Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 121 |
| AccI | GTMKAC | 1 cut(s) | 374 |
| AciI | CCGC | 5 cut(s) | 41, 125, 395, 485, 542 |
| AclWI | GGATC | 2 cut(s) | 157, 460 |
| AfaI | GTAC | 1 cut(s) | 322 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 121 |
| AgsI | TTSAA | 2 cut(s) | 241, 281 |
| AluBI | AGCT | 4 cut(s) | 53, 176, 403, 595 |
| AluI | AGCT | 4 cut(s) | 53, 176, 403, 595 |
| AlwI | GGATC | 2 cut(s) | 157, 460 |
| Ama87I | CYCGRG | 1 cut(s) | 328 |
| ApeKI | GCWGC | 1 cut(s) | 474 |
| AseI | ATTAAT | 1 cut(s) | 275 |
| AsuC2I | CCSGG | 1 cut(s) | 19 |
| AsuHPI | GGTGA | 2 cut(s) | 152, 498 |
| AsuII | TTCGAA | 2 cut(s) | 223, 310 |
| AsuNHI | GCTAGC | 1 cut(s) | 253 |
| AvaI | CYCGRG | 1 cut(s) | 328 |
| BauI | CACGAG | 1 cut(s) | 456 |
| BbsI | GAAGAC | 1 cut(s) | 299 |
| BbvI | GCAGC | 1 cut(s) | 461 |
| BccI | CCATC | 2 cut(s) | 432, 518 |
| BcnI | CCSGG | 1 cut(s) | 19 |
| BfaI | CTAG | 2 cut(s) | 254, 536 |
| BisI | GCNGC | 1 cut(s) | 475 |
| BlsI | GCNGC | 1 cut(s) | 476 |
| BmcAI | AGTACT | 1 cut(s) | 322 |
| Bme1390I | CCNGG | 1 cut(s) | 19 |
| BmeT110I | CYCGRG | 1 cut(s) | 328 |
| BmrFI | CCNGG | 1 cut(s) | 19 |
| BmsI | GCATC | 2 cut(s) | 99, 377 |
| BmtI | GCTAGC | 1 cut(s) | 257 |
| BpiI | GAAGAC | 1 cut(s) | 299 |
| Bpu14I | TTCGAA | 2 cut(s) | 223, 310 |
| BpuMI | CCSGG | 1 cut(s) | 19 |
| BsaJI | CCNNGG | 1 cut(s) | 469 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 173, 203 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 121 |
| Bse3DI | GCAATG | 1 cut(s) | 390 |
| BseDI | CCNNGG | 1 cut(s) | 469 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BseMI | GCAATG | 1 cut(s) | 390 |
| BseXI | GCAGC | 1 cut(s) | 461 |
| BsiHKCI | CYCGRG | 1 cut(s) | 328 |
| BsiSI | CCGG | 2 cut(s) | 18, 287 |
| BslFI | GGGAC | 1 cut(s) | 535 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BsmFI | GGGAC | 1 cut(s) | 535 |
| BsoBI | CYCGRG | 1 cut(s) | 328 |
| Bsp119I | TTCGAA | 2 cut(s) | 223, 310 |
| Bsp143I | GATC | 2 cut(s) | 162, 465 |
| BspACI | CCGC | 5 cut(s) | 41, 125, 395, 485, 542 |
| BspOI | GCTAGC | 1 cut(s) | 257 |
| BspPI | GGATC | 2 cut(s) | 157, 460 |
| BspT104I | TTCGAA | 2 cut(s) | 223, 310 |
| BsrDI | GCAATG | 1 cut(s) | 390 |
| BssECI | CCNNGG | 1 cut(s) | 469 |
| BssMI | GATC | 2 cut(s) | 162, 465 |
| BssNAI | GTATAC | 1 cut(s) | 375 |
| BssSI | CACGAG | 1 cut(s) | 456 |
