Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UDPGT | PF00201 | 76 - 205 | 3.7e-26 | UDP-glucoronosyl and UDP-glucosyl transferase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 148 |
| AccB1I | GGYRCC | 1 cut(s) | 148 |
| AccI | GTMKAC | 1 cut(s) | 192 |
| AciI | CCGC | 3 cut(s) | 41, 128, 511 |
| AcsI | RAATTY | 1 cut(s) | 498 |
| AfaI | GTAC | 1 cut(s) | 150 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 274, 404, 473 |
| AgsI | TTSAA | 3 cut(s) | 62, 94, 703 |
| AjnI | CCWGG | 1 cut(s) | 365 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 425, 457 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 296, 328, 345, 377 |
| AluBI | AGCT | 7 cut(s) | 25, 243, 290, 599, 655, 692, 707 |
| AluI | AGCT | 7 cut(s) | 25, 243, 290, 599, 655, 692, 707 |
| Alw26I | GTCTC | 2 cut(s) | 622, 659 |
| AoxI | GGCC | 2 cut(s) | 125, 479 |
| ApeKI | GCWGC | 1 cut(s) | 25 |
| ApoI | RAATTY | 1 cut(s) | 498 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 41, 73 |
| Asp718I | GGTACC | 1 cut(s) | 148 |
| AspS9I | GGNCC | 2 cut(s) | 125, 674 |
| AsuHPI | GGTGA | 1 cut(s) | 382 |
| AsuII | TTCGAA | 1 cut(s) | 74 |
| AvaII | GGWCC | 1 cut(s) | 674 |
| BaeGI | GKGCMC | 1 cut(s) | 262 |
| BanI | GGYRCC | 1 cut(s) | 148 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 176, 208 |
| BbvCI | CCTCAGC | 1 cut(s) | 291 |
| BbvI | GCAGC | 1 cut(s) | 12 |
| BciT130I | CCWGG | 1 cut(s) | 367 |
| BclI | TGATCA | 1 cut(s) | 493 |
| BcoDI | GTCTC | 2 cut(s) | 622, 659 |
| BfaI | CTAG | 1 cut(s) | 137 |
| BisI | GCNGC | 2 cut(s) | 26, 128 |
| BlsI | GCNGC | 2 cut(s) | 27, 129 |
| Bme1390I | CCNGG | 1 cut(s) | 367 |
| Bme18I | GGWCC | 1 cut(s) | 674 |
| BmgT120I | GGNCC | 2 cut(s) | 125, 674 |
| BmiI | GGNNCC | 3 cut(s) | 150, 314, 676 |
| BmrFI | CCNGG | 1 cut(s) | 367 |
| BmsI | GCATC | 2 cut(s) | 233, 353 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 676, 708 |
| BpmI | CTGGAG | 1 cut(s) | 594 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| Bpu14I | TTCGAA | 1 cut(s) | 74 |
| BpuEI | CTTGAG | 4 cut(s) | 89, 629, 645, 678 |
| BsaJI | CCNNGG | 4 cut(s) | 84, 200, 365, 366 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 274, 404, 473 |
| Bse1I | ACTGG | 1 cut(s) | 355 |
| BseBI | CCWGG | 1 cut(s) | 367 |
| BseDI | CCNNGG | 4 cut(s) | 84, 200, 365, 366 |
| BseGI | GGATG | 2 cut(s) | 193, 394 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 274, 404, 473 |
| BseMII | CTCAG | 1 cut(s) | 282 |
| BseNI | ACTGG | 1 cut(s) | 355 |
| BseRI | GAGGAG | 3 cut(s) | 101, 191, 194 |
| BseSI | GKGCMC | 1 cut(s) | 262 |
| BseXI | GCAGC | 1 cut(s) | 12 |
| Bsh1285I | CGRYCG | 1 cut(s) | 146 |
| BshFI | GGCC | 2 cut(s) | 127, 481 |
| BshNI | GGYRCC | 1 cut(s) | 148 |
| BsiEI | CGRYCG | 1 cut(s) | 146 |
| BslFI | GGGAC | 1 cut(s) | 30 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 274, 404, 473 |
| BsmAI | GTCTC | 2 cut(s) | 622, 659 |
| BsmFI | GGGAC | 1 cut(s) | 30 |
| BsnI | GGCC | 2 cut(s) | 127, 481 |
| Bsp119I | TTCGAA | 1 cut(s) | 74 |
| Bsp1286I | GDGCHC | 1 cut(s) | 262 |
