Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 71 - 192 | 9.9e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 199, 376 |
| AciI | CCGC | 2 cut(s) | 293, 344 |
| AcsI | RAATTY | 4 cut(s) | 122, 454, 522, 709 |
| AfaI | GTAC | 2 cut(s) | 104, 536 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 142, 194, 738 |
| AgsI | TTSAA | 4 cut(s) | 80, 98, 407, 512 |
| AjnI | CCWGG | 2 cut(s) | 54, 752 |
| Alw26I | GTCTC | 1 cut(s) | 608 |
| AoxI | GGCC | 1 cut(s) | 164 |
| ApeKI | GCWGC | 2 cut(s) | 221, 431 |
| ApoI | RAATTY | 4 cut(s) | 122, 454, 522, 709 |
| AsuC2I | CCSGG | 1 cut(s) | 733 |
| AsuHPI | GGTGA | 1 cut(s) | 563 |
| BaeGI | GKGCMC | 1 cut(s) | 284 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 518, 551 |
| BbsI | GAAGAC | 1 cut(s) | 356 |
| BbvI | GCAGC | 2 cut(s) | 208, 418 |
| BccI | CCATC | 2 cut(s) | 144, 271 |
| BciT130I | CCWGG | 2 cut(s) | 56, 754 |
| BcnI | CCSGG | 1 cut(s) | 733 |
| BcoDI | GTCTC | 1 cut(s) | 608 |
| BfaI | CTAG | 2 cut(s) | 150, 579 |
| BfmI | CTRYAG | 1 cut(s) | 669 |
| BisI | GCNGC | 3 cut(s) | 222, 294, 432 |
| BlpI | GCTNAGC | 1 cut(s) | 744 |
| BlsI | GCNGC | 3 cut(s) | 223, 295, 433 |
| Bme1390I | CCNGG | 3 cut(s) | 56, 733, 754 |
| BmiI | GGNNCC | 1 cut(s) | 730 |
| BmrFI | CCNGG | 3 cut(s) | 56, 733, 754 |
| BmsI | GCATC | 3 cut(s) | 208, 262, 544 |
| BpiI | GAAGAC | 1 cut(s) | 356 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 744 |
| BpuMI | CCSGG | 1 cut(s) | 733 |
| Bsa29I | ATCGAT | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 3 cut(s) | 141, 382, 752 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 249, 279 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 142, 194, 738 |
| BseBI | CCWGG | 2 cut(s) | 56, 754 |
| BseCI | ATCGAT | 1 cut(s) | 216 |
| BseDI | CCNNGG | 3 cut(s) | 141, 382, 752 |
| BseGI | GGATG | 1 cut(s) | 136 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 142, 194, 738 |
| BseMII | CTCAG | 2 cut(s) | 182, 735 |
| BseRI | GAGGAG | 2 cut(s) | 461, 464 |
| BseSI | GKGCMC | 1 cut(s) | 284 |
| BseXI | GCAGC | 2 cut(s) | 208, 418 |
| BsgI | GTGCAG | 1 cut(s) | 373 |
| BshFI | GGCC | 1 cut(s) | 166 |
| BshVI | ATCGAT | 1 cut(s) | 216 |
| BsiSI | CCGG | 1 cut(s) | 732 |
| BslFI | GGGAC | 1 cut(s) | 679 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 142, 194, 738 |
| BsmAI | GTCTC | 1 cut(s) | 608 |
| BsmFI | GGGAC | 1 cut(s) | 679 |
| BsmI | GAATGC | 1 cut(s) | 316 |
| BsnI | GGCC | 1 cut(s) | 166 |
| Bsp1286I | GDGCHC | 1 cut(s) | 284 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 744 |
| BspACI | CCGC | 2 cut(s) | 293, 344 |
| BspANI | GGCC | 1 cut(s) | 166 |
| BspCNI | CTCAG | 2 cut(s) | 183, 736 |
