Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FKBP_C | PF00254 | 42 - 133 | 9.5e-39 | FKBP-type peptidyl-prolyl cis-trans isomerase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 254 |
| AccB1I | GGYRCC | 1 cut(s) | 368 |
| AciI | CCGC | 2 cut(s) | 15, 278 |
| AclWI | GGATC | 2 cut(s) | 212, 345 |
| AcsI | RAATTY | 1 cut(s) | 402 |
| AfaI | GTAC | 2 cut(s) | 107, 159 |
| AflII | CTTAAG | 1 cut(s) | 128 |
| AgsI | TTSAA | 4 cut(s) | 209, 310, 401, 420 |
| AjnI | CCWGG | 1 cut(s) | 361 |
| AluBI | AGCT | 3 cut(s) | 235, 394, 436 |
| AluI | AGCT | 3 cut(s) | 235, 394, 436 |
| Alw21I | GWGCWC | 1 cut(s) | 396 |
| AlwI | GGATC | 2 cut(s) | 212, 345 |
| AoxI | GGCC | 2 cut(s) | 12, 48 |
| ApoI | RAATTY | 1 cut(s) | 402 |
| AspLEI | GCGC | 1 cut(s) | 303 |
| AspS9I | GGNCC | 1 cut(s) | 265 |
| AsuC2I | CCSGG | 2 cut(s) | 64, 167 |
| AsuHPI | GGTGA | 2 cut(s) | 155, 227 |
| AvaII | GGWCC | 1 cut(s) | 265 |
| BanI | GGYRCC | 1 cut(s) | 368 |
| BanII | GRGCYC | 1 cut(s) | 396 |
| Bbv12I | GWGCWC | 1 cut(s) | 396 |
| BccI | CCATC | 2 cut(s) | 176, 255 |
| BciT130I | CCWGG | 1 cut(s) | 363 |
| BcnI | CCSGG | 2 cut(s) | 64, 167 |
| BfaI | CTAG | 1 cut(s) | 201 |
| BfmI | CTRYAG | 1 cut(s) | 437 |
| BfrI | CTTAAG | 1 cut(s) | 128 |
| BisI | GCNGC | 1 cut(s) | 15 |
| BlsI | GCNGC | 1 cut(s) | 16 |
| Bme1390I | CCNGG | 3 cut(s) | 64, 167, 363 |
| Bme18I | GGWCC | 1 cut(s) | 265 |
| BmgT120I | GGNCC | 1 cut(s) | 265 |
| BmiI | GGNNCC | 2 cut(s) | 266, 370 |
| BmrFI | CCNGG | 3 cut(s) | 64, 167, 363 |
| BpuMI | CCSGG | 2 cut(s) | 64, 167 |
| BsaJI | CCNNGG | 3 cut(s) | 51, 166, 268 |
| BseBI | CCWGG | 1 cut(s) | 363 |
| BseDI | CCNNGG | 3 cut(s) | 51, 166, 268 |
| BseGI | GGATG | 2 cut(s) | 12, 266 |
| BseMII | CTCAG | 1 cut(s) | 381 |
| BshFI | GGCC | 2 cut(s) | 14, 50 |
| BshNI | GGYRCC | 1 cut(s) | 368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 396 |
| BsiSI | CCGG | 2 cut(s) | 63, 166 |
| BslFI | GGGAC | 1 cut(s) | 278 |
| BsmFI | GGGAC | 1 cut(s) | 278 |
| BsnI | GGCC | 2 cut(s) | 14, 50 |
| Bsp1286I | GDGCHC | 1 cut(s) | 396 |
| Bsp143I | GATC | 2 cut(s) | 217, 337 |
| BspACI | CCGC | 2 cut(s) | 15, 278 |
| BspANI | GGCC | 2 cut(s) | 14, 50 |
| BspCNI | CTCAG | 1 cut(s) | 382 |
| BspLI | GGNNCC | 2 cut(s) | 266, 370 |
| BspPI | GGATC | 2 cut(s) | 212, 345 |
| BspT107I | GGYRCC | 1 cut(s) | 368 |
| BspTI | CTTAAG | 1 cut(s) | 128 |
| BssECI | CCNNGG | 3 cut(s) | 51, 166, 268 |
| BssMI | GATC | 2 cut(s) | 217, 337 |
| BssT1I | CCWWGG | 2 cut(s) | 51, 268 |
| Bst2UI | CCWGG | 1 cut(s) | 363 |
