Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 562 |
| AccB1I | GGYRCC | 1 cut(s) | 562 |
| AcsI | RAATTY | 2 cut(s) | 290, 760 |
| AfaI | GTAC | 2 cut(s) | 564, 701 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AjnI | CCWGG | 1 cut(s) | 815 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 613, 645 |
| AluBI | AGCT | 5 cut(s) | 121, 139, 367, 466, 520 |
| AluI | AGCT | 5 cut(s) | 121, 139, 367, 466, 520 |
| Alw26I | GTCTC | 2 cut(s) | 27, 594 |
| ApeKI | GCWGC | 1 cut(s) | 90 |
| ApoI | RAATTY | 2 cut(s) | 290, 760 |
| Asp718I | GGTACC | 1 cut(s) | 562 |
| AsuHPI | GGTGA | 1 cut(s) | 572 |
| BanI | GGYRCC | 1 cut(s) | 562 |
| BbsI | GAAGAC | 2 cut(s) | 687, 813 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BccI | CCATC | 3 cut(s) | 567, 797, 871 |
| BciT130I | CCWGG | 1 cut(s) | 817 |
| BcoDI | GTCTC | 2 cut(s) | 27, 594 |
| BfaI | CTAG | 3 cut(s) | 260, 467, 626 |
| BglII | AGATCT | 1 cut(s) | 37 |
| BisI | GCNGC | 1 cut(s) | 91 |
| BlsI | GCNGC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 1 cut(s) | 817 |
| BmiI | GGNNCC | 1 cut(s) | 564 |
| BmrFI | CCNGG | 1 cut(s) | 817 |
| BmsI | GCATC | 1 cut(s) | 586 |
| BpiI | GAAGAC | 2 cut(s) | 687, 813 |
| BpuEI | CTTGAG | 2 cut(s) | 161, 857 |
| BsaBI | GATNNNNATC | 1 cut(s) | 645 |
| BsaI | GGTCTC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 1 cut(s) | 330 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 92, 122 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| Bse3DI | GCAATG | 1 cut(s) | 497 |
| Bse8I | GATNNNNATC | 1 cut(s) | 645 |
| BseBI | CCWGG | 1 cut(s) | 817 |
| BseDI | CCNNGG | 1 cut(s) | 330 |
| BseGI | GGATG | 3 cut(s) | 158, 207, 578 |
| BseJI | GATNNNNATC | 1 cut(s) | 645 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseMI | GCAATG | 1 cut(s) | 497 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseRI | GAGGAG | 2 cut(s) | 377, 404 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| BshNI | GGYRCC | 1 cut(s) | 562 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsmAI | GTCTC | 2 cut(s) | 27, 594 |
| Bso31I | GGTCTC | 1 cut(s) | 27 |
| Bsp143I | GATC | 2 cut(s) | 37, 646 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspHI | TCATGA | 1 cut(s) | 196 |
| BspLI | GGNNCC | 1 cut(s) | 564 |
| BspQI | GCTCTTC | 1 cut(s) | 456 |
| BspT107I | GGYRCC | 1 cut(s) | 562 |
| BspTNI | GGTCTC | 1 cut(s) | 27 |
| BsrDI | GCAATG | 1 cut(s) | 497 |
| BssECI | CCNNGG | 1 cut(s) | 330 |
| BssMI | GATC | 2 cut(s) | 37, 646 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst2UI | CCWGG | 1 cut(s) | 817 |
| Bst6I | CTCTTC | 4 cut(s) | 426, 456, 597, 780 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstEII | GGTNACC | 1 cut(s) | 108 |
