ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 341 |
| AccB1I | GGYRCC | 1 cut(s) | 965 |
| AccII | CGCG | 1 cut(s) | 105 |
| AciI | CCGC | 9 cut(s) | 103, 138, 146, 159, 181, 253, 301, 886, 1082 |
| AclWI | GGATC | 1 cut(s) | 253 |
| AcoI | YGGCCR | 1 cut(s) | 214 |
| AcsI | RAATTY | 3 cut(s) | 944, 1258, 1360 |
| AfaI | GTAC | 1 cut(s) | 1232 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 620 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AgsI | TTSAA | 3 cut(s) | 361, 1053, 1360 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 325 |
| AjiI | CACGTC | 2 cut(s) | 327, 994 |
| AjnI | CCWGG | 1 cut(s) | 723 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 819, 851 |
| AluBI | AGCT | 5 cut(s) | 237, 276, 357, 776, 1154 |
| AluI | AGCT | 5 cut(s) | 237, 276, 357, 776, 1154 |
| Alw21I | GWGCWC | 2 cut(s) | 690, 915 |
| Alw26I | GTCTC | 1 cut(s) | 11 |
| Alw44I | GTGCAC | 1 cut(s) | 686 |
| AlwI | GGATC | 1 cut(s) | 253 |
| Ama87I | CYCGRG | 2 cut(s) | 150, 347 |
| AoxI | GGCC | 2 cut(s) | 214, 767 |
| ApaLI | GTGCAC | 1 cut(s) | 686 |
| ApeKI | GCWGC | 1 cut(s) | 728 |
| ApoI | RAATTY | 3 cut(s) | 944, 1258, 1360 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 314, 346 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1316 |
| AspS9I | GGNCC | 1 cut(s) | 1198 |
| AsuC2I | CCSGG | 1 cut(s) | 243 |
| AsuHPI | GGTGA | 5 cut(s) | 364, 503, 542, 920, 1315 |
| AsuII | TTCGAA | 3 cut(s) | 27, 539, 754 |
| AvaI | CYCGRG | 2 cut(s) | 150, 347 |
| AvaII | GGWCC | 1 cut(s) | 1198 |
| BaeGI | GKGCMC | 1 cut(s) | 690 |
| BanI | GGYRCC | 1 cut(s) | 965 |
| Bbv12I | GWGCWC | 2 cut(s) | 690, 915 |
| BbvCI | CCTCAGC | 1 cut(s) | 233 |
| BbvI | GCAGC | 1 cut(s) | 715 |
| BccI | CCATC | 4 cut(s) | 49, 225, 899, 1061 |
| BceAI | ACGGC | 3 cut(s) | 95, 288, 421 |
| BciT130I | CCWGG | 1 cut(s) | 725 |
| BcnI | CCSGG | 1 cut(s) | 243 |
| BcoDI | GTCTC | 1 cut(s) | 11 |
| BfaI | CTAG | 6 cut(s) | 453, 882, 1062, 1151, 1299, 1331 |
| BglII | AGATCT | 1 cut(s) | 1374 |
| BisI | GCNGC | 2 cut(s) | 159, 729 |
| BlsI | GCNGC | 2 cut(s) | 160, 730 |
| Bme1390I | CCNGG | 2 cut(s) | 243, 725 |
| Bme18I | GGWCC | 1 cut(s) | 1198 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 325 |
| BmeT110I | CYCGRG | 2 cut(s) | 150, 347 |
| BmgBI | CACGTC | 2 cut(s) | 327, 994 |
| BmgT120I | GGNCC | 1 cut(s) | 1198 |
| BmiI | GGNNCC | 2 cut(s) | 702, 967 |
| BmrFI | CCNGG | 2 cut(s) | 243, 725 |
| BmsI | GCATC | 3 cut(s) | 255, 1048, 1289 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1196 |
| Bpu10I | CCTNAGC | 1 cut(s) | 233 |
| Bpu14I | TTCGAA | 3 cut(s) | 27, 539, 754 |
| BpuMI | CCSGG | 1 cut(s) | 243 |
| BsaBI | GATNNNNATC | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 2 cut(s) | 241, 346 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 170, 200 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 620 |
| Bse1I | ACTGG | 1 cut(s) | 197 |
| Bse3DI | GCAATG | 2 cut(s) | 168, 1012 |
