Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 660 |
| AatII | GACGTC | 1 cut(s) | 342 |
| AccB1I | GGYRCC | 2 cut(s) | 178, 308 |
| AccBSI | CCGCTC | 1 cut(s) | 219 |
| AccI | GTMKAC | 1 cut(s) | 342 |
| AccII | CGCG | 1 cut(s) | 519 |
| AclWI | GGATC | 4 cut(s) | 262, 322, 345, 422 |
| AcoI | YGGCCR | 1 cut(s) | 390 |
| AcsI | RAATTY | 4 cut(s) | 586, 677, 760, 1033 |
| AcyI | GRCGYC | 1 cut(s) | 339 |
| AfaI | GTAC | 1 cut(s) | 1115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 388 |
| AgsI | TTSAA | 4 cut(s) | 461, 626, 830, 851 |
| AjiI | CACGTC | 1 cut(s) | 320 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 462, 494 |
| AleI | CACNNNNGTG | 1 cut(s) | 176 |
| AluBI | AGCT | 2 cut(s) | 277, 919 |
| AluI | AGCT | 2 cut(s) | 277, 919 |
| Alw21I | GWGCWC | 1 cut(s) | 279 |
| Alw26I | GTCTC | 2 cut(s) | 383, 391 |
| AlwI | GGATC | 4 cut(s) | 262, 322, 345, 422 |
| Ama87I | CYCGRG | 1 cut(s) | 272 |
| AoxI | GGCC | 3 cut(s) | 313, 390, 883 |
| ApaI | GGGCCC | 1 cut(s) | 887 |
| ApeKI | GCWGC | 2 cut(s) | 224, 916 |
| ApoI | RAATTY | 4 cut(s) | 586, 677, 760, 1033 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1033 |
| AspLEI | GCGC | 1 cut(s) | 519 |
| AspS9I | GGNCC | 6 cut(s) | 6, 314, 450, 863, 883, 884 |
| AsuHPI | GGTGA | 4 cut(s) | 64, 87, 314, 536 |
| AvaI | CYCGRG | 1 cut(s) | 272 |
| AvaII | GGWCC | 3 cut(s) | 6, 450, 863 |
| BaeGI | GKGCMC | 1 cut(s) | 887 |
| BanI | GGYRCC | 2 cut(s) | 178, 308 |
| BanII | GRGCYC | 2 cut(s) | 279, 887 |
| BbsI | GAAGAC | 1 cut(s) | 1069 |
| Bbv12I | GWGCWC | 1 cut(s) | 279 |
| BbvI | GCAGC | 2 cut(s) | 236, 928 |
| BccI | CCATC | 1 cut(s) | 377 |
| BceAI | ACGGC | 1 cut(s) | 122 |
| BclI | TGATCA | 3 cut(s) | 799, 951, 1057 |
| BcoDI | GTCTC | 2 cut(s) | 383, 391 |
| BfaI | CTAG | 2 cut(s) | 501, 920 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 140 |
| BisI | GCNGC | 4 cut(s) | 135, 225, 290, 917 |
| BlsI | GCNGC | 4 cut(s) | 136, 226, 291, 918 |
| Bme18I | GGWCC | 3 cut(s) | 6, 450, 863 |
| BmeT110I | CYCGRG | 1 cut(s) | 272 |
| BmgBI | CACGTC | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 6 cut(s) | 6, 314, 450, 863, 883, 884 |
| BmiI | GGNNCC | 6 cut(s) | 7, 8, 180, 214, 310, 885 |
| BmsI | GCATC | 2 cut(s) | 822, 868 |
| BpiI | GAAGAC | 1 cut(s) | 1069 |
| BpmI | CTGGAG | 1 cut(s) | 358 |
| Bpu10I | CCTNAGC | 1 cut(s) | 20 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BsaHI | GRCGYC | 1 cut(s) | 339 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 453 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 87, 117, 356, 386 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 388 |
| Bse118I | RCCGGY | 1 cut(s) | 311 |
| Bse1I | ACTGG | 1 cut(s) | 375 |
| Bse3DI | GCAATG | 2 cut(s) | 284, 1068 |
| BseDI | CCNNGG | 2 cut(s) | 138, 453 |
| BseGI | GGATG | 1 cut(s) | 813 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 388 |