| BstF5I | GGATG | 3 cut(s) | 158, 207, 578 |
| BstKTI | GATC | 2 cut(s) | 40, 649 |
| BstMAI | GTCTC | 2 cut(s) | 27, 594 |
| BstMBI | GATC | 2 cut(s) | 37, 646 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 499 |
| BstNI | CCWGG | 1 cut(s) | 817 |
| BstPI | GGTNACC | 1 cut(s) | 108 |
| BstSCI | CCNGG | 1 cut(s) | 815 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BstV2I | GAAGAC | 2 cut(s) | 687, 813 |
| BstX2I | RGATCY | 1 cut(s) | 37 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 573 |
| BstYI | RGATCY | 1 cut(s) | 37 |
| BtsCI | GGATG | 3 cut(s) | 158, 207, 578 |
| BtsIMutI | CAGTG | 1 cut(s) | 722 |
| CciI | TCATGA | 1 cut(s) | 196 |
| Csp6I | GTAC | 2 cut(s) | 563, 700 |
| CviAII | CATG | 2 cut(s) | 197, 372 |
| CviJI | RGCY | 7 cut(s) | 121, 139, 324, 357, 367, 466, 520 |
| CviKI_1 | RGCY | 7 cut(s) | 121, 139, 324, 357, 367, 466, 520 |
| CviQI | GTAC | 2 cut(s) | 563, 700 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 2 cut(s) | 39, 648 |
| DpnII | GATC | 2 cut(s) | 37, 646 |
| DraI | TTTAAA | 1 cut(s) | 295 |
| Eam1104I | CTCTTC | 4 cut(s) | 426, 456, 597, 780 |
| EarI | CTCTTC | 4 cut(s) | 426, 456, 597, 780 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco31I | GGTCTC | 1 cut(s) | 27 |
| Eco91I | GGTNACC | 1 cut(s) | 108 |
| EcoO65I | GGTNACC | 1 cut(s) | 108 |
| EcoRII | CCWGG | 1 cut(s) | 815 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| EcoT22I | ATGCAT | 1 cut(s) | 608 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 2 cut(s) | 200, 375 |
| FatI | CATG | 2 cut(s) | 196, 371 |
| Fnu4HI | GCNGC | 1 cut(s) | 91 |
| FokI | GGATG | 3 cut(s) | 165, 194, 585 |
| Fsp4HI | GCNGC | 1 cut(s) | 91 |
| FspBI | CTAG | 3 cut(s) | 260, 467, 626 |
| GluI | GCNGC | 1 cut(s) | 91 |
| Hin1II | CATG | 2 cut(s) | 200, 375 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HindIII | AAGCTT | 3 cut(s) | 119, 137, 518 |
| HinfI | GANTC | 7 cut(s) | 125, 200, 254, 263, 718, 727, 904 |
| HpaI | GTTAAC | 1 cut(s) | 445 |
| HphI | GGTGA | 1 cut(s) | 572 |
| Hpy166II | GTNNAC | 2 cut(s) | 247, 445 |
| Hpy188I | TCNGA | 5 cut(s) | 205, 212, 289, 384, 750 |
| Hpy188III | TCNNGA | 4 cut(s) | 197, 556, 596, 836 |
| Hpy8I | GTNNAC | 2 cut(s) | 247, 445 |
| HpyAV | CCTTC | 4 cut(s) | 277, 478, 553, 563 |
| HpyCH4V | TGCA | 7 cut(s) | 93, 219, 232, 502, 606, 687, 707 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 499 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| Hsp92II | CATG | 2 cut(s) | 200, 375 |
| KpnI | GGTACC | 1 cut(s) | 566 |
| KspAI | GTTAAC | 1 cut(s) | 445 |
| Kzo9I | GATC | 2 cut(s) | 37, 646 |
| LguI | GCTCTTC | 1 cut(s) | 456 |
| LmnI | GCTCC | 1 cut(s) | 364 |
