Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 979 |
| Acc36I | ACCTGC | 1 cut(s) | 979 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 69 |
| AccBSI | CCGCTC | 1 cut(s) | 710 |
| AccI | GTMKAC | 1 cut(s) | 550 |
| AciI | CCGC | 2 cut(s) | 645, 710 |
| AclI | AACGTT | 1 cut(s) | 81 |
| AcsI | RAATTY | 1 cut(s) | 873 |
| AcyI | GRCGYC | 2 cut(s) | 26, 112 |
| AfaI | GTAC | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 69, 545 |
| AgsI | TTSAA | 5 cut(s) | 280, 310, 343, 581, 872 |
| AjiI | CACGTC | 1 cut(s) | 158 |
| AjnI | CCWGG | 1 cut(s) | 137 |
| AluBI | AGCT | 5 cut(s) | 216, 299, 575, 695, 933 |
| AluI | AGCT | 5 cut(s) | 216, 299, 575, 695, 933 |
| Alw26I | GTCTC | 1 cut(s) | 959 |
| Ama87I | CYCGRG | 1 cut(s) | 543 |
| AoxI | GGCC | 4 cut(s) | 265, 372, 515, 656 |
| ApaI | GGGCCC | 1 cut(s) | 269 |
| ApeKI | GCWGC | 2 cut(s) | 296, 782 |
| ApoI | RAATTY | 1 cut(s) | 873 |
| AseI | ATTAAT | 3 cut(s) | 561, 684, 1070 |
| AspS9I | GGNCC | 5 cut(s) | 41, 60, 265, 266, 373 |
| AsuHPI | GGTGA | 1 cut(s) | 722 |
| AsuNHI | GCTAGC | 1 cut(s) | 929 |
| AvaI | CYCGRG | 1 cut(s) | 543 |
| AvaII | GGWCC | 2 cut(s) | 41, 60 |
| AxyI | CCTNAGG | 1 cut(s) | 47 |
| BaeGI | GKGCMC | 2 cut(s) | 269, 635 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 437, 470 |
| BanII | GRGCYC | 1 cut(s) | 269 |
| BbsI | GAAGAC | 1 cut(s) | 707 |
| BbvCI | CCTCAGC | 1 cut(s) | 696 |
| BbvI | GCAGC | 2 cut(s) | 308, 769 |
| BccI | CCATC | 1 cut(s) | 413 |
| BciT130I | CCWGG | 1 cut(s) | 139 |
| BcoDI | GTCTC | 1 cut(s) | 959 |
| BfaI | CTAG | 3 cut(s) | 459, 654, 930 |
| BfuAI | ACCTGC | 1 cut(s) | 979 |
| BisI | GCNGC | 3 cut(s) | 297, 645, 783 |
| BlsI | GCNGC | 3 cut(s) | 298, 646, 784 |
| Bme1390I | CCNGG | 1 cut(s) | 139 |
| Bme18I | GGWCC | 2 cut(s) | 41, 60 |
| BmeT110I | CYCGRG | 1 cut(s) | 543 |
| BmgBI | CACGTC | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 5 cut(s) | 41, 60, 265, 266, 373 |
| BmiI | GGNNCC | 2 cut(s) | 43, 267 |
| BmrFI | CCNGG | 1 cut(s) | 139 |
| BmsI | GCATC | 1 cut(s) | 229 |
| BmtI | GCTAGC | 1 cut(s) | 933 |
| BpiI | GAAGAC | 1 cut(s) | 707 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 749, 781 |
| Bpu10I | CCTNAGC | 1 cut(s) | 696 |
| BpuEI | CTTGAG | 1 cut(s) | 773 |
| BsaHI | GRCGYC | 2 cut(s) | 26, 112 |
| BsaJI | CCNNGG | 2 cut(s) | 542, 733 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 69, 545 |
| Bse21I | CCTNAGG | 1 cut(s) | 47 |
| BseBI | CCWGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 2 cut(s) | 542, 733 |
| BseGI | GGATG | 3 cut(s) | 181, 751, 991 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 69, 545 |
| BseMII | CTCAG | 4 cut(s) | 38, 687, 690, 825 |
| BseSI | GKGCMC | 2 cut(s) | 269, 635 |
