Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 78 - 199 | 4.2e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 759 |
| AcsI | RAATTY | 1 cut(s) | 416 |
| AdeI | CACNNNGTG | 1 cut(s) | 198 |
| AfaI | GTAC | 3 cut(s) | 110, 155, 660 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 215, 774 |
| AgsI | TTSAA | 1 cut(s) | 533 |
| AjnI | CCWGG | 2 cut(s) | 466, 703 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 76, 108 |
| AluBI | AGCT | 2 cut(s) | 317, 380 |
| AluI | AGCT | 2 cut(s) | 317, 380 |
| Alw26I | GTCTC | 1 cut(s) | 629 |
| AlwI | GGATC | 1 cut(s) | 759 |
| AoxI | GGCC | 2 cut(s) | 185, 382 |
| ApeKI | GCWGC | 2 cut(s) | 314, 452 |
| ApoI | RAATTY | 1 cut(s) | 416 |
| AseI | ATTAAT | 1 cut(s) | 231 |
| AspS9I | GGNCC | 2 cut(s) | 464, 701 |
| AsuC2I | CCSGG | 1 cut(s) | 769 |
| AvaII | GGWCC | 2 cut(s) | 464, 701 |
| BaeGI | GKGCMC | 1 cut(s) | 305 |
| BbvCI | CCTCAGC | 1 cut(s) | 366 |
| BbvI | GCAGC | 2 cut(s) | 326, 439 |
| BccI | CCATC | 2 cut(s) | 165, 233 |
| BciT130I | CCWGG | 2 cut(s) | 468, 705 |
| BciVI | GTATCC | 1 cut(s) | 407 |
| BcnI | CCSGG | 1 cut(s) | 769 |
| BcoDI | GTCTC | 1 cut(s) | 629 |
| BfaI | CTAG | 2 cut(s) | 600, 793 |
| BfuI | GTATCC | 1 cut(s) | 407 |
| BisI | GCNGC | 2 cut(s) | 315, 453 |
| BlpI | GCTNAGC | 1 cut(s) | 780 |
| BlsI | GCNGC | 2 cut(s) | 316, 454 |
| Bme1390I | CCNGG | 3 cut(s) | 468, 705, 769 |
| Bme18I | GGWCC | 2 cut(s) | 464, 701 |
| BmgT120I | GGNCC | 2 cut(s) | 464, 701 |
| BmiI | GGNNCC | 1 cut(s) | 702 |
| BmrFI | CCNGG | 3 cut(s) | 468, 705, 769 |
| BmsI | GCATC | 1 cut(s) | 352 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 419, 451 |
| Bpu10I | CCTNAGC | 1 cut(s) | 366 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 780 |
| BpuMI | CCSGG | 1 cut(s) | 769 |
| Bsa29I | ATCGAT | 2 cut(s) | 237, 763 |
| BsaJI | CCNNGG | 2 cut(s) | 403, 467 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 215, 774 |
| Bse3DI | GCAATG | 1 cut(s) | 731 |
| BseBI | CCWGG | 2 cut(s) | 468, 705 |
| BseCI | ATCGAT | 2 cut(s) | 237, 763 |
| BseDI | CCNNGG | 2 cut(s) | 403, 467 |
| BseGI | GGATG | 4 cut(s) | 10, 157, 367, 661 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 215, 774 |
| BseMI | GCAATG | 1 cut(s) | 731 |
| BseMII | CTCAG | 3 cut(s) | 357, 360, 771 |
| BseSI | GKGCMC | 1 cut(s) | 305 |
| BseXI | GCAGC | 2 cut(s) | 326, 439 |
| BsgI | GTGCAG | 2 cut(s) | 394, 438 |
| BshFI | GGCC | 2 cut(s) | 187, 384 |
| BshVI | ATCGAT | 2 cut(s) | 237, 763 |
| BsiSI | CCGG | 1 cut(s) | 768 |
| BslFI | GGGAC | 1 cut(s) | 700 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 215, 774 |
| BsmAI | GTCTC | 1 cut(s) | 629 |
| BsmFI | GGGAC | 1 cut(s) | 700 |
| BsmI | GAATGC | 1 cut(s) | 209 |
| BsnI | GGCC | 2 cut(s) | 187, 384 |
| Bsp1286I | GDGCHC | 1 cut(s) | 305 |
| Bsp1407I | TGTACA | 1 cut(s) | 108 |
| Bsp143I | GATC | 1 cut(s) | 764 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 780 |
| BspANI | GGCC | 2 cut(s) | 187, 384 |
| BspCNI | CTCAG | 3 cut(s) | 358, 359, 772 |
| BspDI | ATCGAT | 2 cut(s) | 237, 763 |
| BspLI | GGNNCC | 1 cut(s) | 702 |
| BspPI | GGATC | 1 cut(s) | 759 |
| BsrDI | GCAATG | 1 cut(s) | 731 |
| BsrGI | TGTACA | 1 cut(s) | 108 |