| Bst4CI | ACNGT | 1 cut(s) | 190 |
| Bst6I | CTCTTC | 1 cut(s) | 45 |
| BstAFI | CTTAAG | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 1 cut(s) | 136 |
| BstDEI | CTNAG | 1 cut(s) | 390 |
| BstF5I | GGATG | 2 cut(s) | 12, 266 |
| BstHHI | GCGC | 1 cut(s) | 303 |
| BstKTI | GATC | 2 cut(s) | 220, 340 |
| BstMBI | GATC | 2 cut(s) | 217, 337 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 300 |
| BstNI | CCWGG | 1 cut(s) | 363 |
| BstSCI | CCNGG | 3 cut(s) | 62, 165, 361 |
| BstSFI | CTRYAG | 1 cut(s) | 437 |
| BsuRI | GGCC | 2 cut(s) | 14, 50 |
| BtsCI | GGATG | 2 cut(s) | 12, 266 |
| BtsIMutI | CAGTG | 2 cut(s) | 374, 387 |
| Cac8I | GCNNGC | 1 cut(s) | 136 |
| CfoI | GCGC | 1 cut(s) | 303 |
| Cfr13I | GGNCC | 1 cut(s) | 265 |
| Csp6I | GTAC | 2 cut(s) | 106, 158 |
| CviJI | RGCY | 9 cut(s) | 14, 50, 56, 112, 134, 235, 330, 394, 436 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 50, 56, 112, 134, 235, 330, 394, 436 |
| CviQI | GTAC | 2 cut(s) | 106, 158 |
| DdeI | CTNAG | 1 cut(s) | 390 |
| DpnI | GATC | 2 cut(s) | 219, 339 |
| DpnII | GATC | 2 cut(s) | 217, 337 |
| Eam1104I | CTCTTC | 1 cut(s) | 45 |
| EarI | CTCTTC | 1 cut(s) | 45 |
| Ecl136II | GAGCTC | 1 cut(s) | 394 |
| Eco130I | CCWWGG | 2 cut(s) | 51, 268 |
| Eco24I | GRGCYC | 1 cut(s) | 396 |
| Eco47I | GGWCC | 1 cut(s) | 265 |
| Eco53kI | GAGCTC | 1 cut(s) | 394 |
| EcoICRI | GAGCTC | 1 cut(s) | 394 |
| EcoRII | CCWGG | 1 cut(s) | 361 |
| EcoT14I | CCWWGG | 2 cut(s) | 51, 268 |
| EcoT38I | GRGCYC | 1 cut(s) | 396 |
| ErhI | CCWWGG | 2 cut(s) | 51, 268 |
| FaiI | YATR | 5 cut(s) | 23, 254, 324, 326, 333 |
| FaqI | GGGAC | 1 cut(s) | 278 |
| FauI | CCCGC | 1 cut(s) | 271 |
| FauNDI | CATATG | 1 cut(s) | 324 |
| Fnu4HI | GCNGC | 1 cut(s) | 15 |
| FokI | GGATG | 2 cut(s) | 19, 273 |
| FriOI | GRGCYC | 1 cut(s) | 396 |
| Fsp4HI | GCNGC | 1 cut(s) | 15 |
| FspBI | CTAG | 1 cut(s) | 201 |
| GlaI | GCGC | 1 cut(s) | 302 |
| GluI | GCNGC | 1 cut(s) | 15 |
| HaeIII | GGCC | 2 cut(s) | 14, 50 |
| HapII | CCGG | 2 cut(s) | 63, 166 |
| HhaI | GCGC | 1 cut(s) | 303 |
| Hin6I | GCGC | 1 cut(s) | 301 |
| HinP1I | GCGC | 1 cut(s) | 301 |
| HinfI | GANTC | 3 cut(s) | 31, 197, 416 |
| HpaII | CCGG | 2 cut(s) | 63, 166 |
| HphI | GGTGA | 2 cut(s) | 155, 227 |
| Hpy166II | GTNNAC | 2 cut(s) | 125, 160 |
| Hpy188III | TCNNGA | 1 cut(s) | 28 |
| Hpy8I | GTNNAC | 2 cut(s) | 125, 160 |
| Hpy99I | CGWCG | 1 cut(s) | 431 |
| HpyAV | CCTTC | 3 cut(s) | 4, 61, 327 |
