ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2996 |
| Acc36I | ACCTGC | 2 cut(s) | 638, 2996 |
| Acc65I | GGTACC | 1 cut(s) | 3111 |
| AccB1I | GGYRCC | 1 cut(s) | 3111 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 365 |
| AccI | GTMKAC | 1 cut(s) | 928 |
| AccII | CGCG | 1 cut(s) | 2731 |
| AciI | CCGC | 7 cut(s) | 122, 673, 1829, 2417, 2441, 2729, 3103 |
| AclWI | GGATC | 6 cut(s) | 314, 677, 1110, 2050, 2861, 2948 |
| AcsI | RAATTY | 4 cut(s) | 453, 1115, 1475, 2370 |
| AcvI | CACGTG | 1 cut(s) | 887 |
| AdeI | CACNNNGTG | 1 cut(s) | 2518 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 365, 1000, 1932, 1933, 1949, 1960, 2778, 3060, 3087 |
| AflIII | ACRYGT | 2 cut(s) | 800, 884 |
| AjiI | CACGTC | 1 cut(s) | 693 |
| AjnI | CCWGG | 4 cut(s) | 41, 1681, 2576, 2870 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 509, 541, 2551, 2583 |
| AleI | CACNNNNGTG | 1 cut(s) | 1199 |
| AluBI | AGCT | 9 cut(s) | 944, 1441, 2183, 2348, 2475, 2525, 2707, 2755, 3152 |
| AluI | AGCT | 9 cut(s) | 944, 1441, 2183, 2348, 2475, 2525, 2707, 2755, 3152 |
| Alw21I | GWGCWC | 2 cut(s) | 1443, 2077 |
| Alw26I | GTCTC | 5 cut(s) | 270, 841, 987, 1060, 1489 |
| AlwI | GGATC | 6 cut(s) | 314, 677, 1110, 2050, 2861, 2948 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 53 |
| Ama87I | CYCGRG | 3 cut(s) | 1393, 1926, 2795 |
| AoxI | GGCC | 5 cut(s) | 562, 990, 1713, 1951, 3051 |
| ApaI | GGGCCC | 2 cut(s) | 566, 3055 |
| ApeKI | GCWGC | 2 cut(s) | 890, 1361 |
| ApoI | RAATTY | 4 cut(s) | 453, 1115, 1475, 2370 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 539, 571 |
| AseI | ATTAAT | 1 cut(s) | 1914 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2370 |
| Asp718I | GGTACC | 1 cut(s) | 3111 |
| AspA2I | CCTAGG | 1 cut(s) | 566 |
| AspLEI | GCGC | 1 cut(s) | 1743 |
| AsuC2I | CCSGG | 5 cut(s) | 1262, 1394, 1395, 1927, 1928 |
| AsuHPI | GGTGA | 7 cut(s) | 329, 1843, 2209, 2552, 2849, 2898, 3020 |
| AvaI | CYCGRG | 3 cut(s) | 1393, 1926, 2795 |
| AvaII | GGWCC | 7 cut(s) | 610, 670, 697, 848, 1191, 1397, 2875 |
| AvrII | CCTAGG | 1 cut(s) | 566 |
| AxyI | CCTNAGG | 1 cut(s) | 1536 |
| BaeGI | GKGCMC | 2 cut(s) | 566, 3055 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 246, 279 |
| BanI | GGYRCC | 1 cut(s) | 3111 |
| BanII | GRGCYC | 5 cut(s) | 566, 1327, 1443, 2316, 3055 |
| BauI | CACGAG | 2 cut(s) | 1442, 1947 |
| BbrPI | CACGTG | 1 cut(s) | 887 |
| Bbv12I | GWGCWC | 2 cut(s) | 1443, 2077 |
| BbvI | GCAGC | 2 cut(s) | 877, 1348 |
| BccI | CCATC | 8 cut(s) | 469, 1091, 1131, 1175, 1837, 2834, 3016, 3136 |
| BceAI | ACGGC | 4 cut(s) | 1420, 1728, 2430, 3018 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2091, 2125 |
| BciT130I | CCWGG | 4 cut(s) | 43, 1683, 2578, 2872 |