| Bse8I | GATNNNNATC | 1 cut(s) | 263 |
| BseBI | CCWGG | 1 cut(s) | 725 |
| BseDI | CCNNGG | 2 cut(s) | 241, 346 |
| BseGI | GGATG | 2 cut(s) | 514, 1072 |
| BseJI | GATNNNNATC | 1 cut(s) | 263 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 620 |
| BseMI | GCAATG | 2 cut(s) | 168, 1012 |
| BseMII | CTCAG | 1 cut(s) | 247 |
| BseNI | ACTGG | 1 cut(s) | 197 |
| BseRI | GAGGAG | 4 cut(s) | 89, 218, 221, 878 |
| BseSI | GKGCMC | 1 cut(s) | 690 |
| BseXI | GCAGC | 1 cut(s) | 715 |
| Bsh1236I | CGCG | 1 cut(s) | 105 |
| BshFI | GGCC | 2 cut(s) | 216, 769 |
| BshNI | GGYRCC | 1 cut(s) | 965 |
| BsiHKAI | GWGCWC | 2 cut(s) | 690, 915 |
| BsiHKCI | CYCGRG | 2 cut(s) | 150, 347 |
| BsiSI | CCGG | 2 cut(s) | 213, 243 |
| BslFI | GGGAC | 1 cut(s) | 155 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 620 |
| BsmAI | GTCTC | 1 cut(s) | 11 |
| BsmBI | CGTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 1 cut(s) | 155 |
| BsmI | GAATGC | 2 cut(s) | 408, 582 |
| BsnI | GGCC | 2 cut(s) | 216, 769 |
| BsoBI | CYCGRG | 2 cut(s) | 150, 347 |
| Bsp119I | TTCGAA | 3 cut(s) | 27, 539, 754 |
| Bsp1286I | GDGCHC | 2 cut(s) | 690, 915 |
| Bsp143I | GATC | 3 cut(s) | 258, 1124, 1374 |
| BspACI | CCGC | 9 cut(s) | 103, 138, 146, 159, 181, 253, 301, 886, 1082 |
| BspANI | GGCC | 2 cut(s) | 216, 769 |
| BspCNI | CTCAG | 1 cut(s) | 246 |
| BspFNI | CGCG | 1 cut(s) | 105 |
| BspHI | TCATGA | 1 cut(s) | 816 |
| BspLI | GGNNCC | 2 cut(s) | 702, 967 |
| BspPI | GGATC | 1 cut(s) | 253 |
| BspT104I | TTCGAA | 3 cut(s) | 27, 539, 754 |
| BspT107I | GGYRCC | 1 cut(s) | 965 |
| BsrDI | GCAATG | 2 cut(s) | 168, 1012 |
| BsrI | ACTGG | 1 cut(s) | 197 |
| BssECI | CCNNGG | 2 cut(s) | 241, 346 |
| BssMI | GATC | 3 cut(s) | 258, 1124, 1374 |
| Bst2UI | CCWGG | 1 cut(s) | 725 |
| Bst4CI | ACNGT | 2 cut(s) | 524, 1316 |
| Bst6I | CTCTTC | 2 cut(s) | 374, 536 |
| BstBI | TTCGAA | 3 cut(s) | 27, 539, 754 |
| BstC8I | GCNNGC | 1 cut(s) | 970 |
| BstDEI | CTNAG | 4 cut(s) | 233, 719, 872, 1020 |
| BstF5I | GGATG | 2 cut(s) | 514, 1072 |
| BstFNI | CGCG | 1 cut(s) | 105 |
| BstKTI | GATC | 3 cut(s) | 261, 1127, 1377 |
| BstMAI | GTCTC | 1 cut(s) | 11 |
| BstMBI | GATC | 3 cut(s) | 258, 1124, 1374 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 243, 252, 1291 |
| BstNI | CCWGG | 1 cut(s) | 725 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1196 |
| BstSCI | CCNGG | 2 cut(s) | 241, 723 |
| BstSLI | GKGCMC | 1 cut(s) | 690 |
| BstUI | CGCG | 1 cut(s) | 105 |
| BstV1I | GCAGC | 1 cut(s) | 715 |
| BstX2I | RGATCY | 1 cut(s) | 1374 |
| BstYI | RGATCY | 1 cut(s) | 1374 |
| BsuRI | GGCC | 2 cut(s) | 216, 769 |
| BtgZI | GCGATG | 1 cut(s) | 1266 |
| BtrI | CACGTC | 2 cut(s) | 327, 994 |
| BtsCI | GGATG | 2 cut(s) | 514, 1072 |
| Cac8I | GCNNGC | 1 cut(s) | 970 |
| CciI | TCATGA | 1 cut(s) | 816 |
| Cfr13I | GGNCC | 1 cut(s) | 1198 |
| CseI | GACGC | 1 cut(s) | 94 |
| Csp6I | GTAC | 1 cut(s) | 1231 |
| CviAII | CATG | 3 cut(s) | 817, 1202, 1291 |