| BssECI | CCNNGG | 2 cut(s) | 403, 467 |
| BssMI | GATC | 1 cut(s) | 764 |
| BssT1I | CCWWGG | 1 cut(s) | 403 |
| Bst2UI | CCWGG | 2 cut(s) | 468, 705 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 596 |
| BstAUI | TGTACA | 1 cut(s) | 108 |
| BstC8I | GCNNGC | 4 cut(s) | 339, 373, 382, 588 |
| BstDEI | CTNAG | 3 cut(s) | 346, 366, 780 |
| BstF5I | GGATG | 4 cut(s) | 10, 157, 367, 661 |
| BstKTI | GATC | 1 cut(s) | 767 |
| BstMAI | GTCTC | 1 cut(s) | 629 |
| BstMBI | GATC | 1 cut(s) | 764 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 251, 320, 347, 377, 381, 596 |
| BstNI | CCWGG | 2 cut(s) | 468, 705 |
| BstNSI | RCATGY | 1 cut(s) | 341 |
| BstSCI | CCNGG | 3 cut(s) | 466, 703, 767 |
| BstSLI | GKGCMC | 1 cut(s) | 305 |
| BstV1I | GCAGC | 2 cut(s) | 326, 439 |
| Bsu15I | ATCGAT | 2 cut(s) | 237, 763 |
| BsuI | GTATCC | 1 cut(s) | 407 |
| BsuRI | GGCC | 2 cut(s) | 187, 384 |
| BsuTUI | ATCGAT | 2 cut(s) | 237, 763 |
| BtsCI | GGATG | 4 cut(s) | 10, 157, 367, 661 |
| BtsIMutI | CAGTG | 1 cut(s) | 686 |
| Cac8I | GCNNGC | 4 cut(s) | 339, 373, 382, 588 |
| Cfr13I | GGNCC | 2 cut(s) | 464, 701 |
| ClaI | ATCGAT | 2 cut(s) | 237, 763 |
| Csp6I | GTAC | 3 cut(s) | 109, 154, 659 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 389, 424 |
| CviAII | CATG | 4 cut(s) | 40, 106, 112, 338 |
| CviJI | RGCY | 9 cut(s) | 44, 187, 223, 317, 380, 384, 586, 779, 784 |
| CviKI_1 | RGCY | 9 cut(s) | 44, 187, 223, 317, 380, 384, 586, 779, 784 |
| CviQI | GTAC | 3 cut(s) | 109, 154, 659 |
| DdeI | CTNAG | 3 cut(s) | 346, 366, 780 |
| DpnI | GATC | 1 cut(s) | 766 |
| DpnII | GATC | 1 cut(s) | 764 |
| DraIII | CACNNNGTG | 1 cut(s) | 198 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Eco130I | CCWWGG | 1 cut(s) | 403 |
| Eco147I | AGGCCT | 1 cut(s) | 187 |
| Eco47I | GGWCC | 2 cut(s) | 464, 701 |
| EcoRII | CCWGG | 2 cut(s) | 466, 703 |
| EcoT14I | CCWWGG | 1 cut(s) | 403 |
| ErhI | CCWWGG | 1 cut(s) | 403 |
| FaeI | CATG | 4 cut(s) | 43, 109, 115, 341 |
| FaqI | GGGAC | 1 cut(s) | 700 |
| FatI | CATG | 4 cut(s) | 39, 105, 111, 337 |
| Fnu4HI | GCNGC | 2 cut(s) | 315, 453 |
| FokI | GGATG | 4 cut(s) | 17, 144, 374, 668 |
| Fsp4HI | GCNGC | 2 cut(s) | 315, 453 |
| FspBI | CTAG | 2 cut(s) | 600, 793 |
| GluI | GCNGC | 2 cut(s) | 315, 453 |
| HaeIII | GGCC | 2 cut(s) | 187, 384 |
| HapII | CCGG | 1 cut(s) | 768 |
| Hin1II | CATG | 4 cut(s) | 43, 109, 115, 341 |
| HincII | GTYRAC | 1 cut(s) | 101 |
| HindII | GTYRAC | 1 cut(s) | 101 |
| HinfI | GANTC | 3 cut(s) | 296, 434, 637 |
| HpaII | CCGG | 1 cut(s) | 768 |
| Hpy166II | GTNNAC | 1 cut(s) | 101 |
| Hpy188I | TCNGA | 5 cut(s) | 19, 162, 213, 290, 484 |
| Hpy188III | TCNNGA | 4 cut(s) | 82, 193, 445, 653 |
| Hpy8I | GTNNAC | 1 cut(s) | 101 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4V | TGCA | 9 cut(s) | 314, 337, 341, 375, 455, 510, 578, 590, 736 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 251, 320, 347, 377, 381, 596 |
| HpyF3I | CTNAG | 3 cut(s) | 346, 366, 780 |
| Hsp92II | CATG | 4 cut(s) | 43, 109, 115, 341 |
| Kzo9I | GATC | 1 cut(s) | 764 |
| LmnI | GCTCC | 1 cut(s) | 20 |
| Lsp1109I | GCAGC | 2 cut(s) | 326, 439 |
| LweI | GCATC | 1 cut(s) | 352 |