| BseMI | GCAATG | 2 cut(s) | 284, 1068 |
| BseMII | CTCAG | 2 cut(s) | 372, 851 |
| BseNI | ACTGG | 1 cut(s) | 375 |
| BseRI | GAGGAG | 2 cut(s) | 371, 548 |
| BseSI | GKGCMC | 1 cut(s) | 887 |
| BseXI | GCAGC | 2 cut(s) | 236, 928 |
| Bsh1236I | CGCG | 1 cut(s) | 519 |
| BshFI | GGCC | 3 cut(s) | 315, 392, 885 |
| BshNI | GGYRCC | 2 cut(s) | 178, 308 |
| BsiHKAI | GWGCWC | 1 cut(s) | 279 |
| BsiHKCI | CYCGRG | 1 cut(s) | 272 |
| BsiSI | CCGG | 2 cut(s) | 306, 312 |
| BslFI | GGGAC | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 388 |
| BsmAI | GTCTC | 2 cut(s) | 383, 391 |
| BsmBI | CGTCTC | 1 cut(s) | 391 |
| BsmFI | GGGAC | 1 cut(s) | 19 |
| BsnI | GGCC | 3 cut(s) | 315, 392, 885 |
| BsoBI | CYCGRG | 1 cut(s) | 272 |
| Bsp120I | GGGCCC | 1 cut(s) | 883 |
| Bsp1286I | GDGCHC | 2 cut(s) | 279, 887 |
| BspANI | GGCC | 3 cut(s) | 315, 392, 885 |
| BspCNI | CTCAG | 2 cut(s) | 371, 850 |
| BspFNI | CGCG | 1 cut(s) | 519 |
| BspLI | GGNNCC | 6 cut(s) | 7, 8, 180, 214, 310, 885 |
| BspPI | GGATC | 4 cut(s) | 262, 322, 345, 422 |
| BspT107I | GGYRCC | 2 cut(s) | 178, 308 |
| BsrBI | CCGCTC | 1 cut(s) | 219 |
| BsrDI | GCAATG | 2 cut(s) | 284, 1068 |
| BsrFI | RCCGGY | 1 cut(s) | 311 |
| BsrI | ACTGG | 1 cut(s) | 375 |
| BssAI | RCCGGY | 1 cut(s) | 311 |
| BssECI | CCNNGG | 2 cut(s) | 138, 453 |
| BssNI | GRCGYC | 1 cut(s) | 339 |
| Bst4CI | ACNGT | 3 cut(s) | 782, 907, 1045 |
| Bst6I | CTCTTC | 1 cut(s) | 690 |
| BstACI | GRCGYC | 1 cut(s) | 339 |
| BstC8I | GCNNGC | 2 cut(s) | 50, 883 |
| BstDEI | CTNAG | 3 cut(s) | 20, 358, 837 |
| BstDSI | CCRYGG | 2 cut(s) | 138, 453 |
| BstF5I | GGATG | 1 cut(s) | 813 |
| BstFNI | CGCG | 1 cut(s) | 519 |
| BstHHI | GCGC | 1 cut(s) | 519 |
| BstMAI | GTCTC | 2 cut(s) | 383, 391 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 54, 140 |
| BstSLI | GKGCMC | 1 cut(s) | 887 |
| BstUI | CGCG | 1 cut(s) | 519 |
| BstV1I | GCAGC | 2 cut(s) | 236, 928 |
| BstV2I | GAAGAC | 1 cut(s) | 1069 |
| BstX2I | RGATCY | 2 cut(s) | 267, 327 |
| BstYI | RGATCY | 2 cut(s) | 267, 327 |
| BsuRI | GGCC | 3 cut(s) | 315, 392, 885 |
| BtgI | CCRYGG | 2 cut(s) | 138, 453 |
| BtgZI | GCGATG | 1 cut(s) | 265 |
| BtrI | CACGTC | 1 cut(s) | 320 |
| BtsCI | GGATG | 1 cut(s) | 813 |
| BtsIMutI | CAGTG | 1 cut(s) | 764 |
| Cac8I | GCNNGC | 2 cut(s) | 50, 883 |
| CfoI | GCGC | 1 cut(s) | 519 |
| Cfr10I | RCCGGY | 1 cut(s) | 311 |
| Cfr13I | GGNCC | 6 cut(s) | 6, 314, 450, 863, 883, 884 |
| Csp6I | GTAC | 1 cut(s) | 1114 |
| CviAII | CATG | 5 cut(s) | 148, 425, 803, 942, 1111 |
| CviQI | GTAC | 1 cut(s) | 1114 |
| DdeI | CTNAG | 3 cut(s) | 20, 358, 837 |
| DraI | TTTAAA | 1 cut(s) | 931 |
| EaeI | YGGCCR | 1 cut(s) | 390 |
| Eam1104I | CTCTTC | 1 cut(s) | 690 |
| EarI | CTCTTC | 1 cut(s) | 690 |
| Ecl136II | GAGCTC | 1 cut(s) | 277 |
| Eco24I | GRGCYC | 2 cut(s) | 279, 887 |
| Eco47I | GGWCC | 3 cut(s) | 6, 450, 863 |
| Eco53kI | GAGCTC | 1 cut(s) | 277 |
