Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 218, 393 |
| Acc16I | TGCGCA | 4 cut(s) | 326, 344, 423, 452 |
| Acc36I | ACCTGC | 5 cut(s) | 97, 208, 218, 242, 393 |
| AccI | GTMKAC | 1 cut(s) | 367 |
| AciI | CCGC | 6 cut(s) | 138, 182, 283, 545, 548, 592 |
| AcoI | YGGCCR | 5 cut(s) | 43, 79, 93, 507, 527 |
| AcsI | RAATTY | 1 cut(s) | 496 |
| AfaI | GTAC | 1 cut(s) | 331 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 52, 88, 102, 284, 509, 557 |
| AgsI | TTSAA | 2 cut(s) | 38, 611 |
| AjnI | CCWGG | 1 cut(s) | 514 |
| AleI | CACNNNNGTG | 2 cut(s) | 320, 417 |
| AluBI | AGCT | 2 cut(s) | 101, 177 |
| AluI | AGCT | 2 cut(s) | 101, 177 |
| Alw26I | GTCTC | 2 cut(s) | 226, 260 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 166, 210, 244 |
| AoxI | GGCC | 7 cut(s) | 43, 79, 93, 275, 486, 507, 527 |
| ApeKI | GCWGC | 4 cut(s) | 121, 124, 295, 434 |
| ApoI | RAATTY | 1 cut(s) | 496 |
| AspLEI | GCGC | 4 cut(s) | 327, 345, 424, 453 |
| AspS9I | GGNCC | 3 cut(s) | 275, 486, 512 |
| AsuC2I | CCSGG | 1 cut(s) | 61 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| BanII | GRGCYC | 4 cut(s) | 200, 268, 431, 563 |
| BauI | CACGAG | 1 cut(s) | 199 |
| BbvI | GCAGC | 4 cut(s) | 108, 111, 307, 446 |
| BccI | CCATC | 2 cut(s) | 35, 499 |
| BciT130I | CCWGG | 1 cut(s) | 516 |
| BcnI | CCSGG | 1 cut(s) | 61 |
| BcoDI | GTCTC | 2 cut(s) | 226, 260 |
| BfaI | CTAG | 1 cut(s) | 102 |
| BfmI | CTRYAG | 2 cut(s) | 125, 147 |
| BfuAI | ACCTGC | 5 cut(s) | 97, 208, 218, 242, 393 |
| BglII | AGATCT | 1 cut(s) | 382 |
| BisI | GCNGC | 5 cut(s) | 122, 125, 296, 435, 548 |
| BlsI | GCNGC | 5 cut(s) | 123, 126, 297, 436, 549 |
| BmcAI | AGTACT | 1 cut(s) | 331 |
| Bme1390I | CCNGG | 2 cut(s) | 61, 516 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmgT120I | GGNCC | 3 cut(s) | 275, 486, 512 |
| BmiI | GGNNCC | 6 cut(s) | 9, 276, 487, 534, 543, 562 |
| BmrFI | CCNGG | 2 cut(s) | 61, 516 |
| BmsI | GCATC | 2 cut(s) | 330, 438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 465 |
| BpuMI | CCSGG | 1 cut(s) | 61 |
| BsaI | GGTCTC | 2 cut(s) | 226, 260 |
| BsaJI | CCNNGG | 2 cut(s) | 60, 564 |
| BsaWI | WCCGGW | 3 cut(s) | 10, 23, 535 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 52, 88, 102, 284, 509, 557 |
| Bse118I | RCCGGY | 4 cut(s) | 488, 509, 529, 550 |
| Bse1I | ACTGG | 1 cut(s) | 93 |
| BseBI | CCWGG | 1 cut(s) | 516 |
