) | 20 |
| BanI | GGYRCC | 1 cut(s) | 381 |
| BbsI | GAAGAC | 2 cut(s) | 293, 423 |
| Bbv12I | GWGCWC | 1 cut(s) | 8 |
| BbvI | GCAGC | 2 cut(s) | 387, 586 |
| BccI | CCATC | 2 cut(s) | 178, 286 |
| BciT130I | CCWGG | 1 cut(s) | 752 |
| BcoDI | GTCTC | 1 cut(s) | 514 |
| BfaI | CTAG | 3 cut(s) | 21, 248, 297 |
| BfrI | CTTAAG | 1 cut(s) | 527 |
| BisI | GCNGC | 2 cut(s) | 376, 575 |
| BlsI | GCNGC | 2 cut(s) | 377, 576 |
| BmcAI | AGTACT | 1 cut(s) | 464 |
| Bme1390I | CCNGG | 1 cut(s) | 752 |
| BmgT120I | GGNCC | 2 cut(s) | 674, 690 |
| BmiI | GGNNCC | 1 cut(s) | 383 |
| BmrFI | CCNGG | 1 cut(s) | 752 |
| BmtI | GCTAGC | 1 cut(s) | 24 |
| BpiI | GAAGAC | 2 cut(s) | 293, 423 |
| BpmI | CTGGAG | 3 cut(s) | 487, 599, 734 |
| Bsa29I | ATCGAT | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 693 |
| Bse1I | ACTGG | 1 cut(s) | 470 |
| BseBI | CCWGG | 1 cut(s) | 752 |
| BseCI | ATCGAT | 1 cut(s) | 285 |
| BseDI | CCNNGG | 2 cut(s) | 140, 693 |
| BseGI | GGATG | 1 cut(s) | 139 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BseNI | ACTGG | 1 cut(s) | 470 |
| BseXI | GCAGC | 2 cut(s) | 387, 586 |
| BseYI | CCCAGC | 1 cut(s) | 703 |
| BsgI | GTGCAG | 1 cut(s) | 593 |
| BshFI | GGCC | 3 cut(s) | 169, 676, 692 |
| BshNI | GGYRCC | 1 cut(s) | 381 |
| BshVI | ATCGAT | 1 cut(s) | 285 |
| BsiHKAI | GWGCWC | 1 cut(s) | 8 |
| BslFI | GGGAC | 2 cut(s) | 427, 524 |
| BsmAI | GTCTC | 1 cut(s) | 514 |
| BsmFI | GGGAC | 2 cut(s) | 427, 524 |
| BsnI | GGCC | 3 cut(s) | 169, 676, 692 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp143I | GATC | 2 cut(s) | 199, 282 |
| Bsp19I | CCATGG | 1 cut(s) | 693 |
| BspACI | CCGC | 1 cut(s) | 378 |
| BspANI | GGCC | 3 cut(s) | 169, 676, 692 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspDI | ATCGAT | 1 cut(s) | 285 |
| BspLI | GGNNCC | 1 cut(s) | 383 |
| BspOI | GCTAGC | 1 cut(s) | 24 |
| BspPI | GGATC | 1 cut(s) | 207 |
| BspT107I | GGYRCC | 1 cut(s) | 381 |
| BspTI | CTTAAG | 1 cut(s) | 527 |
| BsrI | ACTGG | 1 cut(s) | 470 |
| BssECI | CCNNGG | 2 cut(s) | 140, 693 |
| BssMI | GATC | 2 cut(s) | 199, 282 |
| BssNAI | GTATAC | 1 cut(s) | 366 |
| BssT1I | CCWWGG | 1 cut(s) | 693 |
| Bst1107I | GTATAC | 1 cut(s) | 366 |
| Bst2UI | CCWGG | 1 cut(s) | 752 |
| Bst4CI | ACNGT | 2 cut(s) | 370, 510 |
| Bst6I | CTCTTC | 2 cut(s) | 47, 156 |
| BstAFI | CTTAAG | 1 cut(s) | 527 |
| BstC8I | GCNNGC | 1 cut(s) | 22 |
| BstDEI | CTNAG | 1 cut(s) | 273 |
| BstDSI | CCRYGG | 2 cut(s) | 140, 693 |
| BstF5I | GGATG | 1 cut(s) | 139 |
| BstKTI | GATC | 2 cut(s) | 202, 285 |
| BstMAI | GTCTC | 1 cut(s) | 514 |
| BstMBI | GATC | 2 cut(s) | 199, 282 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 673 |
| BstNI | CCWGG | 1 cut(s) | 752 |
| BstNSI | RCATGY | 3 cut(s) | 402, 632, 739 |
| BstSCI | CCNGG | 1 cut(s) | 750 |