| BciVI | GTATCC | 1 cut(s) | 1857 |
| BclI | TGATCA | 1 cut(s) | 2280 |
| BcnI | CCSGG | 5 cut(s) | 1262, 1394, 1395, 1927, 1928 |
| BcoDI | GTCTC | 5 cut(s) | 270, 841, 987, 1060, 1489 |
| BfaI | CTAG | 6 cut(s) | 152, 567, 666, 1283, 2079, 2975 |
| BfoI | RGCGCY | 1 cut(s) | 1744 |
| BfuAI | ACCTGC | 2 cut(s) | 638, 2996 |
| BfuI | GTATCC | 1 cut(s) | 1857 |
| BisI | GCNGC | 2 cut(s) | 891, 1362 |
| BlnI | CCTAGG | 1 cut(s) | 566 |
| BlpI | GCTNAGC | 2 cut(s) | 2703, 2751 |
| BlsI | GCNGC | 2 cut(s) | 892, 1363 |
| BmcAI | AGTACT | 1 cut(s) | 2306 |
| Bme1390I | CCNGG | 9 cut(s) | 43, 1262, 1394, 1395, 1683, 1927, 1928, 2578, 2872 |
| Bme18I | GGWCC | 7 cut(s) | 610, 670, 697, 848, 1191, 1397, 2875 |
| BmeT110I | CYCGRG | 3 cut(s) | 1393, 1926, 2795 |
| BmgBI | CACGTC | 1 cut(s) | 693 |
| BmrFI | CCNGG | 9 cut(s) | 43, 1262, 1394, 1395, 1683, 1927, 1928, 2578, 2872 |
| BmrI | ACTGGG | 3 cut(s) | 81, 1546, 2873 |
| BmsI | GCATC | 6 cut(s) | 671, 735, 1387, 2238, 2499, 2542 |
| BmuI | ACTGGG | 3 cut(s) | 81, 1546, 2873 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 821, 853 |
| BpmI | CTGGAG | 1 cut(s) | 2945 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2448 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2703, 2751 |
| BpuMI | CCSGG | 5 cut(s) | 1262, 1394, 1395, 1927, 1928 |
| BsaAI | YACGTR | 4 cut(s) | 384, 887, 1518, 3047 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1101 |
| BsaWI | WCCGGW | 2 cut(s) | 612, 2686 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1057, 1087, 2573, 2603 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 365, 1000, 1932, 1933, 1949, 1960, 2778, 3060, 3087 |
| Bse1I | ACTGG | 6 cut(s) | 87, 346, 1168, 1552, 2879, 2909 |
| Bse21I | CCTNAGG | 1 cut(s) | 1536 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1101 |
| BseBI | CCWGG | 4 cut(s) | 43, 1683, 2578, 2872 |
| BseJI | GATNNNNATC | 1 cut(s) | 1101 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 365, 1000, 1932, 1933, 1949, 1960, 2778, 3060, 3087 |
| BseMII | CTCAG | 8 cut(s) | 479, 1490, 1992, 2399, 2422, 2462, 2540, 2742 |
| BseNI | ACTGG | 6 cut(s) | 87, 346, 1168, 1552, 2879, 2909 |
| BseRI | GAGGAG | 7 cut(s) | 326, 505, 606, 614, 791, 1016, 1871 |
| BseSI | GKGCMC | 2 cut(s) | 566, 3055 |
| BseXI | GCAGC | 2 cut(s) | 877, 1348 |
| BseYI | CCCAGC | 1 cut(s) | 365 |
| Bsh1236I | CGCG | 1 cut(s) | 2731 |
| BshFI | GGCC | 5 cut(s) | 564, 992, 1715, 1953, 3053 |
| BshNI | GGYRCC | 1 cut(s) | 3111 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1443, 2077 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1393, 1926, 2795 |
| BsiSI | CCGG | 5 cut(s) | 613, 1262, 1394, 1927, 2687 |
| BsiWI | CGTACG | 1 cut(s) | 380 |