| BseDI | CCNNGG | 2 cut(s) | 60, 564 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 52, 88, 102, 284, 509, 557 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseNI | ACTGG | 1 cut(s) | 93 |
| BseX3I | CGGCCG | 1 cut(s) | 527 |
| BseXI | GCAGC | 4 cut(s) | 108, 111, 307, 446 |
| BsgI | GTGCAG | 4 cut(s) | 135, 190, 223, 427 |
| Bsh1285I | CGRYCG | 1 cut(s) | 530 |
| BshFI | GGCC | 7 cut(s) | 45, 81, 95, 277, 488, 509, 529 |
| BsiEI | CGRYCG | 1 cut(s) | 530 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 52, 88, 102, 284, 509, 557 |
| BsmAI | GTCTC | 2 cut(s) | 226, 260 |
| BsnI | GGCC | 7 cut(s) | 45, 81, 95, 277, 488, 509, 529 |
| Bso31I | GGTCTC | 2 cut(s) | 226, 260 |
| Bsp1286I | GDGCHC | 4 cut(s) | 200, 268, 431, 563 |
| Bsp143I | GATC | 1 cut(s) | 382 |
| BspACI | CCGC | 6 cut(s) | 138, 182, 283, 545, 548, 592 |
| BspANI | GGCC | 7 cut(s) | 45, 81, 95, 277, 488, 509, 529 |
| BspCNI | CTCAG | 1 cut(s) | 478 |
| BspLI | GGNNCC | 6 cut(s) | 9, 276, 487, 534, 543, 562 |
| BspMAI | CTGCAG | 1 cut(s) | 129 |
| BspMI | ACCTGC | 5 cut(s) | 97, 208, 218, 242, 393 |
| BspTNI | GGTCTC | 2 cut(s) | 226, 260 |
| BsrFI | RCCGGY | 4 cut(s) | 488, 509, 529, 550 |
| BsrI | ACTGG | 1 cut(s) | 93 |
| BssAI | RCCGGY | 4 cut(s) | 488, 509, 529, 550 |
| BssECI | CCNNGG | 2 cut(s) | 60, 564 |
| BssMI | GATC | 1 cut(s) | 382 |
| BssSI | CACGAG | 1 cut(s) | 199 |
| BssT1I | CCWWGG | 1 cut(s) | 564 |
| Bst2BI | CACGAG | 1 cut(s) | 199 |
| Bst2UI | CCWGG | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 5 cut(s) | 236, 313, 410, 462, 473 |
| BstDEI | CTNAG | 1 cut(s) | 465 |
| BstHHI | GCGC | 4 cut(s) | 327, 345, 424, 453 |
| BstKTI | GATC | 1 cut(s) | 385 |
| BstMAI | GTCTC | 2 cut(s) | 226, 260 |
| BstMBI | GATC | 1 cut(s) | 382 |
| BstMCI | CGRYCG | 1 cut(s) | 530 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 349, 457, 598 |
| BstNI | CCWGG | 1 cut(s) | 516 |
| BstSCI | CCNGG | 2 cut(s) | 59, 514 |
| BstSFI | CTRYAG | 2 cut(s) | 125, 147 |
| BstV1I | GCAGC | 4 cut(s) | 108, 111, 307, 446 |
| BstX2I | RGATCY | 1 cut(s) | 382 |
| BstYI | RGATCY | 1 cut(s) | 382 |
| BstZI | CGGCCG | 1 cut(s) | 527 |
| BsuRI | GGCC | 7 cut(s) | 45, 81, 95, 277, 488, 509, 529 |
| BveI | ACCTGC | 5 cut(s) | 97, 208, 218, 242, 393 |
| Cac8I | GCNNGC | 5 cut(s) | 236, 313, 410, 462, 473 |
| CaiI | CAGNNNCTG | 3 cut(s) | 166, 210, 244 |
| CfoI | GCGC | 4 cut(s) | 327, 345, 424, 453 |
| Cfr10I | RCCGGY | 4 cut(s) | 488, 509, 529, 550 |