| Eco88I | CYCGRG | 1 cut(s) | 272 |
| EcoICRI | GAGCTC | 1 cut(s) | 277 |
| EcoO109I | RGGNCCY | 2 cut(s) | 6, 884 |
| EcoRI | GAATTC | 1 cut(s) | 760 |
| EcoT38I | GRGCYC | 2 cut(s) | 279, 887 |
| Esp3I | CGTCTC | 1 cut(s) | 391 |
| FaeI | CATG | 5 cut(s) | 151, 428, 806, 945, 1114 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 46, 78 |
| FaqI | GGGAC | 1 cut(s) | 19 |
| FatI | CATG | 5 cut(s) | 147, 424, 802, 941, 1110 |
| FauI | CCCGC | 3 cut(s) | 224, 340, 874 |
| FbaI | TGATCA | 3 cut(s) | 799, 951, 1057 |
| FblI | GTMKAC | 1 cut(s) | 342 |
| Fnu4HI | GCNGC | 4 cut(s) | 135, 225, 290, 917 |
| FokI | GGATG | 1 cut(s) | 800 |
| FriOI | GRGCYC | 2 cut(s) | 279, 887 |
| Fsp4HI | GCNGC | 4 cut(s) | 135, 225, 290, 917 |
| FspBI | CTAG | 2 cut(s) | 501, 920 |
| GlaI | GCGC | 1 cut(s) | 518 |
| GluI | GCNGC | 4 cut(s) | 135, 225, 290, 917 |
| GsuI | CTGGAG | 1 cut(s) | 358 |
| HaeIII | GGCC | 3 cut(s) | 315, 392, 885 |
| HapII | CCGG | 2 cut(s) | 306, 312 |
| HhaI | GCGC | 1 cut(s) | 519 |
| Hin1I | GRCGYC | 1 cut(s) | 339 |
| Hin1II | CATG | 5 cut(s) | 151, 428, 806, 945, 1114 |
| Hin6I | GCGC | 1 cut(s) | 517 |
| HinP1I | GCGC | 1 cut(s) | 517 |
| HincII | GTYRAC | 1 cut(s) | 343 |
| HindII | GTYRAC | 1 cut(s) | 343 |
| HinfI | GANTC | 3 cut(s) | 108, 365, 470 |
| HpaII | CCGG | 2 cut(s) | 306, 312 |
| HphI | GGTGA | 4 cut(s) | 64, 87, 314, 536 |
| Hpy166II | GTNNAC | 1 cut(s) | 343 |
| Hpy188I | TCNGA | 9 cut(s) | 107, 232, 350, 404, 414, 571, 856, 911, 1028 |
| Hpy188III | TCNNGA | 6 cut(s) | 265, 461, 501, 530, 551, 788 |
| Hpy8I | GTNNAC | 1 cut(s) | 343 |
| Hpy99I | CGWCG | 1 cut(s) | 344 |
| HpyAV | CCTTC | 3 cut(s) | 198, 247, 830 |
| HpyCH4III | ACNGT | 3 cut(s) | 782, 907, 1045 |
| HpyCH4IV | ACGT | 2 cut(s) | 319, 339 |
| HpyCH4V | TGCA | 6 cut(s) | 48, 151, 635, 813, 997, 1073 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 54, 140 |
| HpyF3I | CTNAG | 3 cut(s) | 20, 358, 837 |
| HpySE526I | ACGT | 2 cut(s) | 319, 339 |
| Hsp92I | GRCGYC | 1 cut(s) | 339 |
| Hsp92II | CATG | 5 cut(s) | 151, 428, 806, 945, 1114 |
| HspAI | GCGC | 1 cut(s) | 517 |
| KflI | GGGWCCC | 1 cut(s) | 6 |
| Ksp22I | TGATCA | 3 cut(s) | 799, 951, 1057 |
| LmnI | GCTCC | 4 cut(s) | 218, 224, 404, 745 |
| LpnPI | CCDG | 8 cut(s) | 88, 319, 325, 338, 388, 742, 900, 975 |
| Lsp1109I | GCAGC | 2 cut(s) | 236, 928 |
| LweI | GCATC | 2 cut(s) | 822, 868 |
| MaeI | CTAG | 2 cut(s) | 501, 920 |
| MaeII | ACGT | 2 cut(s) | 319, 339 |
| MaeIII | GTNAC | 3 cut(s) | 320, 593, 901 |
| MbiI | CCGCTC | 1 cut(s) | 219 |
| MboII | GAAGA | 3 cut(s) | 699, 707, 1069 |
| MflI | RGATCY | 2 cut(s) | 267, 327 |
| MhlI | GDGCHC | 2 cut(s) | 279, 887 |
| MluCI | AATT | 6 cut(s) | 586, 621, 677, 760, 1021, 1033 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| MmeI | TCCRAC | 1 cut(s) | 889 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1033 |