| BstV1I | GCAGC | 2 cut(s) | 387, 586 |
| BstV2I | GAAGAC | 2 cut(s) | 293, 423 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BstZ17I | GTATAC | 1 cut(s) | 366 |
| Bsu15I | ATCGAT | 1 cut(s) | 285 |
| BsuRI | GGCC | 3 cut(s) | 169, 676, 692 |
| BsuTUI | ATCGAT | 1 cut(s) | 285 |
| BtgI | CCRYGG | 2 cut(s) | 140, 693 |
| BtsCI | GGATG | 1 cut(s) | 139 |
| Cac8I | GCNNGC | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 2 cut(s) | 674, 690 |
| ClaI | ATCGAT | 1 cut(s) | 285 |
| Csp6I | GTAC | 2 cut(s) | 382, 463 |
| CviAII | CATG | 8 cut(s) | 386, 399, 553, 604, 629, 642, 694, 736 |
| CviQI | GTAC | 2 cut(s) | 382, 463 |
| DdeI | CTNAG | 1 cut(s) | 273 |
| DpnI | GATC | 2 cut(s) | 201, 284 |
| DpnII | GATC | 2 cut(s) | 199, 282 |
| DraI | TTTAAA | 1 cut(s) | 82 |
| Eam1104I | CTCTTC | 2 cut(s) | 47, 156 |
| EarI | CTCTTC | 2 cut(s) | 47, 156 |
| Eco130I | CCWWGG | 1 cut(s) | 693 |
| Eco147I | AGGCCT | 1 cut(s) | 169 |
| EcoRII | CCWGG | 1 cut(s) | 750 |
| EcoT14I | CCWWGG | 1 cut(s) | 693 |
| ErhI | CCWWGG | 1 cut(s) | 693 |
| FaeI | CATG | 8 cut(s) | 389, 402, 556, 607, 632, 645, 697, 739 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 62, 94 |
| FaqI | GGGAC | 2 cut(s) | 427, 524 |
| FatI | CATG | 8 cut(s) | 385, 398, 552, 603, 628, 641, 693, 735 |
| FauI | CCCGC | 1 cut(s) | 371 |
| FauNDI | CATATG | 1 cut(s) | 515 |
| FblI | GTMKAC | 1 cut(s) | 365 |
| Fnu4HI | GCNGC | 2 cut(s) | 376, 575 |
| FokI | GGATG | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 2 cut(s) | 376, 575 |
| FspBI | CTAG | 3 cut(s) | 21, 248, 297 |
| GluI | GCNGC | 2 cut(s) | 376, 575 |
| GsaI | CCCAGC | 1 cut(s) | 707 |
| GsuI | CTGGAG | 3 cut(s) | 487, 599, 734 |
| HaeIII | GGCC | 3 cut(s) | 169, 676, 692 |
| Hin1II | CATG | 8 cut(s) | 389, 402, 556, 607, 632, 645, 697, 739 |
| HincII | GTYRAC | 1 cut(s) | 757 |
| HindII | GTYRAC | 1 cut(s) | 757 |
| HinfI | GANTC | 4 cut(s) | 38, 617, 727, 743 |
| HphI | GGTGA | 1 cut(s) | 168 |
| Hpy166II | GTNNAC | 2 cut(s) | 366, 757 |
| Hpy188III | TCNNGA | 1 cut(s) | 731 |
| Hpy8I | GTNNAC | 2 cut(s) | 366, 757 |
| HpyAV | CCTTC | 2 cut(s) | 64, 475 |
| HpyCH4III | ACNGT | 2 cut(s) | 370, 510 |
| HpyCH4IV | ACGT | 3 cut(s) | 428, 565, 763 |
| HpyCH4V | TGCA | 5 cut(s) | 574, 603, 628, 650, 718 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 673 |
| HpyF3I | CTNAG | 1 cut(s) | 273 |
| HpySE526I | ACGT | 3 cut(s) | 428, 565, 763 |
| Hsp92II | CATG | 8 cut(s) | 389, 402, 556, 607, 632, 645, 697, 739 |
| KpnI | GGTACC | 1 cut(s) | 385 |
| Kzo9I | GATC | 2 cut(s) | 199, 282 |
| LmnI | GCTCC | 1 cut(s) | 262 |
| LpnPI | CCDG | 9 cut(s) | 86, 230, 451, 563, 606, 716, 717, 737, 764 |
| Lsp1109I | GCAGC | 2 cut(s) | 387, 586 |
| MaeI | CTAG | 3 cut(s) | 21, 248, 297 |
| MaeII | ACGT | 3 cut(s) | 428, 565, 763 |
| MalI | GATC | 2 cut(s) | 201, 284 |