| Cfr13I | GGNCC | 3 cut(s) | 275, 486, 512 |
| Csp6I | GTAC | 1 cut(s) | 330 |
| CviQI | GTAC | 1 cut(s) | 330 |
| DdeI | CTNAG | 1 cut(s) | 465 |
| DpnI | GATC | 1 cut(s) | 384 |
| DpnII | GATC | 1 cut(s) | 382 |
| EaeI | YGGCCR | 5 cut(s) | 43, 79, 93, 507, 527 |
| EagI | CGGCCG | 1 cut(s) | 527 |
| EciI | GGCGGA | 1 cut(s) | 534 |
| EclXI | CGGCCG | 1 cut(s) | 527 |
| Eco130I | CCWWGG | 1 cut(s) | 564 |
| Eco24I | GRGCYC | 4 cut(s) | 200, 268, 431, 563 |
| Eco31I | GGTCTC | 2 cut(s) | 226, 260 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco52I | CGGCCG | 1 cut(s) | 527 |
| EcoO109I | RGGNCCY | 1 cut(s) | 275 |
| EcoRII | CCWGG | 1 cut(s) | 514 |
| EcoT14I | CCWWGG | 1 cut(s) | 564 |
| EcoT38I | GRGCYC | 4 cut(s) | 200, 268, 431, 563 |
| ErhI | CCWWGG | 1 cut(s) | 564 |
| FaiI | YATR | 4 cut(s) | 180, 191, 455, 585 |
| FauI | CCCGC | 2 cut(s) | 131, 276 |
| FblI | GTMKAC | 1 cut(s) | 367 |
| Fnu4HI | GCNGC | 5 cut(s) | 122, 125, 296, 435, 548 |
| FriOI | GRGCYC | 4 cut(s) | 200, 268, 431, 563 |
| Fsp4HI | GCNGC | 5 cut(s) | 122, 125, 296, 435, 548 |
| FspAI | RTGCGCAY | 2 cut(s) | 344, 452 |
| FspBI | CTAG | 1 cut(s) | 102 |
| FspI | TGCGCA | 4 cut(s) | 326, 344, 423, 452 |
| GlaI | GCGC | 4 cut(s) | 326, 344, 423, 452 |
| GluI | GCNGC | 5 cut(s) | 122, 125, 296, 435, 548 |
| HaeIII | GGCC | 7 cut(s) | 45, 81, 95, 277, 488, 509, 529 |
| HhaI | GCGC | 4 cut(s) | 327, 345, 424, 453 |
| Hin6I | GCGC | 4 cut(s) | 325, 343, 422, 451 |
| HinP1I | GCGC | 4 cut(s) | 325, 343, 422, 451 |
| HincII | GTYRAC | 1 cut(s) | 368 |
| HindII | GTYRAC | 1 cut(s) | 368 |
| HinfI | GANTC | 1 cut(s) | 439 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 1 cut(s) | 368 |
| Hpy188I | TCNGA | 2 cut(s) | 495, 504 |
| Hpy188III | TCNNGA | 1 cut(s) | 19 |
| Hpy8I | GTNNAC | 1 cut(s) | 368 |
| HpyAV | CCTTC | 1 cut(s) | 605 |
| HpyCH4V | TGCA | 7 cut(s) | 116, 127, 171, 204, 238, 408, 601 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 349, 457, 598 |
| HpyF3I | CTNAG | 1 cut(s) | 465 |
| HspAI | GCGC | 4 cut(s) | 325, 343, 422, 451 |
| Kzo9I | GATC | 1 cut(s) | 382 |
| LmnI | GCTCC | 2 cut(s) | 98, 566 |
| Lsp1109I | GCAGC | 4 cut(s) | 108, 111, 307, 446 |
| LweI | GCATC | 2 cut(s) | 330, 438 |
| MaeI | CTAG | 1 cut(s) | 102 |
| MaeIII | GTNAC | 2 cut(s) | 152, 614 |
| MalI | GATC | 1 cut(s) | 384 |
| MboI | GATC | 1 cut(s) | 382 |
| MboII | GAAGA | 1 cut(s) | 50 |