| Bst1107I | GTATAC | 1 cut(s) | 375 |
| Bst2BI | CACGAG | 1 cut(s) | 456 |
| BstBI | TTCGAA | 2 cut(s) | 223, 310 |
| BstC8I | GCNNGC | 4 cut(s) | 234, 255, 397, 401 |
| BstDEI | CTNAG | 2 cut(s) | 8, 244 |
| BstDSI | CCRYGG | 1 cut(s) | 469 |
| BstKTI | GATC | 2 cut(s) | 165, 468 |
| BstMBI | GATC | 2 cut(s) | 162, 465 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 254, 259, 268 |
| BstNSI | RCATGY | 2 cut(s) | 232, 236 |
| BstSCI | CCNGG | 1 cut(s) | 17 |
| BstV1I | GCAGC | 1 cut(s) | 461 |
| BstV2I | GAAGAC | 1 cut(s) | 299 |
| BstX2I | RGATCY | 2 cut(s) | 162, 465 |
| BstYI | RGATCY | 2 cut(s) | 162, 465 |
| BstZ17I | GTATAC | 1 cut(s) | 375 |
| BtgI | CCRYGG | 1 cut(s) | 469 |
| BtgZI | GCGATG | 1 cut(s) | 451 |
| Cac8I | GCNNGC | 4 cut(s) | 234, 255, 397, 401 |
| Csp6I | GTAC | 1 cut(s) | 321 |
| CviAII | CATG | 5 cut(s) | 70, 104, 229, 233, 514 |
| CviQI | GTAC | 1 cut(s) | 321 |
| DdeI | CTNAG | 2 cut(s) | 8, 244 |
| DpnI | GATC | 2 cut(s) | 164, 467 |
| DpnII | GATC | 2 cut(s) | 162, 465 |
| EciI | GGCGGA | 1 cut(s) | 557 |
| Eco88I | CYCGRG | 1 cut(s) | 328 |
| EcoT22I | ATGCAT | 1 cut(s) | 234 |
| FaeI | CATG | 5 cut(s) | 73, 107, 232, 236, 517 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 609 |
| FaqI | GGGAC | 1 cut(s) | 535 |
| FatI | CATG | 5 cut(s) | 69, 103, 228, 232, 513 |
| FauI | CCCGC | 2 cut(s) | 118, 388 |
| FblI | GTMKAC | 1 cut(s) | 374 |
| Fnu4HI | GCNGC | 1 cut(s) | 475 |
| Fsp4HI | GCNGC | 1 cut(s) | 475 |
| FspBI | CTAG | 2 cut(s) | 254, 536 |
| GluI | GCNGC | 1 cut(s) | 475 |
| HapII | CCGG | 2 cut(s) | 18, 287 |
| Hin1II | CATG | 5 cut(s) | 73, 107, 232, 236, 517 |
| HinfI | GANTC | 3 cut(s) | 4, 85, 290 |
| HpaII | CCGG | 2 cut(s) | 18, 287 |
| HphI | GGTGA | 2 cut(s) | 152, 498 |
| Hpy166II | GTNNAC | 1 cut(s) | 375 |
| Hpy188I | TCNGA | 2 cut(s) | 90, 604 |
| Hpy188III | TCNNGA | 1 cut(s) | 328 |
| Hpy8I | GTNNAC | 1 cut(s) | 375 |
| HpyAV | CCTTC | 6 cut(s) | 16, 69, 150, 200, 512, 611 |
| HpyCH4V | TGCA | 2 cut(s) | 112, 232 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 254, 259, 268 |
| HpyF3I | CTNAG | 2 cut(s) | 8, 244 |
| Hsp92II | CATG | 5 cut(s) | 73, 107, 232, 236, 517 |
| Kzo9I | GATC | 2 cut(s) | 162, 465 |
| LpnPI | CCDG | 2 cut(s) | 31, 300 |
| Lsp1109I | GCAGC | 1 cut(s) | 461 |
| LweI | GCATC | 2 cut(s) | 99, 377 |
| MaeI | CTAG | 2 cut(s) | 254, 536 |
| MalI | GATC | 2 cut(s) | 164, 467 |