| MboI | GATC | 2 cut(s) | 199, 282 |
| MboII | GAAGA | 6 cut(s) | 64, 143, 293, 338, 423, 426 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MluCI | AATT | 1 cut(s) | 655 |
| MlyI | GAGTC | 1 cut(s) | 737 |
| MmeI | TCCRAC | 2 cut(s) | 174, 385 |
| MseI | TTAA | 7 cut(s) | 81, 222, 393, 528, 653, 686, 766 |
| MspA1I | CMGCKG | 2 cut(s) | 378, 577 |
| MspCI | CTTAAG | 1 cut(s) | 527 |
| MspR9I | CCNGG | 1 cut(s) | 752 |
| MvaI | CCWGG | 1 cut(s) | 752 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 673 |
| NcoI | CCATGG | 1 cut(s) | 693 |
| NdeI | CATATG | 1 cut(s) | 515 |
| NdeII | GATC | 2 cut(s) | 199, 282 |
| NheI | GCTAGC | 1 cut(s) | 20 |
| NlaIII | CATG | 8 cut(s) | 389, 402, 556, 607, 632, 645, 697, 739 |
| NlaIV | GGNNCC | 1 cut(s) | 383 |
| NspI | RCATGY | 3 cut(s) | 402, 632, 739 |
| PceI | AGGCCT | 1 cut(s) | 169 |
| PciI | ACATGT | 1 cut(s) | 398 |
| PfeI | GAWTC | 3 cut(s) | 38, 617, 727 |
| PkrI | GCNGC | 2 cut(s) | 377, 576 |
| PleI | GAGTC | 1 cut(s) | 737 |
| PpsI | GAGTC | 1 cut(s) | 737 |
| PscI | ACATGT | 1 cut(s) | 398 |
| Psp1406I | AACGTT | 1 cut(s) | 763 |
| Psp6I | CCWGG | 1 cut(s) | 750 |
| PspFI | CCCAGC | 1 cut(s) | 703 |
| PspGI | CCWGG | 1 cut(s) | 750 |
| PspN4I | GGNNCC | 1 cut(s) | 383 |
| PspPI | GGNCC | 2 cut(s) | 674, 690 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| PvuII | CAGCTG | 1 cut(s) | 577 |
| RsaI | GTAC | 2 cut(s) | 383, 464 |
| RsaNI | GTAC | 2 cut(s) | 382, 463 |
| SaqAI | TTAA | 7 cut(s) | 81, 222, 393, 528, 653, 686, 766 |
| SatI | GCNGC | 2 cut(s) | 376, 575 |
| Sau3AI | GATC | 2 cut(s) | 199, 282 |
| Sau96I | GGNCC | 2 cut(s) | 674, 690 |
| ScaI | AGTACT | 1 cut(s) | 464 |
| SchI | GAGTC | 1 cut(s) | 737 |
| ScrFI | CCNGG | 1 cut(s) | 752 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SmlI | CTYRAG | 1 cut(s) | 527 |
| SmoI | CTYRAG | 1 cut(s) | 527 |
| Sse9I | AATT | 1 cut(s) | 655 |
| SseBI | AGGCCT | 1 cut(s) | 169 |
| SsiI | CCGC | 1 cut(s) | 378 |
| SspI | AATATT | 2 cut(s) | 121, 535 |
| SspMI | CTAG | 3 cut(s) | 21, 248, 297 |
| StuI | AGGCCT | 1 cut(s) | 169 |
| StyD4I | CCNGG | 1 cut(s) | 750 |
| StyI | CCWWGG | 1 cut(s) | 693 |
| TaaI | ACNGT | 2 cut(s) | 370, 510 |
| TaiI | ACGT | 3 cut(s) | 431, 568, 766 |
| TaqI | TCGA | 3 cut(s) | 285, 479, 505 |
| TasI | AATT | 1 cut(s) | 655 |
| TatI | WGTACW | 1 cut(s) | 462 |
| TfiI | GAWTC | 3 cut(s) | 38, 617, 727 |
| Tru1I | TTAA | 7 cut(s) | 81, 222, 393, 528, 653, 686, 766 |
| Tru9I | TTAA | 7 cut(s) | 81, 222, 393, 528, 653, 686, 766 |
| TseI | GCWGC | 2 cut(s) | 375, 574 |
| TspDTI | ATGAA | 1 cut(s) | 502 |
| Vha464I | CTTAAG | 1 cut(s) | 527 |
| XceI | RCATGY | 3 cut(s) | 402, 632, 739 |
| XmiI | GTMKAC | 1 cut(s) | 365 |
| XspI | CTAG | 3 cut(s) | 21, 248, 297 |
| ZrmI | AGTACT | 1 cut(s) | 464 |