| MflI | RGATCY | 1 cut(s) | 382 |
| MhlI | GDGCHC | 4 cut(s) | 200, 268, 431, 563 |
| MluCI | AATT | 2 cut(s) | 496, 621 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MnlI | CCTC | 1 cut(s) | 178 |
| MslI | CAYNNNNRTG | 2 cut(s) | 320, 417 |
| MspR9I | CCNGG | 2 cut(s) | 61, 516 |
| MvaI | CCWGG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 349, 457, 598 |
| NciI | CCSGG | 1 cut(s) | 61 |
| NdeII | GATC | 1 cut(s) | 382 |
| NlaIV | GGNNCC | 6 cut(s) | 9, 276, 487, 534, 543, 562 |
| NmeAIII | GCCGAG | 9 cut(s) | 203, 237, 247, 313, 336, 356, 366, 410, 421 |
| NmuCI | GTSAC | 1 cut(s) | 152 |
| NsbI | TGCGCA | 4 cut(s) | 326, 344, 423, 452 |
| OliI | CACNNNNGTG | 2 cut(s) | 320, 417 |
| PaqCI | CACCTGC | 2 cut(s) | 218, 393 |
| PkrI | GCNGC | 5 cut(s) | 123, 126, 297, 436, 549 |
| PleI | GAGTC | 1 cut(s) | 433 |
| PpsI | GAGTC | 1 cut(s) | 433 |
| Psp6I | CCWGG | 1 cut(s) | 514 |
| PspGI | CCWGG | 1 cut(s) | 514 |
| PspN4I | GGNNCC | 6 cut(s) | 9, 276, 487, 534, 543, 562 |
| PspPI | GGNCC | 3 cut(s) | 275, 486, 512 |
| PstI | CTGCAG | 1 cut(s) | 129 |
| PstNI | CAGNNNCTG | 3 cut(s) | 166, 210, 244 |
| PsuI | RGATCY | 1 cut(s) | 382 |
| RsaI | GTAC | 1 cut(s) | 331 |
| RsaNI | GTAC | 1 cut(s) | 330 |
| RseI | CAYNNNNRTG | 2 cut(s) | 320, 417 |
| SalI | GTCGAC | 1 cut(s) | 366 |
| SatI | GCNGC | 5 cut(s) | 122, 125, 296, 435, 548 |
| Sau3AI | GATC | 1 cut(s) | 382 |
| Sau96I | GGNCC | 3 cut(s) | 275, 486, 512 |
| ScaI | AGTACT | 1 cut(s) | 331 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 2 cut(s) | 61, 516 |
| SduI | GDGCHC | 4 cut(s) | 200, 268, 431, 563 |
| SfaNI | GCATC | 2 cut(s) | 330, 438 |
| SfcI | CTRYAG | 2 cut(s) | 125, 147 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 320, 417 |
| Sse9I | AATT | 2 cut(s) | 496, 621 |
| SsiI | CCGC | 6 cut(s) | 138, 182, 283, 545, 548, 592 |
| SspMI | CTAG | 1 cut(s) | 102 |
| StyD4I | CCNGG | 2 cut(s) | 59, 514 |
| StyI | CCWWGG | 1 cut(s) | 564 |
| TaqI | TCGA | 2 cut(s) | 367, 580 |
| TasI | AATT | 2 cut(s) | 496, 621 |
| TatI | WGTACW | 1 cut(s) | 329 |
| TauI | GCSGC | 1 cut(s) | 550 |
| TseFI | GTSAC | 1 cut(s) | 152 |
| TseI | GCWGC | 4 cut(s) | 121, 124, 295, 434 |
| Tsp45I | GTSAC | 1 cut(s) | 152 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XapI | RAATTY | 1 cut(s) | 496 |
| XmiI | GTMKAC | 1 cut(s) | 367 |
| XspI | CTAG | 1 cut(s) | 102 |
| ZrmI | AGTACT | 1 cut(s) | 331 |