ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 342 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 245 |
| AccII | CGCG | 1 cut(s) | 291 |
| AciI | CCGC | 1 cut(s) | 291 |
| AcoI | YGGCCR | 1 cut(s) | 254 |
| AcsI | RAATTY | 1 cut(s) | 307 |
| AcvI | CACGTG | 1 cut(s) | 174 |
| AfaI | GTAC | 1 cut(s) | 25 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 128, 245 |
| AjnI | CCWGG | 1 cut(s) | 251 |
| AluBI | AGCT | 3 cut(s) | 151, 199, 269 |
| AluI | AGCT | 3 cut(s) | 151, 199, 269 |
| Alw21I | GWGCWC | 1 cut(s) | 153 |
| Ama87I | CYCGRG | 1 cut(s) | 327 |
| AoxI | GGCC | 1 cut(s) | 254 |
| ApeKI | GCWGC | 2 cut(s) | 220, 269 |
| ApoI | RAATTY | 1 cut(s) | 307 |
| AspLEI | GCGC | 1 cut(s) | 291 |
| AvaI | CYCGRG | 1 cut(s) | 327 |
| BanII | GRGCYC | 1 cut(s) | 153 |
| BauI | CACGAG | 1 cut(s) | 99 |
| BbrPI | CACGTG | 1 cut(s) | 174 |
| Bbv12I | GWGCWC | 1 cut(s) | 153 |
| BbvI | GCAGC | 2 cut(s) | 207, 256 |
| BccI | CCATC | 1 cut(s) | 24 |
| BceAI | ACGGC | 1 cut(s) | 241 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 29 |
| BciT130I | CCWGG | 1 cut(s) | 253 |
| BglII | AGATCT | 1 cut(s) | 60 |
| BisI | GCNGC | 2 cut(s) | 221, 270 |
| BlpI | GCTNAGC | 1 cut(s) | 195 |
| BlsI | GCNGC | 2 cut(s) | 222, 271 |
| Bme1390I | CCNGG | 1 cut(s) | 253 |
| BmeT110I | CYCGRG | 1 cut(s) | 327 |
| BmiI | GGNNCC | 1 cut(s) | 250 |
| BmrFI | CCNGG | 1 cut(s) | 253 |
| BmsI | GCATC | 1 cut(s) | 286 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 195 |
| BsaAI | YACGTR | 1 cut(s) | 174 |
| BsaJI | CCNNGG | 1 cut(s) | 107 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 128, 245 |
| Bse1I | ACTGG | 2 cut(s) | 138, 172 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 253 |
| BseDI | CCNNGG | 1 cut(s) | 107 |
| BseGI | GGATG | 2 cut(s) | 39, 277 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 128, 245 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 3 cut(s) | 138, 186, 225 |
| BseNI | ACTGG | 2 cut(s) | 138, 172 |
| BseXI | GCAGC | 2 cut(s) | 207, 256 |
| Bsh1236I | CGCG | 1 cut(s) | 291 |
| BshFI | GGCC | 1 cut(s) | 256 |
| BsiHKAI | GWGCWC | 1 cut(s) | 153 |
| BsiHKCI | CYCGRG | 1 cut(s) | 327 |
| BslFI | GGGAC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 128, 245 |
| BsmFI | GGGAC | 1 cut(s) | 89 |
| BsnI | GGCC | 1 cut(s) | 256 |
| BsoBI | CYCGRG | 1 cut(s) | 327 |
| Bsp1286I | GDGCHC | 1 cut(s) | 153 |
| Bsp143I | GATC | 2 cut(s) | 60, 157 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 195 |
| BspACI | CCGC | 1 cut(s) | 291 |
| BspANI | GGCC | 1 cut(s) | 256 |
| BspCNI | CTCAG | 3 cut(s) | 139, 187, 224 |
| BspFNI | CGCG | 1 cut(s) | 291 |