| BseXI | GCAGC | 2 cut(s) | 308, 769 |
| BseYI | CCCAGC | 1 cut(s) | 299 |
| BsgI | GTGCAG | 2 cut(s) | 724, 768 |
| BshFI | GGCC | 4 cut(s) | 267, 374, 517, 658 |
| BsiHKCI | CYCGRG | 1 cut(s) | 543 |
| BslFI | GGGAC | 3 cut(s) | 317, 522, 1030 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 69, 545 |
| BsmAI | GTCTC | 1 cut(s) | 959 |
| BsmFI | GGGAC | 3 cut(s) | 317, 522, 1030 |
| BsnI | GGCC | 4 cut(s) | 267, 374, 517, 658 |
| BsoBI | CYCGRG | 1 cut(s) | 543 |
| Bsp120I | GGGCCC | 1 cut(s) | 265 |
| Bsp1286I | GDGCHC | 2 cut(s) | 269, 635 |
| BspACI | CCGC | 2 cut(s) | 645, 710 |
| BspANI | GGCC | 4 cut(s) | 267, 374, 517, 658 |
| BspCNI | CTCAG | 4 cut(s) | 39, 688, 689, 824 |
| BspLI | GGNNCC | 2 cut(s) | 43, 267 |
| BspMI | ACCTGC | 1 cut(s) | 979 |
| BspOI | GCTAGC | 1 cut(s) | 933 |
| BsrBI | CCGCTC | 1 cut(s) | 710 |
| BssECI | CCNNGG | 2 cut(s) | 542, 733 |
| BssNI | GRCGYC | 2 cut(s) | 26, 112 |
| BssT1I | CCWWGG | 1 cut(s) | 733 |
| Bst2UI | CCWGG | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 3 cut(s) | 450, 590, 890 |
| Bst6I | CTCTTC | 3 cut(s) | 465, 506, 792 |
| BstACI | GRCGYC | 2 cut(s) | 26, 112 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 926 |
| BstC8I | GCNNGC | 5 cut(s) | 75, 218, 669, 703, 931 |
| BstDEI | CTNAG | 4 cut(s) | 47, 676, 696, 811 |
| BstF5I | GGATG | 3 cut(s) | 181, 751, 991 |
| BstMAI | GTCTC | 1 cut(s) | 959 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 118, 650, 664, 677, 707, 926 |
| BstNI | CCWGG | 1 cut(s) | 139 |
| BstNSI | RCATGY | 4 cut(s) | 77, 186, 224, 671 |
| BstSCI | CCNGG | 1 cut(s) | 137 |
| BstSLI | GKGCMC | 2 cut(s) | 269, 635 |
| BstV1I | GCAGC | 2 cut(s) | 308, 769 |
| BstV2I | GAAGAC | 1 cut(s) | 707 |
| Bsu36I | CCTNAGG | 1 cut(s) | 47 |
| BsuRI | GGCC | 4 cut(s) | 267, 374, 517, 658 |
| BtrI | CACGTC | 1 cut(s) | 158 |
| BtsCI | GGATG | 3 cut(s) | 181, 751, 991 |
| BtsI | GCAGTG | 1 cut(s) | 539 |
| BtsIMutI | CAGTG | 4 cut(s) | 269, 455, 539, 595 |
| BveI | ACCTGC | 1 cut(s) | 979 |
| Cac8I | GCNNGC | 5 cut(s) | 75, 218, 669, 703, 931 |
| Cfr13I | GGNCC | 5 cut(s) | 41, 60, 265, 266, 373 |
| CseI | GACGC | 3 cut(s) | 3, 15, 101 |
| CsiI | ACCWGGT | 1 cut(s) | 137 |
| Csp6I | GTAC | 1 cut(s) | 456 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 258, 293 |
| CviAII | CATG | 7 cut(s) | 74, 122, 183, 221, 370, 442, 668 |
| CviQI | GTAC | 1 cut(s) | 456 |
| DdeI | CTNAG | 4 cut(s) | 47, 676, 696, 811 |
| DraI | TTTAAA | 1 cut(s) | 229 |
| Eam1104I | CTCTTC | 3 cut(s) | 465, 506, 792 |
| EarI | CTCTTC | 3 cut(s) | 465, 506, 792 |
| Eco130I | CCWWGG | 1 cut(s) | 733 |
| Eco147I | AGGCCT | 1 cut(s) | 658 |
| Eco24I | GRGCYC | 1 cut(s) | 269 |
| Eco47I | GGWCC | 2 cut(s) | 41, 60 |