| Bsp143I | GATC | 3 cut(s) | 493, 534, 717 |
| BspACI | CCGC | 3 cut(s) | 41, 128, 511 |
| BspANI | GGCC | 2 cut(s) | 127, 481 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspHI | TCATGA | 1 cut(s) | 728 |
| BspLI | GGNNCC | 3 cut(s) | 150, 314, 676 |
| BspT104I | TTCGAA | 1 cut(s) | 74 |
| BspT107I | GGYRCC | 1 cut(s) | 148 |
| BsrI | ACTGG | 1 cut(s) | 355 |
| BssECI | CCNNGG | 4 cut(s) | 84, 200, 365, 366 |
| BssMI | GATC | 3 cut(s) | 493, 534, 717 |
| BssNAI | GTATAC | 1 cut(s) | 193 |
| Bst1107I | GTATAC | 1 cut(s) | 193 |
| Bst2UI | CCWGG | 1 cut(s) | 367 |
| Bst4CI | ACNGT | 3 cut(s) | 153, 201, 670 |
| BstBI | TTCGAA | 1 cut(s) | 74 |
| BstC8I | GCNNGC | 2 cut(s) | 222, 657 |
| BstDEI | CTNAG | 1 cut(s) | 291 |
| BstDSI | CCRYGG | 1 cut(s) | 200 |
| BstF5I | GGATG | 2 cut(s) | 193, 394 |
| BstKTI | GATC | 3 cut(s) | 496, 537, 720 |
| BstMAI | GTCTC | 2 cut(s) | 622, 659 |
| BstMBI | GATC | 3 cut(s) | 493, 534, 717 |
| BstMCI | CGRYCG | 1 cut(s) | 146 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 230, 287 |
| BstNI | CCWGG | 1 cut(s) | 367 |
| BstSCI | CCNGG | 1 cut(s) | 365 |
| BstSLI | GKGCMC | 1 cut(s) | 262 |
| BstV1I | GCAGC | 1 cut(s) | 12 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 324 |
| BstZ17I | GTATAC | 1 cut(s) | 193 |
| BsuRI | GGCC | 2 cut(s) | 127, 481 |
| BtgI | CCRYGG | 1 cut(s) | 200 |
| BtsCI | GGATG | 2 cut(s) | 193, 394 |
| BtsI | GCAGTG | 1 cut(s) | 260 |
| BtsIMutI | CAGTG | 1 cut(s) | 260 |
| Cac8I | GCNNGC | 2 cut(s) | 222, 657 |
| CciI | TCATGA | 1 cut(s) | 728 |
| Cfr13I | GGNCC | 2 cut(s) | 125, 674 |
| Csp6I | GTAC | 1 cut(s) | 149 |
| CviAII | CATG | 2 cut(s) | 422, 729 |
| CviQI | GTAC | 1 cut(s) | 149 |
| DdeI | CTNAG | 1 cut(s) | 291 |
| DpnI | GATC | 3 cut(s) | 495, 536, 719 |
| DpnII | GATC | 3 cut(s) | 493, 534, 717 |
| Eco147I | AGGCCT | 1 cut(s) | 481 |
| Eco47I | GGWCC | 1 cut(s) | 674 |
| EcoRII | CCWGG | 1 cut(s) | 365 |
| FaeI | CATG | 2 cut(s) | 425, 732 |
| FaiI | YATR | 8 cut(s) | 9, 193, 235, 423, 470, 509, 542, 730 |
| FaqI | GGGAC | 1 cut(s) | 30 |
| FatI | CATG | 2 cut(s) | 421, 728 |
| FbaI | TGATCA | 1 cut(s) | 493 |
| FblI | GTMKAC | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 2 cut(s) | 26, 128 |
| FokI | GGATG | 2 cut(s) | 200, 381 |
| Fsp4HI | GCNGC | 2 cut(s) | 26, 128 |
| FspBI | CTAG | 1 cut(s) | 137 |
| GluI | GCNGC | 2 cut(s) | 26, 128 |
| GsuI | CTGGAG | 1 cut(s) | 594 |
| HaeIII | GGCC | 2 cut(s) | 127, 481 |
| Hin1II | CATG | 2 cut(s) | 425, 732 |
| HinfI | GANTC | 4 cut(s) | 71, 102, 546, 642 |
| HphI | GGTGA | 1 cut(s) | 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 373 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 504 |
| Hpy188III | TCNNGA | 5 cut(s) | 106, 573, 662, 695, 729 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 373 |
| Hpy99I | CGWCG | 1 cut(s) | 403 |
| HpyAV | CCTTC | 2 cut(s) | 178, 299 |
| HpyCH4III | ACNGT | 3 cut(s) | 153, 201, 670 |
| HpyCH4V | TGCA | 2 cut(s) | 224, 382 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 230, 287 |