| CviQI | GTAC | 1 cut(s) | 1231 |
| DdeI | CTNAG | 4 cut(s) | 233, 719, 872, 1020 |
| DpnI | GATC | 3 cut(s) | 260, 1126, 1376 |
| DpnII | GATC | 3 cut(s) | 258, 1124, 1374 |
| DraI | TTTAAA | 2 cut(s) | 400, 571 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 341 |
| DriI | GACNNNNNGTC | 1 cut(s) | 325 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 341 |
| EaeI | YGGCCR | 1 cut(s) | 214 |
| Eam1104I | CTCTTC | 2 cut(s) | 374, 536 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 325 |
| EarI | CTCTTC | 2 cut(s) | 374, 536 |
| EciI | GGCGGA | 1 cut(s) | 1071 |
| Eco47I | GGWCC | 1 cut(s) | 1198 |
| Eco88I | CYCGRG | 2 cut(s) | 150, 347 |
| EcoRI | GAATTC | 1 cut(s) | 1360 |
| EcoRII | CCWGG | 1 cut(s) | 723 |
| Esp3I | CGTCTC | 1 cut(s) | 11 |
| FaeI | CATG | 3 cut(s) | 820, 1205, 1294 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 380, 412 |
| FaqI | GGGAC | 1 cut(s) | 155 |
| FatI | CATG | 3 cut(s) | 816, 1201, 1290 |
| FauI | CCCGC | 3 cut(s) | 145, 153, 260 |
| Fnu4HI | GCNGC | 2 cut(s) | 159, 729 |
| FokI | GGATG | 2 cut(s) | 521, 1079 |
| Fsp4HI | GCNGC | 2 cut(s) | 159, 729 |
| FspBI | CTAG | 6 cut(s) | 453, 882, 1062, 1151, 1299, 1331 |
| GluI | GCNGC | 2 cut(s) | 159, 729 |
| HaeIII | GGCC | 2 cut(s) | 216, 769 |
| HapII | CCGG | 2 cut(s) | 213, 243 |
| HgaI | GACGC | 1 cut(s) | 94 |
| Hin1II | CATG | 3 cut(s) | 820, 1205, 1294 |
| HindIII | AAGCTT | 1 cut(s) | 774 |
| HinfI | GANTC | 8 cut(s) | 80, 153, 284, 589, 751, 1049, 1146, 1165 |
| HpaII | CCGG | 2 cut(s) | 213, 243 |
| HphI | GGTGA | 5 cut(s) | 364, 503, 542, 920, 1315 |
| Hpy166II | GTNNAC | 1 cut(s) | 688 |
| Hpy188I | TCNGA | 2 cut(s) | 190, 594 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 281, 413, 553, 817, 1211 |
| Hpy8I | GTNNAC | 1 cut(s) | 688 |
| Hpy99I | CGWCG | 4 cut(s) | 110, 323, 331, 341 |
| HpyAV | CCTTC | 2 cut(s) | 67, 1305 |
| HpyCH4III | ACNGT | 2 cut(s) | 524, 1316 |
| HpyCH4IV | ACGT | 2 cut(s) | 326, 993 |
| HpyCH4V | TGCA | 1 cut(s) | 688 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 243, 252, 1291 |
| HpyF3I | CTNAG | 4 cut(s) | 233, 719, 872, 1020 |
| HpySE526I | ACGT | 2 cut(s) | 326, 993 |
| Hsp92II | CATG | 3 cut(s) | 820, 1205, 1294 |
| Kzo9I | GATC | 3 cut(s) | 258, 1124, 1374 |
| LmnI | GCTCC | 3 cut(s) | 242, 736, 1084 |
| Lsp1109I | GCAGC | 1 cut(s) | 715 |
| LweI | GCATC | 3 cut(s) | 255, 1048, 1289 |
| MaeI | CTAG | 6 cut(s) | 453, 882, 1062, 1151, 1299, 1331 |
| MaeII | ACGT | 2 cut(s) | 326, 993 |
| MaeIII | GTNAC | 2 cut(s) | 431, 989 |
| MalI | GATC | 3 cut(s) | 260, 1126, 1376 |
| MboI | GATC | 3 cut(s) | 258, 1124, 1374 |
| MboII | GAAGA | 4 cut(s) | 361, 449, 553, 914 |
| MfeI | CAATTG | 1 cut(s) | 827 |
| MflI | RGATCY | 1 cut(s) | 1374 |
| MhlI | GDGCHC | 2 cut(s) | 690, 915 |
| MluCI | AATT | 9 cut(s) | 442, 583, 645, 827, 944, 1074, 1128, 1258, 1360 |
| MlyI | GAGTC | 3 cut(s) | 74, 162, 278 |