| MboI | GATC | 2 cut(s) | 162, 465 |
| MboII | GAAGA | 3 cut(s) | 172, 299, 620 |
| MflI | RGATCY | 2 cut(s) | 162, 465 |
| MluCI | AATT | 4 cut(s) | 33, 276, 297, 549 |
| MmeI | TCCRAC | 1 cut(s) | 558 |
| MnlI | CCTC | 6 cut(s) | 19, 340, 436, 520, 574, 598 |
| Mph1103I | ATGCAT | 1 cut(s) | 234 |
| MseI | TTAA | 4 cut(s) | 32, 36, 275, 296 |
| MspI | CCGG | 2 cut(s) | 18, 287 |
| MspR9I | CCNGG | 1 cut(s) | 19 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 254, 259, 268 |
| NciI | CCSGG | 1 cut(s) | 19 |
| NdeII | GATC | 2 cut(s) | 162, 465 |
| NheI | GCTAGC | 1 cut(s) | 253 |
| NlaIII | CATG | 5 cut(s) | 73, 107, 232, 236, 517 |
| NmeAIII | GCCGAG | 1 cut(s) | 503 |
| NsiI | ATGCAT | 1 cut(s) | 234 |
| NspI | RCATGY | 2 cut(s) | 232, 236 |
| NspV | TTCGAA | 2 cut(s) | 223, 310 |
| PacI | TTAATTAA | 1 cut(s) | 36 |
| PaeI | GCATGC | 1 cut(s) | 236 |
| PfeI | GAWTC | 2 cut(s) | 85, 290 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 121 |
| PkrI | GCNGC | 1 cut(s) | 476 |
| PshBI | ATTAAT | 1 cut(s) | 275 |
| PsuI | RGATCY | 2 cut(s) | 162, 465 |
| RsaI | GTAC | 1 cut(s) | 322 |
| RsaNI | GTAC | 1 cut(s) | 321 |
| SaqAI | TTAA | 4 cut(s) | 32, 36, 275, 296 |
| SatI | GCNGC | 1 cut(s) | 475 |
| Sau3AI | GATC | 2 cut(s) | 162, 465 |
| ScaI | AGTACT | 1 cut(s) | 322 |
| ScrFI | CCNGG | 1 cut(s) | 19 |
| SetI | ASST | 9 cut(s) | 30, 55, 178, 211, 268, 405, 502, 585, 597 |
| SfaNI | GCATC | 2 cut(s) | 99, 377 |
| SfuI | TTCGAA | 2 cut(s) | 223, 310 |
| SphI | GCATGC | 1 cut(s) | 236 |
| Sse9I | AATT | 4 cut(s) | 33, 276, 297, 549 |
| SsiI | CCGC | 5 cut(s) | 41, 125, 395, 485, 542 |
| SspI | AATATT | 1 cut(s) | 449 |
| SspMI | CTAG | 2 cut(s) | 254, 536 |
| StyD4I | CCNGG | 1 cut(s) | 17 |
| TaqI | TCGA | 4 cut(s) | 223, 310, 615, 628 |
| TasI | AATT | 4 cut(s) | 33, 276, 297, 549 |
| TatI | WGTACW | 1 cut(s) | 320 |
| TfiI | GAWTC | 2 cut(s) | 85, 290 |
| Tru1I | TTAA | 4 cut(s) | 32, 36, 275, 296 |
| Tru9I | TTAA | 4 cut(s) | 32, 36, 275, 296 |
| TseI | GCWGC | 1 cut(s) | 474 |
| TspGWI | ACGGA | 2 cut(s) | 458, 539 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 121 |
| VspI | ATTAAT | 1 cut(s) | 275 |
| XceI | RCATGY | 2 cut(s) | 232, 236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 435 |
| XmiI | GTMKAC | 1 cut(s) | 374 |
| XspI | CTAG | 2 cut(s) | 254, 536 |
| ZrmI | AGTACT | 1 cut(s) | 322 |
| Zsp2I | ATGCAT | 1 cut(s) | 234 |