| LpnPI | CCDG | 9 cut(s) | 26, 126, 425, 579, 596, 651, 728, 802, 829 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| LweI | GCATC | 1 cut(s) | 586 |
| MaeI | CTAG | 3 cut(s) | 260, 467, 626 |
| MaeIII | GTNAC | 1 cut(s) | 108 |
| MalI | GATC | 2 cut(s) | 39, 648 |
| MboI | GATC | 2 cut(s) | 37, 646 |
| MboII | GAAGA | 9 cut(s) | 413, 473, 584, 692, 797, 801, 804, 813, 816 |
| MflI | RGATCY | 1 cut(s) | 37 |
| MluCI | AATT | 9 cut(s) | 7, 45, 85, 95, 272, 290, 533, 760, 893 |
| MlyI | GAGTC | 2 cut(s) | 272, 898 |
| MnlI | CCTC | 9 cut(s) | 74, 94, 151, 301, 339, 355, 382, 385, 781 |
| Mph1103I | ATGCAT | 1 cut(s) | 608 |
| MseI | TTAA | 6 cut(s) | 294, 336, 444, 536, 663, 909 |
| MslI | CAYNNNNRTG | 1 cut(s) | 886 |
| MspR9I | CCNGG | 1 cut(s) | 817 |
| MvaI | CCWGG | 1 cut(s) | 817 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 499 |
| NdeII | GATC | 2 cut(s) | 37, 646 |
| NlaIII | CATG | 2 cut(s) | 200, 375 |
| NlaIV | GGNNCC | 1 cut(s) | 564 |
| NsiI | ATGCAT | 1 cut(s) | 608 |
| PagI | TCATGA | 1 cut(s) | 196 |
| PciSI | GCTCTTC | 1 cut(s) | 456 |
| PfeI | GAWTC | 5 cut(s) | 125, 200, 254, 718, 727 |
| PkrI | GCNGC | 1 cut(s) | 92 |
| PleI | GAGTC | 2 cut(s) | 271, 898 |
| PpsI | GAGTC | 2 cut(s) | 271, 898 |
| Psp6I | CCWGG | 1 cut(s) | 815 |
| PspEI | GGTNACC | 1 cut(s) | 108 |
| PspGI | CCWGG | 1 cut(s) | 815 |
| PspN4I | GGNNCC | 1 cut(s) | 564 |
| PsuI | RGATCY | 1 cut(s) | 37 |
| RsaI | GTAC | 2 cut(s) | 564, 701 |
| RsaNI | GTAC | 2 cut(s) | 563, 700 |
| RseI | CAYNNNNRTG | 1 cut(s) | 886 |
| SapI | GCTCTTC | 1 cut(s) | 456 |
| SaqAI | TTAA | 6 cut(s) | 294, 336, 444, 536, 663, 909 |
| SatI | GCNGC | 1 cut(s) | 91 |
| Sau3AI | GATC | 2 cut(s) | 37, 646 |
| SchI | GAGTC | 2 cut(s) | 272, 898 |
| ScrFI | CCNGG | 1 cut(s) | 817 |
| SfaNI | GCATC | 1 cut(s) | 586 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 886 |
| SmlI | CTYRAG | 2 cut(s) | 140, 836 |
| SmoI | CTYRAG | 2 cut(s) | 140, 836 |
| Sse9I | AATT | 9 cut(s) | 7, 45, 85, 95, 272, 290, 533, 760, 893 |
| SspI | AATATT | 1 cut(s) | 527 |
| SspMI | CTAG | 3 cut(s) | 260, 467, 626 |
| StyD4I | CCNGG | 1 cut(s) | 815 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaqI | TCGA | 2 cut(s) | 438, 557 |
| TasI | AATT | 9 cut(s) | 7, 45, 85, 95, 272, 290, 533, 760, 893 |
| TatI | WGTACW | 1 cut(s) | 699 |
| TfiI | GAWTC | 5 cut(s) | 125, 200, 254, 718, 727 |
| Tru1I | TTAA | 6 cut(s) | 294, 336, 444, 536, 663, 909 |
| Tru9I | TTAA | 6 cut(s) | 294, 336, 444, 536, 663, 909 |
| TscAI | CASTG | 1 cut(s) | 729 |
| TseI | GCWGC | 1 cut(s) | 90 |
| TspDTI | ATGAA | 4 cut(s) | 185, 213, 413, 798 |
| TspRI | CASTG | 1 cut(s) | 729 |
| XapI | RAATTY | 2 cut(s) | 290, 760 |
| XspI | CTAG | 3 cut(s) | 260, 467, 626 |
| Zsp2I | ATGCAT | 1 cut(s) | 608 |