| BspLI | GGNNCC | 1 cut(s) | 250 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrI | ACTGG | 2 cut(s) | 138, 172 |
| BssECI | CCNNGG | 1 cut(s) | 107 |
| BssMI | GATC | 2 cut(s) | 60, 157 |
| BssSI | CACGAG | 1 cut(s) | 99 |
| BssT1I | CCWWGG | 1 cut(s) | 107 |
| Bst2BI | CACGAG | 1 cut(s) | 99 |
| Bst2UI | CCWGG | 1 cut(s) | 253 |
| BstBAI | YACGTR | 1 cut(s) | 174 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 3 cut(s) | 147, 195, 211 |
| BstF5I | GGATG | 2 cut(s) | 39, 277 |
| BstFNI | CGCG | 1 cut(s) | 291 |
| BstHHI | GCGC | 1 cut(s) | 291 |
| BstKTI | GATC | 2 cut(s) | 63, 160 |
| BstMBI | GATC | 2 cut(s) | 60, 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 196 |
| BstNI | CCWGG | 1 cut(s) | 253 |
| BstSCI | CCNGG | 1 cut(s) | 251 |
| BstUI | CGCG | 1 cut(s) | 291 |
| BstV1I | GCAGC | 2 cut(s) | 207, 256 |
| BstX2I | RGATCY | 1 cut(s) | 60 |
| BstYI | RGATCY | 1 cut(s) | 60 |
| BsuRI | GGCC | 1 cut(s) | 256 |
| BtsCI | GGATG | 2 cut(s) | 39, 277 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| CfoI | GCGC | 1 cut(s) | 291 |
| Csp6I | GTAC | 1 cut(s) | 24 |
| CviAII | CATG | 1 cut(s) | 273 |
| CviJI | RGCY | 6 cut(s) | 118, 151, 199, 256, 269, 314 |
| CviKI_1 | RGCY | 6 cut(s) | 118, 151, 199, 256, 269, 314 |
| CviQI | GTAC | 1 cut(s) | 24 |
| DdeI | CTNAG | 3 cut(s) | 147, 195, 211 |
| DpnI | GATC | 2 cut(s) | 62, 159 |
| DpnII | GATC | 2 cut(s) | 60, 157 |
| EaeI | YGGCCR | 1 cut(s) | 254 |
| Ecl136II | GAGCTC | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 1 cut(s) | 107 |
| Eco24I | GRGCYC | 1 cut(s) | 153 |
| Eco53kI | GAGCTC | 1 cut(s) | 151 |
| Eco72I | CACGTG | 1 cut(s) | 174 |
| Eco88I | CYCGRG | 1 cut(s) | 327 |
| EcoICRI | GAGCTC | 1 cut(s) | 151 |
| EcoRII | CCWGG | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 1 cut(s) | 107 |
| EcoT38I | GRGCYC | 1 cut(s) | 153 |
| ErhI | CCWWGG | 1 cut(s) | 107 |
| FaeI | CATG | 1 cut(s) | 276 |
| FaiI | YATR | 4 cut(s) | 96, 274, 296, 342 |
| FaqI | GGGAC | 1 cut(s) | 89 |
| FatI | CATG | 1 cut(s) | 272 |
| Fnu4HI | GCNGC | 2 cut(s) | 221, 270 |
| FokI | GGATG | 2 cut(s) | 46, 264 |
| FriOI | GRGCYC | 1 cut(s) | 153 |
| Fsp4HI | GCNGC | 2 cut(s) | 221, 270 |
| GlaI | GCGC | 1 cut(s) | 290 |
| GluI | GCNGC | 2 cut(s) | 221, 270 |
| HaeIII | GGCC | 1 cut(s) | 256 |
| HhaI | GCGC | 1 cut(s) | 291 |
| Hin1II | CATG | 1 cut(s) | 276 |
| Hin6I | GCGC | 1 cut(s) | 289 |
| HinP1I | GCGC | 1 cut(s) | 289 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HpaI | GTTAAC | 1 cut(s) | 127 |
| Hpy166II | GTNNAC | 3 cut(s) | 26, 127, 300 |
| Hpy188I | TCNGA | 3 cut(s) | 148, 162, 214 |
| Hpy188III | TCNNGA | 1 cut(s) | 329 |