| HpyCH4III | ACNGT | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 1 cut(s) | 91 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 300 |
| HpyF3I | CTNAG | 1 cut(s) | 390 |
| HspAI | GCGC | 1 cut(s) | 301 |
| Kzo9I | GATC | 2 cut(s) | 217, 337 |
| LmnI | GCTCC | 1 cut(s) | 433 |
| LpnPI | CCDG | 7 cut(s) | 76, 126, 139, 179, 326, 348, 375 |
| MaeI | CTAG | 1 cut(s) | 201 |
| MalI | GATC | 2 cut(s) | 219, 339 |
| MboI | GATC | 2 cut(s) | 217, 337 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 396 |
| MluCI | AATT | 2 cut(s) | 273, 402 |
| MnlI | CCTC | 1 cut(s) | 48 |
| MseI | TTAA | 1 cut(s) | 129 |
| MspCI | CTTAAG | 1 cut(s) | 128 |
| MspI | CCGG | 2 cut(s) | 63, 166 |
| MspR9I | CCNGG | 3 cut(s) | 64, 167, 363 |
| MvaI | CCWGG | 1 cut(s) | 363 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 300 |
| NciI | CCSGG | 2 cut(s) | 64, 167 |
| NdeI | CATATG | 1 cut(s) | 324 |
| NdeII | GATC | 2 cut(s) | 217, 337 |
| NlaIV | GGNNCC | 2 cut(s) | 266, 370 |
| PfeI | GAWTC | 3 cut(s) | 31, 197, 416 |
| PkrI | GCNGC | 1 cut(s) | 16 |
| PsiI | TTATAA | 1 cut(s) | 254 |
| Psp124BI | GAGCTC | 1 cut(s) | 396 |
| Psp6I | CCWGG | 1 cut(s) | 361 |
| PspGI | CCWGG | 1 cut(s) | 361 |
| PspN4I | GGNNCC | 2 cut(s) | 266, 370 |
| PspPI | GGNCC | 1 cut(s) | 265 |
| RsaI | GTAC | 2 cut(s) | 107, 159 |
| RsaNI | GTAC | 2 cut(s) | 106, 158 |
| SacI | GAGCTC | 1 cut(s) | 396 |
| SaqAI | TTAA | 1 cut(s) | 129 |
| SatI | GCNGC | 1 cut(s) | 15 |
| Sau3AI | GATC | 2 cut(s) | 217, 337 |
| Sau96I | GGNCC | 1 cut(s) | 265 |
| ScrFI | CCNGG | 3 cut(s) | 64, 167, 363 |
| SduI | GDGCHC | 1 cut(s) | 396 |
| SetI | ASST | 8 cut(s) | 72, 89, 145, 237, 319, 367, 396, 438 |
| SfcI | CTRYAG | 1 cut(s) | 437 |
| SinI | GGWCC | 1 cut(s) | 265 |
| SmlI | CTYRAG | 1 cut(s) | 128 |
| SmoI | CTYRAG | 1 cut(s) | 128 |
| Sse9I | AATT | 2 cut(s) | 273, 402 |
| SsiI | CCGC | 2 cut(s) | 15, 278 |
| SspMI | CTAG | 1 cut(s) | 201 |
| SstI | GAGCTC | 1 cut(s) | 396 |
| StyD4I | CCNGG | 3 cut(s) | 62, 165, 361 |
| StyI | CCWWGG | 2 cut(s) | 51, 268 |
| TaaI | ACNGT | 1 cut(s) | 190 |
| TaqI | TCGA | 1 cut(s) | 384 |
| TasI | AATT | 2 cut(s) | 273, 402 |
| TatI | WGTACW | 1 cut(s) | 105 |
| TauI | GCSGC | 1 cut(s) | 17 |
| TfiI | GAWTC | 3 cut(s) | 31, 197, 416 |
| Tru1I | TTAA | 1 cut(s) | 129 |
| Tru9I | TTAA | 1 cut(s) | 129 |
| TscAI | CASTG | 2 cut(s) | 381, 394 |
| TspDTI | ATGAA | 1 cut(s) | 23 |
| TspRI | CASTG | 2 cut(s) | 381, 394 |
| Vha464I | CTTAAG | 1 cut(s) | 128 |
| VpaK11BI | GGWCC | 1 cut(s) | 265 |
| XapI | RAATTY | 1 cut(s) | 402 |
| XspI | CTAG | 1 cut(s) | 201 |