| BspDI | ATCGAT | 1 cut(s) | 216 |
| BspLI | GGNNCC | 1 cut(s) | 730 |
| BssECI | CCNNGG | 3 cut(s) | 141, 382, 752 |
| BssNAI | GTATAC | 1 cut(s) | 377 |
| BssT1I | CCWWGG | 2 cut(s) | 141, 382 |
| Bst1107I | GTATAC | 1 cut(s) | 377 |
| Bst2UI | CCWGG | 2 cut(s) | 56, 754 |
| Bst4CI | ACNGT | 2 cut(s) | 242, 539 |
| Bst6I | CTCTTC | 1 cut(s) | 155 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 575 |
| BstC8I | GCNNGC | 1 cut(s) | 352 |
| BstDEI | CTNAG | 2 cut(s) | 191, 744 |
| BstF5I | GGATG | 1 cut(s) | 136 |
| BstMAI | GTCTC | 1 cut(s) | 608 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 299, 575 |
| BstNI | CCWGG | 2 cut(s) | 56, 754 |
| BstSCI | CCNGG | 3 cut(s) | 54, 731, 752 |
| BstSFI | CTRYAG | 1 cut(s) | 669 |
| BstSLI | GKGCMC | 1 cut(s) | 284 |
| BstV1I | GCAGC | 2 cut(s) | 208, 418 |
| BstV2I | GAAGAC | 1 cut(s) | 356 |
| BstZ17I | GTATAC | 1 cut(s) | 377 |
| Bsu15I | ATCGAT | 1 cut(s) | 216 |
| BsuRI | GGCC | 1 cut(s) | 166 |
| BsuTUI | ATCGAT | 1 cut(s) | 216 |
| BtgZI | GCGATG | 1 cut(s) | 290 |
| BtsCI | GGATG | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 1 cut(s) | 352 |
| ClaI | ATCGAT | 1 cut(s) | 216 |
| CsiI | ACCWGGT | 1 cut(s) | 54 |
| Csp6I | GTAC | 2 cut(s) | 103, 535 |
| CviAII | CATG | 1 cut(s) | 499 |
| CviJI | RGCY | 6 cut(s) | 166, 173, 296, 329, 743, 748 |
| CviKI_1 | RGCY | 6 cut(s) | 166, 173, 296, 329, 743, 748 |
| CviQI | GTAC | 2 cut(s) | 103, 535 |
| DdeI | CTNAG | 2 cut(s) | 191, 744 |
| Eam1104I | CTCTTC | 1 cut(s) | 155 |
| EarI | CTCTTC | 1 cut(s) | 155 |
| Eco130I | CCWWGG | 2 cut(s) | 141, 382 |
| Eco147I | AGGCCT | 1 cut(s) | 166 |
| EcoRI | GAATTC | 2 cut(s) | 122, 522 |
| EcoRII | CCWGG | 2 cut(s) | 54, 752 |
| EcoT14I | CCWWGG | 2 cut(s) | 141, 382 |
| ErhI | CCWWGG | 2 cut(s) | 141, 382 |
| FaeI | CATG | 1 cut(s) | 502 |
| FaqI | GGGAC | 1 cut(s) | 679 |
| FatI | CATG | 1 cut(s) | 498 |
| FauNDI | CATATG | 2 cut(s) | 90, 531 |
| FblI | GTMKAC | 2 cut(s) | 199, 376 |
| Fnu4HI | GCNGC | 3 cut(s) | 222, 294, 432 |
| FokI | GGATG | 1 cut(s) | 123 |
| Fsp4HI | GCNGC | 3 cut(s) | 222, 294, 432 |
| FspBI | CTAG | 2 cut(s) | 150, 579 |
| GluI | GCNGC | 3 cut(s) | 222, 294, 432 |
| HaeIII | GGCC | 1 cut(s) | 166 |
| HapII | CCGG | 1 cut(s) | 732 |
| Hin1II | CATG | 1 cut(s) | 502 |
| HinfI | GANTC | 2 cut(s) | 413, 616 |
| HpaII | CCGG | 1 cut(s) | 732 |
| HphI | GGTGA | 1 cut(s) | 563 |
| Hpy166II | GTNNAC | 3 cut(s) | 200, 235, 377 |
| Hpy188I | TCNGA | 4 cut(s) | 192, 269, 463, 521 |
| Hpy188III | TCNNGA | 1 cut(s) | 632 |
| Hpy8I | GTNNAC | 3 cut(s) | 200, 235, 377 |
| HpyAV | CCTTC | 1 cut(s) | 58 |
| HpyCH4III | ACNGT | 2 cut(s) | 242, 539 |