| Hpy8I | GTNNAC | 3 cut(s) | 26, 127, 300 |
| Hpy99I | CGWCG | 1 cut(s) | 326 |
| HpyCH4IV | ACGT | 2 cut(s) | 173, 321 |
| HpyCH4V | TGCA | 2 cut(s) | 16, 272 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 196 |
| HpyF3I | CTNAG | 3 cut(s) | 147, 195, 211 |
| HpySE526I | ACGT | 2 cut(s) | 173, 321 |
| Hsp92II | CATG | 1 cut(s) | 276 |
| HspAI | GCGC | 1 cut(s) | 289 |
| KspAI | GTTAAC | 1 cut(s) | 127 |
| Kzo9I | GATC | 2 cut(s) | 60, 157 |
| LpnPI | CCDG | 6 cut(s) | 49, 119, 135, 153, 238, 265 |
| Lsp1109I | GCAGC | 2 cut(s) | 207, 256 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeII | ACGT | 2 cut(s) | 173, 321 |
| MaeIII | GTNAC | 2 cut(s) | 78, 111 |
| MalI | GATC | 2 cut(s) | 62, 159 |
| MboI | GATC | 2 cut(s) | 60, 157 |
| MflI | RGATCY | 1 cut(s) | 60 |
| MhlI | GDGCHC | 1 cut(s) | 153 |
| MluCI | AATT | 2 cut(s) | 307, 343 |
| MnlI | CCTC | 2 cut(s) | 129, 220 |
| MseI | TTAA | 4 cut(s) | 57, 126, 228, 242 |
| MspR9I | CCNGG | 1 cut(s) | 253 |
| MvaI | CCWGG | 1 cut(s) | 253 |
| MvnI | CGCG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 196 |
| NdeII | GATC | 2 cut(s) | 60, 157 |
| NlaIII | CATG | 1 cut(s) | 276 |
| NlaIV | GGNNCC | 1 cut(s) | 250 |
| NmuCI | GTSAC | 1 cut(s) | 111 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 245 |
| PkrI | GCNGC | 2 cut(s) | 222, 271 |
| PmaCI | CACGTG | 1 cut(s) | 174 |
| PmlI | CACGTG | 1 cut(s) | 174 |
| Ppu21I | YACGTR | 1 cut(s) | 174 |
| PsiI | TTATAA | 1 cut(s) | 342 |
| Psp124BI | GAGCTC | 1 cut(s) | 153 |
| Psp6I | CCWGG | 1 cut(s) | 251 |
| PspCI | CACGTG | 1 cut(s) | 174 |
| PspGI | CCWGG | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 1 cut(s) | 250 |
| PsuI | RGATCY | 1 cut(s) | 60 |
| RsaI | GTAC | 1 cut(s) | 25 |
| RsaNI | GTAC | 1 cut(s) | 24 |
| SacI | GAGCTC | 1 cut(s) | 153 |
| SaqAI | TTAA | 4 cut(s) | 57, 126, 228, 242 |
| SatI | GCNGC | 2 cut(s) | 221, 270 |
| Sau3AI | GATC | 2 cut(s) | 60, 157 |
| ScrFI | CCNGG | 1 cut(s) | 253 |
| SduI | GDGCHC | 1 cut(s) | 153 |
| SetI | ASST | 6 cut(s) | 95, 153, 176, 201, 271, 324 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| Sse9I | AATT | 2 cut(s) | 307, 343 |
| SsiI | CCGC | 1 cut(s) | 291 |
| SstI | GAGCTC | 1 cut(s) | 153 |
| StyD4I | CCNGG | 1 cut(s) | 251 |
| StyI | CCWWGG | 1 cut(s) | 107 |
| TaiI | ACGT | 2 cut(s) | 176, 324 |
| TasI | AATT | 2 cut(s) | 307, 343 |
| Tru1I | TTAA | 4 cut(s) | 57, 126, 228, 242 |
| Tru9I | TTAA | 4 cut(s) | 57, 126, 228, 242 |
| TseFI | GTSAC | 1 cut(s) | 111 |
| TseI | GCWGC | 2 cut(s) | 220, 269 |
| Tsp45I | GTSAC | 1 cut(s) | 111 |
| TspGWI | ACGGA | 1 cut(s) | 144 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 307 |