| BslFI | GGGAC | 4 cut(s) | 1375, 1664, 1979, 2861 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 365, 1000, 1932, 1933, 1949, 1960, 2778, 3060, 3087 |
| BsmAI | GTCTC | 5 cut(s) | 270, 841, 987, 1060, 1489 |
| BsmBI | CGTCTC | 1 cut(s) | 987 |
| BsmFI | GGGAC | 4 cut(s) | 1375, 1664, 1979, 2861 |
| BsmI | GAATGC | 2 cut(s) | 879, 2032 |
| BsnI | GGCC | 5 cut(s) | 564, 992, 1715, 1953, 3053 |
| BsoBI | CYCGRG | 3 cut(s) | 1393, 1926, 2795 |
| Bsp120I | GGGCCC | 2 cut(s) | 562, 3051 |
| Bsp1286I | GDGCHC | 6 cut(s) | 566, 1327, 1443, 2077, 2316, 3055 |
| Bsp1407I | TGTACA | 1 cut(s) | 116 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2703, 2751 |
| BspACI | CCGC | 7 cut(s) | 122, 673, 1829, 2417, 2441, 2729, 3103 |
| BspANI | GGCC | 5 cut(s) | 564, 992, 1715, 1953, 3053 |
| BspCNI | CTCAG | 8 cut(s) | 480, 1491, 1993, 2398, 2421, 2461, 2539, 2743 |
| BspFNI | CGCG | 1 cut(s) | 2731 |
| BspMI | ACCTGC | 2 cut(s) | 638, 2996 |
| BspPI | GGATC | 6 cut(s) | 314, 677, 1110, 2050, 2861, 2948 |
| BspQI | GCTCTTC | 1 cut(s) | 1023 |
| BspT107I | GGYRCC | 1 cut(s) | 3111 |
| BsrGI | TGTACA | 1 cut(s) | 116 |
| BsrI | ACTGG | 6 cut(s) | 87, 346, 1168, 1552, 2879, 2909 |
| BssNAI | GTATAC | 1 cut(s) | 929 |
| BssSI | CACGAG | 2 cut(s) | 1442, 1947 |
| BssT1I | CCWWGG | 4 cut(s) | 425, 566, 641, 3129 |
| Bst1107I | GTATAC | 1 cut(s) | 929 |
| Bst2BI | CACGAG | 2 cut(s) | 1442, 1947 |
| Bst2UI | CCWGG | 4 cut(s) | 43, 1683, 2578, 2872 |
| Bst4CI | ACNGT | 6 cut(s) | 23, 49, 555, 1869, 1894, 2516 |
| Bst6I | CTCTTC | 3 cut(s) | 755, 908, 1023 |
| BstAUI | TGTACA | 1 cut(s) | 116 |
| BstBAI | YACGTR | 4 cut(s) | 384, 887, 1518, 3047 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 2169 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1947, 1958 |
| BstFNI | CGCG | 1 cut(s) | 2731 |
| BstH2I | RGCGCY | 1 cut(s) | 1744 |
| BstHHI | GCGC | 1 cut(s) | 1743 |
| BstMAI | GTCTC | 5 cut(s) | 270, 841, 987, 1060, 1489 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2668, 3125 |
| BstNI | CCWGG | 4 cut(s) | 43, 1683, 2578, 2872 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSCI | CCNGG | 9 cut(s) | 41, 1260, 1392, 1393, 1681, 1925, 1926, 2576, 2870 |
| BstSLI | GKGCMC | 2 cut(s) | 566, 3055 |
| BstSNI | TACGTA | 1 cut(s) | 1518 |
| BstUI | CGCG | 1 cut(s) | 2731 |
| BstV1I | GCAGC | 2 cut(s) | 877, 1348 |
| BstX2I | RGATCY | 1 cut(s) | 1102 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1201 |
| BstYI | RGATCY | 1 cut(s) | 1102 |
| BstZ17I | GTATAC | 1 cut(s) | 929 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1536 |
| BsuI | GTATCC | 1 cut(s) | 1857 |
| BsuRI | GGCC | 5 cut(s) | 564, 992, 1715, 1953, 3053 |
| BtrI | CACGTC | 1 cut(s) | 693 |
| BtsI | GCAGTG | 2 cut(s) | 1473, 3112 |
| BtsIMutI | CAGTG | 5 cut(s) | 54, 94, 1473, 2886, 3112 |