| Eco81I | CCTNAGG | 1 cut(s) | 47 |
| Eco88I | CYCGRG | 1 cut(s) | 543 |
| EcoO109I | RGGNCCY | 1 cut(s) | 41 |
| EcoRII | CCWGG | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 733 |
| EcoT38I | GRGCYC | 1 cut(s) | 269 |
| ErhI | CCWWGG | 1 cut(s) | 733 |
| FaeI | CATG | 7 cut(s) | 77, 125, 186, 224, 373, 445, 671 |
| FaqI | GGGAC | 3 cut(s) | 317, 522, 1030 |
| FatI | CATG | 7 cut(s) | 73, 121, 182, 220, 369, 441, 667 |
| FauI | CCCGC | 1 cut(s) | 703 |
| FblI | GTMKAC | 1 cut(s) | 550 |
| Fnu4HI | GCNGC | 3 cut(s) | 297, 645, 783 |
| FokI | GGATG | 3 cut(s) | 188, 758, 998 |
| FriOI | GRGCYC | 1 cut(s) | 269 |
| Fsp4HI | GCNGC | 3 cut(s) | 297, 645, 783 |
| FspBI | CTAG | 3 cut(s) | 459, 654, 930 |
| GluI | GCNGC | 3 cut(s) | 297, 645, 783 |
| GsaI | CCCAGC | 1 cut(s) | 303 |
| HaeIII | GGCC | 4 cut(s) | 267, 374, 517, 658 |
| HgaI | GACGC | 3 cut(s) | 3, 15, 101 |
| Hin1I | GRCGYC | 2 cut(s) | 26, 112 |
| Hin1II | CATG | 7 cut(s) | 77, 125, 186, 224, 373, 445, 671 |
| HindIII | AAGCTT | 1 cut(s) | 214 |
| HinfI | GANTC | 2 cut(s) | 209, 764 |
| HphI | GGTGA | 1 cut(s) | 722 |
| Hpy166II | GTNNAC | 5 cut(s) | 201, 390, 456, 551, 586 |
| Hpy188I | TCNGA | 6 cut(s) | 31, 492, 620, 745, 777, 814 |
| Hpy188III | TCNNGA | 4 cut(s) | 173, 478, 790, 983 |
| Hpy8I | GTNNAC | 5 cut(s) | 201, 390, 456, 551, 586 |
| Hpy99I | CGWCG | 2 cut(s) | 25, 31 |
| HpyAV | CCTTC | 2 cut(s) | 158, 782 |
| HpyCH4III | ACNGT | 3 cut(s) | 450, 590, 890 |
| HpyCH4IV | ACGT | 3 cut(s) | 81, 157, 327 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 118, 650, 664, 677, 707, 926 |
| HpyF3I | CTNAG | 4 cut(s) | 47, 676, 696, 811 |
| HpySE526I | ACGT | 3 cut(s) | 81, 157, 327 |
| Hsp92I | GRCGYC | 2 cut(s) | 26, 112 |
| Hsp92II | CATG | 7 cut(s) | 77, 125, 186, 224, 373, 445, 671 |
| LmnI | GCTCC | 3 cut(s) | 4, 31, 572 |
| Lsp1109I | GCAGC | 2 cut(s) | 308, 769 |
| LweI | GCATC | 1 cut(s) | 229 |
| MabI | ACCWGGT | 1 cut(s) | 137 |
| MaeI | CTAG | 3 cut(s) | 459, 654, 930 |
| MaeII | ACGT | 3 cut(s) | 81, 157, 327 |
| MbiI | CCGCTC | 1 cut(s) | 710 |
| MboII | GAAGA | 7 cut(s) | 322, 355, 358, 482, 523, 707, 809 |
| MhlI | GDGCHC | 2 cut(s) | 269, 635 |
| MluCI | AATT | 6 cut(s) | 93, 275, 313, 558, 805, 873 |
| MlyI | GAGTC | 2 cut(s) | 218, 758 |
| MmeI | TCCRAC | 4 cut(s) | 9, 454, 577, 723 |
| MseI | TTAA | 7 cut(s) | 96, 228, 521, 555, 561, 684, 1070 |
| MspA1I | CMGCKG | 1 cut(s) | 299 |
| MspR9I | CCNGG | 1 cut(s) | 139 |
| MvaI | CCWGG | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 118, 650, 664, 677, 707, 926 |
| NheI | GCTAGC | 1 cut(s) | 929 |
| NlaIII | CATG | 7 cut(s) | 77, 125, 186, 224, 373, 445, 671 |
| NlaIV | GGNNCC | 2 cut(s) | 43, 267 |
| NspI | RCATGY | 4 cut(s) | 77, 186, 224, 671 |