| HpyF3I | CTNAG | 1 cut(s) | 291 |
| Hsp92II | CATG | 2 cut(s) | 425, 732 |
| KpnI | GGTACC | 1 cut(s) | 152 |
| Ksp22I | TGATCA | 1 cut(s) | 493 |
| Kzo9I | GATC | 3 cut(s) | 493, 534, 717 |
| LmnI | GCTCC | 3 cut(s) | 120, 513, 575 |
| LpnPI | CCDG | 7 cut(s) | 191, 234, 336, 352, 379, 558, 695 |
| Lsp1109I | GCAGC | 1 cut(s) | 12 |
| LweI | GCATC | 2 cut(s) | 233, 353 |
| MaeI | CTAG | 1 cut(s) | 137 |
| MaeIII | GTNAC | 2 cut(s) | 415, 451 |
| MalI | GATC | 3 cut(s) | 495, 536, 719 |
| MboI | GATC | 3 cut(s) | 493, 534, 717 |
| MboII | GAAGA | 2 cut(s) | 106, 544 |
| MhlI | GDGCHC | 1 cut(s) | 262 |
| MluCI | AATT | 1 cut(s) | 498 |
| MlyI | GAGTC | 2 cut(s) | 96, 651 |
| MmeI | TCCRAC | 3 cut(s) | 410, 619, 652 |
| MnlI | CCTC | 9 cut(s) | 79, 169, 172, 268, 286, 295, 471, 492, 544 |
| MseI | TTAA | 1 cut(s) | 648 |
| MspR9I | CCNGG | 1 cut(s) | 367 |
| MvaI | CCWGG | 1 cut(s) | 367 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 230, 287 |
| NdeII | GATC | 3 cut(s) | 493, 534, 717 |
| NlaIII | CATG | 2 cut(s) | 425, 732 |
| NlaIV | GGNNCC | 3 cut(s) | 150, 314, 676 |
| NspV | TTCGAA | 1 cut(s) | 74 |
| PagI | TCATGA | 1 cut(s) | 728 |
| PasI | CCCWGGG | 1 cut(s) | 366 |
| PceI | AGGCCT | 1 cut(s) | 481 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 555 |
| PfeI | GAWTC | 2 cut(s) | 71, 546 |
| PkrI | GCNGC | 2 cut(s) | 27, 129 |
| PleI | GAGTC | 2 cut(s) | 96, 650 |
| PpsI | GAGTC | 2 cut(s) | 96, 650 |
| Psp6I | CCWGG | 1 cut(s) | 365 |
| PspGI | CCWGG | 1 cut(s) | 365 |
| PspN4I | GGNNCC | 3 cut(s) | 150, 314, 676 |
| PspPI | GGNCC | 2 cut(s) | 125, 674 |
| RsaI | GTAC | 1 cut(s) | 150 |
| RsaNI | GTAC | 1 cut(s) | 149 |
| SaqAI | TTAA | 1 cut(s) | 648 |
| SatI | GCNGC | 2 cut(s) | 26, 128 |
| Sau3AI | GATC | 3 cut(s) | 493, 534, 717 |
| Sau96I | GGNCC | 2 cut(s) | 125, 674 |
| SchI | GAGTC | 2 cut(s) | 96, 651 |
| ScrFI | CCNGG | 1 cut(s) | 367 |
| SduI | GDGCHC | 1 cut(s) | 262 |
| SetI | ASST | 9 cut(s) | 27, 245, 279, 292, 588, 601, 657, 694, 709 |
| SfaNI | GCATC | 2 cut(s) | 233, 353 |
| SfuI | TTCGAA | 1 cut(s) | 74 |
| SinI | GGWCC | 1 cut(s) | 674 |
| SmlI | CTYRAG | 4 cut(s) | 104, 608, 660, 693 |
| SmoI | CTYRAG | 4 cut(s) | 104, 608, 660, 693 |
| Sse9I | AATT | 1 cut(s) | 498 |
| SseBI | AGGCCT | 1 cut(s) | 481 |
| SsiI | CCGC | 3 cut(s) | 41, 128, 511 |
| SspMI | CTAG | 1 cut(s) | 137 |
| StuI | AGGCCT | 1 cut(s) | 481 |
| StyD4I | CCNGG | 1 cut(s) | 365 |
| TaaI | ACNGT | 3 cut(s) | 153, 201, 670 |
| TaqI | TCGA | 3 cut(s) | 74, 401, 549 |
| TaqII | GACCGA | 1 cut(s) | 132 |
| TasI | AATT | 1 cut(s) | 498 |
| TauI | GCSGC | 1 cut(s) | 130 |
| TfiI | GAWTC | 2 cut(s) | 71, 546 |
| Tru1I | TTAA | 1 cut(s) | 648 |
| Tru9I | TTAA | 1 cut(s) | 648 |
| TscAI | CASTG | 1 cut(s) | 267 |
| TseI | GCWGC | 1 cut(s) | 25 |
| TspGWI | ACGGA | 1 cut(s) | 387 |
| TspRI | CASTG | 1 cut(s) | 267 |
| VpaK11BI | GGWCC | 1 cut(s) | 674 |
| XapI | RAATTY | 1 cut(s) | 498 |
| XmiI | GTMKAC | 1 cut(s) | 192 |
| XspI | CTAG | 1 cut(s) | 137 |