| BveI | ACCTGC | 2 cut(s) | 638, 2996 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 2169 |
| CaiI | CAGNNNCTG | 1 cut(s) | 53 |
| CfoI | GCGC | 1 cut(s) | 1743 |
| Cfr9I | CCCGGG | 2 cut(s) | 1393, 1926 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 845, 880 |
| DraI | TTTAAA | 2 cut(s) | 1632, 2361 |
| DraIII | CACNNNGTG | 1 cut(s) | 2518 |
| Eam1104I | CTCTTC | 3 cut(s) | 755, 908, 1023 |
| EarI | CTCTTC | 3 cut(s) | 755, 908, 1023 |
| EciI | GGCGGA | 1 cut(s) | 662 |
| Ecl136II | GAGCTC | 1 cut(s) | 1441 |
| Eco105I | TACGTA | 1 cut(s) | 1518 |
| Eco130I | CCWWGG | 4 cut(s) | 425, 566, 641, 3129 |
| Eco147I | AGGCCT | 1 cut(s) | 1953 |
| Eco24I | GRGCYC | 5 cut(s) | 566, 1327, 1443, 2316, 3055 |
| Eco47I | GGWCC | 7 cut(s) | 610, 670, 697, 848, 1191, 1397, 2875 |
| Eco53kI | GAGCTC | 1 cut(s) | 1441 |
| Eco72I | CACGTG | 1 cut(s) | 887 |
| Eco81I | CCTNAGG | 1 cut(s) | 1536 |
| Eco88I | CYCGRG | 3 cut(s) | 1393, 1926, 2795 |
| EcoICRI | GAGCTC | 1 cut(s) | 1441 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1947, 1958 |
| EcoO109I | RGGNCCY | 3 cut(s) | 563, 2875, 3051 |
| EcoRII | CCWGG | 4 cut(s) | 41, 1681, 2576, 2870 |
| EcoT14I | CCWWGG | 4 cut(s) | 425, 566, 641, 3129 |
| EcoT22I | ATGCAT | 3 cut(s) | 414, 1380, 2634 |
| EcoT38I | GRGCYC | 5 cut(s) | 566, 1327, 1443, 2316, 3055 |
| ErhI | CCWWGG | 4 cut(s) | 425, 566, 641, 3129 |
| Esp3I | CGTCTC | 1 cut(s) | 987 |
| FaqI | GGGAC | 4 cut(s) | 1375, 1664, 1979, 2861 |
| FauI | CCCGC | 1 cut(s) | 2410 |
| FauNDI | CATATG | 1 cut(s) | 1798 |
| FbaI | TGATCA | 1 cut(s) | 2280 |
| FblI | GTMKAC | 1 cut(s) | 928 |
| Fnu4HI | GCNGC | 2 cut(s) | 891, 1362 |
| FriOI | GRGCYC | 5 cut(s) | 566, 1327, 1443, 2316, 3055 |
| Fsp4HI | GCNGC | 2 cut(s) | 891, 1362 |
| FspBI | CTAG | 6 cut(s) | 152, 567, 666, 1283, 2079, 2975 |
| GlaI | GCGC | 1 cut(s) | 1742 |
| GluI | GCNGC | 2 cut(s) | 891, 1362 |
| GsaI | CCCAGC | 1 cut(s) | 369 |
| GsuI | CTGGAG | 1 cut(s) | 2945 |
| HaeII | RGCGCY | 1 cut(s) | 1744 |
| HaeIII | GGCC | 5 cut(s) | 564, 992, 1715, 1953, 3053 |
| HapII | CCGG | 5 cut(s) | 613, 1262, 1394, 1927, 2687 |
| HhaI | GCGC | 1 cut(s) | 1743 |
| Hin6I | GCGC | 1 cut(s) | 1741 |
| HinP1I | GCGC | 1 cut(s) | 1741 |
| HincII | GTYRAC | 1 cut(s) | 2192 |
| HindII | GTYRAC | 1 cut(s) | 2192 |
| HindIII | AAGCTT | 2 cut(s) | 2346, 2705 |
| HpaII | CCGG | 5 cut(s) | 613, 1262, 1394, 1927, 2687 |
| HphI | GGTGA | 7 cut(s) | 329, 1843, 2209, 2552, 2849, 2898, 3020 |
| Hpy99I | CGWCG | 2 cut(s) | 254, 697 |
| HpyCH4III | ACNGT | 6 cut(s) | 23, 49, 555, 1869, 1894, 2516 |
| HpyCH4IV | ACGT | 7 cut(s) | 383, 692, 800, 886, 1072, 1517, 3046 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2668, 3125 |
| HpySE526I | ACGT | 7 cut(s) | 383, 692, 800, 886, 1072, 1517, 3046 |