| PaeI | GCATGC | 2 cut(s) | 77, 671 |
| PaqCI | CACCTGC | 1 cut(s) | 979 |
| PceI | AGGCCT | 1 cut(s) | 658 |
| PflFI | GACNNNGTC | 1 cut(s) | 13 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 69 |
| PkrI | GCNGC | 3 cut(s) | 298, 646, 784 |
| PleI | GAGTC | 2 cut(s) | 217, 758 |
| PpsI | GAGTC | 2 cut(s) | 217, 758 |
| PpuMI | RGGWCCY | 1 cut(s) | 41 |
| PshBI | ATTAAT | 3 cut(s) | 561, 684, 1070 |
| Psp1406I | AACGTT | 1 cut(s) | 81 |
| Psp5II | RGGWCCY | 1 cut(s) | 41 |
| Psp6I | CCWGG | 1 cut(s) | 137 |
| PspFI | CCCAGC | 1 cut(s) | 299 |
| PspGI | CCWGG | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 2 cut(s) | 43, 267 |
| PspOMI | GGGCCC | 1 cut(s) | 265 |
| PspPI | GGNCC | 5 cut(s) | 41, 60, 265, 266, 373 |
| PspPPI | RGGWCCY | 1 cut(s) | 41 |
| PsyI | GACNNNGTC | 1 cut(s) | 13 |
| PvuII | CAGCTG | 1 cut(s) | 299 |
| RsaI | GTAC | 1 cut(s) | 457 |
| RsaNI | GTAC | 1 cut(s) | 456 |
| SaqAI | TTAA | 7 cut(s) | 96, 228, 521, 555, 561, 684, 1070 |
| SatI | GCNGC | 3 cut(s) | 297, 645, 783 |
| Sau96I | GGNCC | 5 cut(s) | 41, 60, 265, 266, 373 |
| SchI | GAGTC | 2 cut(s) | 218, 758 |
| ScrFI | CCNGG | 1 cut(s) | 139 |
| SduI | GDGCHC | 2 cut(s) | 269, 635 |
| SexAI | ACCWGGT | 1 cut(s) | 137 |
| SfaNI | GCATC | 1 cut(s) | 229 |
| SinI | GGWCC | 2 cut(s) | 41, 60 |
| SmlI | CTYRAG | 1 cut(s) | 788 |
| SmoI | CTYRAG | 1 cut(s) | 788 |
| SphI | GCATGC | 2 cut(s) | 77, 671 |
| Sse9I | AATT | 6 cut(s) | 93, 275, 313, 558, 805, 873 |
| SseBI | AGGCCT | 1 cut(s) | 658 |
| SsiI | CCGC | 2 cut(s) | 645, 710 |
| SspI | AATATT | 2 cut(s) | 565, 1068 |
| SspMI | CTAG | 3 cut(s) | 459, 654, 930 |
| StuI | AGGCCT | 1 cut(s) | 658 |
| StyD4I | CCNGG | 1 cut(s) | 137 |
| StyI | CCWWGG | 1 cut(s) | 733 |
| TaaI | ACNGT | 3 cut(s) | 450, 590, 890 |
| TaiI | ACGT | 3 cut(s) | 84, 160, 330 |
| TaqI | TCGA | 1 cut(s) | 877 |
| TasI | AATT | 6 cut(s) | 93, 275, 313, 558, 805, 873 |
| TatI | WGTACW | 1 cut(s) | 455 |
| TauI | GCSGC | 1 cut(s) | 647 |
| Tru1I | TTAA | 7 cut(s) | 96, 228, 521, 555, 561, 684, 1070 |
| Tru9I | TTAA | 7 cut(s) | 96, 228, 521, 555, 561, 684, 1070 |
| TscAI | CASTG | 4 cut(s) | 276, 455, 539, 595 |
| TseI | GCWGC | 2 cut(s) | 296, 782 |
| TspDTI | ATGAA | 1 cut(s) | 358 |
| TspGWI | ACGGA | 1 cut(s) | 585 |
| TspRI | CASTG | 4 cut(s) | 276, 455, 539, 595 |
| Tth111I | GACNNNGTC | 1 cut(s) | 13 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 69 |
| VpaK11BI | GGWCC | 2 cut(s) | 41, 60 |
| VspI | ATTAAT | 3 cut(s) | 561, 684, 1070 |
| XapI | RAATTY | 1 cut(s) | 873 |
| XceI | RCATGY | 4 cut(s) | 77, 186, 224, 671 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 525 |
| XmiI | GTMKAC | 1 cut(s) | 550 |
| XspI | CTAG | 3 cut(s) | 459, 654, 930 |