| HpyCH4V | TGCA | 6 cut(s) | 302, 316, 354, 557, 569, 706 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 299, 575 |
| HpyF3I | CTNAG | 2 cut(s) | 191, 744 |
| Hsp92II | CATG | 1 cut(s) | 502 |
| LpnPI | CCDG | 9 cut(s) | 41, 68, 180, 573, 617, 633, 669, 739, 745 |
| Lsp1109I | GCAGC | 2 cut(s) | 208, 418 |
| LweI | GCATC | 3 cut(s) | 208, 262, 544 |
| MabI | ACCWGGT | 1 cut(s) | 54 |
| MaeI | CTAG | 2 cut(s) | 150, 579 |
| MaeIII | GTNAC | 1 cut(s) | 662 |
| MboII | GAAGA | 4 cut(s) | 169, 172, 356, 359 |
| MhlI | GDGCHC | 1 cut(s) | 284 |
| MluCI | AATT | 5 cut(s) | 122, 396, 454, 522, 709 |
| MlyI | GAGTC | 2 cut(s) | 407, 610 |
| MmeI | TCCRAC | 3 cut(s) | 96, 226, 368 |
| MseI | TTAA | 2 cut(s) | 228, 714 |
| MspI | CCGG | 1 cut(s) | 732 |
| MspR9I | CCNGG | 3 cut(s) | 56, 733, 754 |
| Mva1269I | GAATGC | 1 cut(s) | 316 |
| MvaI | CCWGG | 2 cut(s) | 56, 754 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 299, 575 |
| NciI | CCSGG | 1 cut(s) | 733 |
| NdeI | CATATG | 2 cut(s) | 90, 531 |
| NlaIII | CATG | 1 cut(s) | 502 |
| NlaIV | GGNNCC | 1 cut(s) | 730 |
| NmeAIII | GCCGAG | 1 cut(s) | 305 |
| PceI | AGGCCT | 1 cut(s) | 166 |
| PctI | GAATGC | 1 cut(s) | 316 |
| PkrI | GCNGC | 3 cut(s) | 223, 295, 433 |
| PleI | GAGTC | 2 cut(s) | 407, 610 |
| PpsI | GAGTC | 2 cut(s) | 407, 610 |
| Psp6I | CCWGG | 2 cut(s) | 54, 752 |
| PspGI | CCWGG | 2 cut(s) | 54, 752 |
| PspN4I | GGNNCC | 1 cut(s) | 730 |
| RsaI | GTAC | 2 cut(s) | 104, 536 |
| RsaNI | GTAC | 2 cut(s) | 103, 535 |
| SaqAI | TTAA | 2 cut(s) | 228, 714 |
| SatI | GCNGC | 3 cut(s) | 222, 294, 432 |
| SchI | GAGTC | 2 cut(s) | 407, 610 |
| ScrFI | CCNGG | 3 cut(s) | 56, 733, 754 |
| SduI | GDGCHC | 1 cut(s) | 284 |
| SetI | ASST | 8 cut(s) | 57, 85, 234, 388, 468, 576, 688, 758 |
| SexAI | ACCWGGT | 1 cut(s) | 54 |
| SfaNI | GCATC | 3 cut(s) | 208, 262, 544 |
| SfcI | CTRYAG | 1 cut(s) | 669 |
| Sse9I | AATT | 5 cut(s) | 122, 396, 454, 522, 709 |
| SseBI | AGGCCT | 1 cut(s) | 166 |
| SsiI | CCGC | 2 cut(s) | 293, 344 |
| SspMI | CTAG | 2 cut(s) | 150, 579 |
| StuI | AGGCCT | 1 cut(s) | 166 |
| StyD4I | CCNGG | 3 cut(s) | 54, 731, 752 |
| StyI | CCWWGG | 2 cut(s) | 141, 382 |
| TaaI | ACNGT | 2 cut(s) | 242, 539 |
| TaqI | TCGA | 3 cut(s) | 216, 472, 526 |
| TasI | AATT | 5 cut(s) | 122, 396, 454, 522, 709 |
| TauI | GCSGC | 1 cut(s) | 296 |
| Tru1I | TTAA | 2 cut(s) | 228, 714 |
| Tru9I | TTAA | 2 cut(s) | 228, 714 |
| TseI | GCWGC | 2 cut(s) | 221, 431 |
| TspDTI | ATGAA | 1 cut(s) | 77 |
| TspGWI | ACGGA | 1 cut(s) | 407 |
| XapI | RAATTY | 4 cut(s) | 122, 454, 522, 709 |
| XmiI | GTMKAC | 2 cut(s) | 199, 376 |
| XspI | CTAG | 2 cut(s) | 150, 579 |