| HspAI | GCGC | 1 cut(s) | 1741 |
| KflI | GGGWCCC | 1 cut(s) | 2875 |
| KpnI | GGTACC | 1 cut(s) | 3115 |
| Ksp22I | TGATCA | 1 cut(s) | 2280 |
| LguI | GCTCTTC | 1 cut(s) | 1023 |
| LmnI | GCTCC | 4 cut(s) | 370, 1438, 2080, 2319 |
| Lsp1109I | GCAGC | 2 cut(s) | 877, 1348 |
| LweI | GCATC | 6 cut(s) | 671, 735, 1387, 2238, 2499, 2542 |
| MaeI | CTAG | 6 cut(s) | 152, 567, 666, 1283, 2079, 2975 |
| MaeII | ACGT | 7 cut(s) | 383, 692, 800, 886, 1072, 1517, 3046 |
| MaeIII | GTNAC | 5 cut(s) | 1041, 2087, 2157, 2330, 2649 |
| MfeI | CAATTG | 2 cut(s) | 178, 1022 |
| MflI | RGATCY | 1 cut(s) | 1102 |
| MhlI | GDGCHC | 6 cut(s) | 566, 1327, 1443, 2077, 2316, 3055 |
| MlyI | GAGTC | 5 cut(s) | 971, 1140, 1961, 2377, 2777 |
| MmeI | TCCRAC | 8 cut(s) | 415, 522, 675, 771, 875, 978, 2372, 2790 |
| Mph1103I | ATGCAT | 3 cut(s) | 414, 1380, 2634 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2370 |
| MslI | CAYNNNNRTG | 3 cut(s) | 294, 1199, 2855 |
| MspA1I | CMGCKG | 1 cut(s) | 122 |
| MspI | CCGG | 5 cut(s) | 613, 1262, 1394, 1927, 2687 |
| MspR9I | CCNGG | 9 cut(s) | 43, 1262, 1394, 1395, 1683, 1927, 1928, 2578, 2872 |
| MunI | CAATTG | 2 cut(s) | 178, 1022 |
| Mva1269I | GAATGC | 2 cut(s) | 879, 2032 |
| MvaI | CCWGG | 4 cut(s) | 43, 1683, 2578, 2872 |
| MvnI | CGCG | 1 cut(s) | 2731 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2668, 3125 |
| NciI | CCSGG | 5 cut(s) | 1262, 1394, 1395, 1927, 1928 |
| NdeI | CATATG | 1 cut(s) | 1798 |
| NmuCI | GTSAC | 2 cut(s) | 2087, 2157 |
| NsiI | ATGCAT | 3 cut(s) | 414, 1380, 2634 |
| NspI | RCATGY | 1 cut(s) | 167 |
| OliI | CACNNNNGTG | 1 cut(s) | 1199 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PaqCI | CACCTGC | 1 cut(s) | 2996 |
| PasI | CCCWGGG | 1 cut(s) | 2871 |
| PceI | AGGCCT | 1 cut(s) | 1953 |
| PciSI | GCTCTTC | 1 cut(s) | 1023 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 331, 1954 |
| PctI | GAATGC | 2 cut(s) | 879, 2032 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2370 |
| PfeI | GAWTC | 6 cut(s) | 388, 899, 1646, 2108, 2677, 2690 |
| Pfl23II | CGTACG | 1 cut(s) | 380 |
| PflFI | GACNNNGTC | 1 cut(s) | 49 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 365 |
| PkrI | GCNGC | 2 cut(s) | 892, 1363 |
| PleI | GAGTC | 5 cut(s) | 971, 1139, 1961, 2377, 2776 |
| PmaCI | CACGTG | 1 cut(s) | 887 |
| PmlI | CACGTG | 1 cut(s) | 887 |
| PpsI | GAGTC | 5 cut(s) | 971, 1139, 1961, 2377, 2776 |
| Ppu21I | YACGTR | 4 cut(s) | 384, 887, 1518, 3047 |
| PpuMI | RGGWCCY | 1 cut(s) | 2875 |
| PshBI | ATTAAT | 1 cut(s) | 1914 |
| Psp124BI | GAGCTC | 1 cut(s) | 1443 |
| Psp5II | RGGWCCY | 1 cut(s) | 2875 |
| Psp6I | CCWGG | 4 cut(s) | 41, 1681, 2576, 2870 |
| PspCI | CACGTG | 1 cut(s) | 887 |
| PspFI | CCCAGC | 1 cut(s) | 365 |