| MseI | TTAA | 3 cut(s) | 167, 446, 930 |
| MslI | CAYNNNNRTG | 1 cut(s) | 176 |
| MspA1I | CMGCKG | 2 cut(s) | 176, 335 |
| MspI | CCGG | 2 cut(s) | 306, 312 |
| MvnI | CGCG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 54, 140 |
| NlaIII | CATG | 5 cut(s) | 151, 428, 806, 945, 1114 |
| NlaIV | GGNNCC | 6 cut(s) | 7, 8, 180, 214, 310, 885 |
| NmeAIII | GCCGAG | 1 cut(s) | 368 |
| NmuCI | GTSAC | 1 cut(s) | 320 |
| OliI | CACNNNNGTG | 1 cut(s) | 176 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 516 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1033 |
| PfeI | GAWTC | 2 cut(s) | 108, 470 |
| PkrI | GCNGC | 4 cut(s) | 136, 226, 291, 918 |
| PleI | GAGTC | 1 cut(s) | 359 |
| PpsI | GAGTC | 1 cut(s) | 359 |
| PpuMI | RGGWCCY | 1 cut(s) | 6 |
| PsiI | TTATAA | 1 cut(s) | 660 |
| Psp124BI | GAGCTC | 1 cut(s) | 279 |
| Psp5II | RGGWCCY | 1 cut(s) | 6 |
| PspN4I | GGNNCC | 6 cut(s) | 7, 8, 180, 214, 310, 885 |
| PspOMI | GGGCCC | 1 cut(s) | 883 |
| PspPI | GGNCC | 6 cut(s) | 6, 314, 450, 863, 883, 884 |
| PspPPI | RGGWCCY | 1 cut(s) | 6 |
| PsuI | RGATCY | 2 cut(s) | 267, 327 |
| RsaI | GTAC | 1 cut(s) | 1115 |
| RsaNI | GTAC | 1 cut(s) | 1114 |
| RseI | CAYNNNNRTG | 1 cut(s) | 176 |
| SacI | GAGCTC | 1 cut(s) | 279 |
| SalI | GTCGAC | 1 cut(s) | 341 |
| SaqAI | TTAA | 3 cut(s) | 167, 446, 930 |
| SatI | GCNGC | 4 cut(s) | 135, 225, 290, 917 |
| Sau96I | GGNCC | 6 cut(s) | 6, 314, 450, 863, 883, 884 |
| SchI | GAGTC | 1 cut(s) | 359 |
| SduI | GDGCHC | 2 cut(s) | 279, 887 |
| SfaNI | GCATC | 2 cut(s) | 822, 868 |
| SinI | GGWCC | 3 cut(s) | 6, 450, 863 |
| SmiI | ATTTAAAT | 1 cut(s) | 931 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 176 |
| SmlI | CTYRAG | 1 cut(s) | 263 |
| SmoI | CTYRAG | 1 cut(s) | 263 |
| Sse9I | AATT | 6 cut(s) | 586, 621, 677, 760, 1021, 1033 |
| SspMI | CTAG | 2 cut(s) | 501, 920 |
| SstI | GAGCTC | 1 cut(s) | 279 |
| SwaI | ATTTAAAT | 1 cut(s) | 931 |
| TaaI | ACNGT | 3 cut(s) | 782, 907, 1045 |
| TaiI | ACGT | 2 cut(s) | 322, 342 |
| TaqI | TCGA | 5 cut(s) | 252, 342, 550, 777, 1049 |
| TaqII | GACCGA | 1 cut(s) | 410 |
| TasI | AATT | 6 cut(s) | 586, 621, 677, 760, 1021, 1033 |
| TauI | GCSGC | 2 cut(s) | 137, 292 |
| TfiI | GAWTC | 2 cut(s) | 108, 470 |
| Tru1I | TTAA | 3 cut(s) | 167, 446, 930 |
| Tru9I | TTAA | 3 cut(s) | 167, 446, 930 |
| TscAI | CASTG | 1 cut(s) | 771 |
| TseFI | GTSAC | 1 cut(s) | 320 |
| TseI | GCWGC | 2 cut(s) | 224, 916 |
| Tsp45I | GTSAC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 4 cut(s) | 55, 930, 1057, 1099 |
| TspGWI | ACGGA | 2 cut(s) | 442, 463 |
| TspRI | CASTG | 1 cut(s) | 771 |
| VpaK11BI | GGWCC | 3 cut(s) | 6, 450, 863 |
| XapI | RAATTY | 4 cut(s) | 586, 677, 760, 1033 |
| XbaI | TCTAGA | 1 cut(s) | 500 |
| XmiI | GTMKAC | 1 cut(s) | 342 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1033 |
| XspI | CTAG | 2 cut(s) | 501, 920 |
| ZraI | GACGTC | 1 cut(s) | 340 |