| MaeI | CTAG | 2 cut(s) | 600, 793 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 766 |
| MboI | GATC | 1 cut(s) | 764 |
| MboII | GAAGA | 4 cut(s) | 152, 187, 380, 516 |
| MfeI | CAATTG | 1 cut(s) | 149 |
| MhlI | GDGCHC | 1 cut(s) | 305 |
| MluCI | AATT | 5 cut(s) | 54, 149, 228, 416, 475 |
| MlyI | GAGTC | 2 cut(s) | 428, 631 |
| MmeI | TCCRAC | 2 cut(s) | 247, 389 |
| MnlI | CCTC | 9 cut(s) | 177, 213, 219, 263, 361, 452, 478, 661, 795 |
| MseI | TTAA | 5 cut(s) | 53, 225, 231, 354, 540 |
| MslI | CAYNNNNRTG | 1 cut(s) | 110 |
| MspI | CCGG | 1 cut(s) | 768 |
| MspR9I | CCNGG | 3 cut(s) | 468, 705, 769 |
| MunI | CAATTG | 1 cut(s) | 149 |
| Mva1269I | GAATGC | 1 cut(s) | 209 |
| MvaI | CCWGG | 2 cut(s) | 468, 705 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 251, 320, 347, 377, 381, 596 |
| NciI | CCSGG | 1 cut(s) | 769 |
| NdeII | GATC | 1 cut(s) | 764 |
| NlaIII | CATG | 4 cut(s) | 43, 109, 115, 341 |
| NlaIV | GGNNCC | 1 cut(s) | 702 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| NspI | RCATGY | 1 cut(s) | 341 |
| PaeI | GCATGC | 1 cut(s) | 341 |
| PceI | AGGCCT | 1 cut(s) | 187 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 769 |
| PctI | GAATGC | 1 cut(s) | 209 |
| PfeI | GAWTC | 1 cut(s) | 296 |
| PkrI | GCNGC | 2 cut(s) | 316, 454 |
| PleI | GAGTC | 2 cut(s) | 428, 631 |
| PpsI | GAGTC | 2 cut(s) | 428, 631 |
| PshBI | ATTAAT | 1 cut(s) | 231 |
| Psp6I | CCWGG | 2 cut(s) | 466, 703 |
| PspGI | CCWGG | 2 cut(s) | 466, 703 |
| PspN4I | GGNNCC | 1 cut(s) | 702 |
| PspPI | GGNCC | 2 cut(s) | 464, 701 |
| RsaI | GTAC | 3 cut(s) | 110, 155, 660 |
| RsaNI | GTAC | 3 cut(s) | 109, 154, 659 |
| RseI | CAYNNNNRTG | 1 cut(s) | 110 |
| SaqAI | TTAA | 5 cut(s) | 53, 225, 231, 354, 540 |
| SatI | GCNGC | 2 cut(s) | 315, 453 |
| Sau3AI | GATC | 1 cut(s) | 764 |
| Sau96I | GGNCC | 2 cut(s) | 464, 701 |
| SchI | GAGTC | 2 cut(s) | 428, 631 |
| ScrFI | CCNGG | 3 cut(s) | 468, 705, 769 |
| SduI | GDGCHC | 1 cut(s) | 305 |
| SetI | ASST | 8 cut(s) | 78, 91, 319, 382, 409, 489, 597, 709 |
| SfaNI | GCATC | 1 cut(s) | 352 |
| SinI | GGWCC | 2 cut(s) | 464, 701 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 110 |
| SphI | GCATGC | 1 cut(s) | 341 |
| Sse9I | AATT | 5 cut(s) | 54, 149, 228, 416, 475 |
| SseBI | AGGCCT | 1 cut(s) | 187 |
| SspI | AATATT | 1 cut(s) | 748 |
| SspMI | CTAG | 2 cut(s) | 600, 793 |
| StuI | AGGCCT | 1 cut(s) | 187 |
| StyD4I | CCNGG | 3 cut(s) | 466, 703, 767 |
| StyI | CCWWGG | 1 cut(s) | 403 |
| TaqI | TCGA | 2 cut(s) | 237, 763 |
| TasI | AATT | 5 cut(s) | 54, 149, 228, 416, 475 |
| TatI | WGTACW | 2 cut(s) | 108, 658 |
| TfiI | GAWTC | 1 cut(s) | 296 |
| Tru1I | TTAA | 5 cut(s) | 53, 225, 231, 354, 540 |
| Tru9I | TTAA | 5 cut(s) | 53, 225, 231, 354, 540 |
| TscAI | CASTG | 1 cut(s) | 686 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| TseI | GCWGC | 2 cut(s) | 314, 452 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspDTI | ATGAA | 3 cut(s) | 28, 78, 309 |
| TspGWI | ACGGA | 3 cut(s) | 187, 428, 548 |
| TspRI | CASTG | 1 cut(s) | 686 |
| VpaK11BI | GGWCC | 2 cut(s) | 464, 701 |
| VspI | ATTAAT | 1 cut(s) | 231 |
| XapI | RAATTY | 1 cut(s) | 416 |
| XceI | RCATGY | 1 cut(s) | 341 |
| XspI | CTAG | 2 cut(s) | 600, 793 |