| PspGI | CCWGG | 4 cut(s) | 41, 1681, 2576, 2870 |
| PspLI | CGTACG | 1 cut(s) | 380 |
| PspOMI | GGGCCC | 2 cut(s) | 562, 3051 |
| PspPPI | RGGWCCY | 1 cut(s) | 2875 |
| PstNI | CAGNNNCTG | 1 cut(s) | 53 |
| PsuI | RGATCY | 1 cut(s) | 1102 |
| PsyI | GACNNNGTC | 1 cut(s) | 49 |
| RseI | CAYNNNNRTG | 3 cut(s) | 294, 1199, 2855 |
| SacI | GAGCTC | 1 cut(s) | 1443 |
| SapI | GCTCTTC | 1 cut(s) | 1023 |
| SatI | GCNGC | 2 cut(s) | 891, 1362 |
| ScaI | AGTACT | 1 cut(s) | 2306 |
| SchI | GAGTC | 5 cut(s) | 971, 1140, 1961, 2377, 2777 |
| ScrFI | CCNGG | 9 cut(s) | 43, 1262, 1394, 1395, 1683, 1927, 1928, 2578, 2872 |
| SduI | GDGCHC | 6 cut(s) | 566, 1327, 1443, 2077, 2316, 3055 |
| SfaNI | GCATC | 6 cut(s) | 671, 735, 1387, 2238, 2499, 2542 |
| SinI | GGWCC | 7 cut(s) | 610, 670, 697, 848, 1191, 1397, 2875 |
| SmaI | CCCGGG | 2 cut(s) | 1395, 1928 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 294, 1199, 2855 |
| SnaBI | TACGTA | 1 cut(s) | 1518 |
| SphI | GCATGC | 1 cut(s) | 167 |
| SseBI | AGGCCT | 1 cut(s) | 1953 |
| SsiI | CCGC | 7 cut(s) | 122, 673, 1829, 2417, 2441, 2729, 3103 |
| SspI | AATATT | 2 cut(s) | 1279, 2723 |
| SspMI | CTAG | 6 cut(s) | 152, 567, 666, 1283, 2079, 2975 |
| SstI | GAGCTC | 1 cut(s) | 1443 |
| StuI | AGGCCT | 1 cut(s) | 1953 |
| StyD4I | CCNGG | 9 cut(s) | 41, 1260, 1392, 1393, 1681, 1925, 1926, 2576, 2870 |
| StyI | CCWWGG | 4 cut(s) | 425, 566, 641, 3129 |
| TaaI | ACNGT | 6 cut(s) | 23, 49, 555, 1869, 1894, 2516 |
| TaiI | ACGT | 7 cut(s) | 386, 695, 803, 889, 1075, 1520, 3049 |
| TaqI | TCGA | 4 cut(s) | 142, 281, 1610, 2557 |
| TatI | WGTACW | 3 cut(s) | 116, 484, 2304 |
| TfiI | GAWTC | 6 cut(s) | 388, 899, 1646, 2108, 2677, 2690 |
| TscAI | CASTG | 5 cut(s) | 54, 94, 1473, 2886, 3112 |
| TseFI | GTSAC | 2 cut(s) | 2087, 2157 |
| TseI | GCWGC | 2 cut(s) | 890, 1361 |
| Tsp45I | GTSAC | 2 cut(s) | 2087, 2157 |
| TspGWI | ACGGA | 3 cut(s) | 946, 1351, 1559 |
| TspMI | CCCGGG | 2 cut(s) | 1393, 1926 |
| TspRI | CASTG | 5 cut(s) | 54, 94, 1473, 2886, 3112 |
| Tth111I | GACNNNGTC | 1 cut(s) | 49 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 365 |
| VpaK11BI | GGWCC | 7 cut(s) | 610, 670, 697, 848, 1191, 1397, 2875 |
| VspI | ATTAAT | 1 cut(s) | 1914 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1947, 1958 |
| XapI | RAATTY | 4 cut(s) | 453, 1115, 1475, 2370 |
| XbaI | TCTAGA | 1 cut(s) | 1282 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaI | CCCGGG | 2 cut(s) | 1393, 1926 |
| XmaJI | CCTAGG | 1 cut(s) | 566 |
| XmiI | GTMKAC | 1 cut(s) | 928 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2370 |
| XspI | CTAG | 6 cut(s) | 152, 567, 666, 1283, 2079, 2975 |
| ZrmI | AGTACT | 1 cut(s) | 2306 |
| Zsp2I | ATGCAT | 3 cut(s) | 414, 1380, 2634 |