| MmeI | TCCRAC | 3 cut(s) | 154, 213, 910 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1316 |
| MseI | TTAA | 4 cut(s) | 399, 570, 1014, 1221 |
| MspI | CCGG | 2 cut(s) | 213, 243 |
| MspR9I | CCNGG | 2 cut(s) | 243, 725 |
| MunI | CAATTG | 1 cut(s) | 827 |
| Mva1269I | GAATGC | 2 cut(s) | 408, 582 |
| MvaI | CCWGG | 1 cut(s) | 725 |
| MvnI | CGCG | 1 cut(s) | 105 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 243, 252, 1291 |
| NciI | CCSGG | 1 cut(s) | 243 |
| NdeII | GATC | 3 cut(s) | 258, 1124, 1374 |
| NlaIII | CATG | 3 cut(s) | 820, 1205, 1294 |
| NlaIV | GGNNCC | 2 cut(s) | 702, 967 |
| NmuCI | GTSAC | 1 cut(s) | 989 |
| NspV | TTCGAA | 3 cut(s) | 27, 539, 754 |
| PagI | TCATGA | 1 cut(s) | 816 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 114 |
| PctI | GAATGC | 2 cut(s) | 408, 582 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1316 |
| PfeI | GAWTC | 5 cut(s) | 589, 751, 1049, 1146, 1165 |
| PflFI | GACNNNGTC | 1 cut(s) | 341 |
| PkrI | GCNGC | 2 cut(s) | 160, 730 |
| PleI | GAGTC | 3 cut(s) | 74, 161, 278 |
| PpsI | GAGTC | 3 cut(s) | 74, 161, 278 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1196 |
| Psp6I | CCWGG | 1 cut(s) | 723 |
| PspGI | CCWGG | 1 cut(s) | 723 |
| PspN4I | GGNNCC | 2 cut(s) | 702, 967 |
| PspPI | GGNCC | 1 cut(s) | 1198 |
| PsuI | RGATCY | 1 cut(s) | 1374 |
| PsyI | GACNNNGTC | 1 cut(s) | 341 |
| RsaI | GTAC | 1 cut(s) | 1232 |
| RsaNI | GTAC | 1 cut(s) | 1231 |
| SaqAI | TTAA | 4 cut(s) | 399, 570, 1014, 1221 |
| SatI | GCNGC | 2 cut(s) | 159, 729 |
| Sau3AI | GATC | 3 cut(s) | 258, 1124, 1374 |
| Sau96I | GGNCC | 1 cut(s) | 1198 |
| SchI | GAGTC | 3 cut(s) | 74, 162, 278 |
| ScrFI | CCNGG | 2 cut(s) | 243, 725 |
| SduI | GDGCHC | 2 cut(s) | 690, 915 |
| SfaNI | GCATC | 3 cut(s) | 255, 1048, 1289 |
| SfuI | TTCGAA | 3 cut(s) | 27, 539, 754 |
| SinI | GGWCC | 1 cut(s) | 1198 |
| Sse9I | AATT | 9 cut(s) | 442, 583, 645, 827, 944, 1074, 1128, 1258, 1360 |
| SsiI | CCGC | 9 cut(s) | 103, 138, 146, 159, 181, 253, 301, 886, 1082 |
| SspMI | CTAG | 6 cut(s) | 453, 882, 1062, 1151, 1299, 1331 |
| StyD4I | CCNGG | 2 cut(s) | 241, 723 |
| TaaI | ACNGT | 2 cut(s) | 524, 1316 |
| TaiI | ACGT | 2 cut(s) | 329, 996 |
| TaqI | TCGA | 7 cut(s) | 12, 27, 117, 539, 669, 754, 1210 |
| TasI | AATT | 9 cut(s) | 442, 583, 645, 827, 944, 1074, 1128, 1258, 1360 |
| TauI | GCSGC | 1 cut(s) | 161 |
| TfiI | GAWTC | 5 cut(s) | 589, 751, 1049, 1146, 1165 |
| Tru1I | TTAA | 4 cut(s) | 399, 570, 1014, 1221 |
| Tru9I | TTAA | 4 cut(s) | 399, 570, 1014, 1221 |
| TseFI | GTSAC | 1 cut(s) | 989 |
| TseI | GCWGC | 1 cut(s) | 728 |
| Tsp45I | GTSAC | 1 cut(s) | 989 |
| TspDTI | ATGAA | 1 cut(s) | 805 |
| TspGWI | ACGGA | 3 cut(s) | 611, 759, 763 |
| Tth111I | GACNNNGTC | 1 cut(s) | 341 |
| VneI | GTGCAC | 1 cut(s) | 686 |
| VpaK11BI | GGWCC | 1 cut(s) | 1198 |
| XapI | RAATTY | 3 cut(s) | 944, 1258, 1360 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1316 |
| XspI | CTAG | 6 cut(s) | 453, 882, 1062, 1151, 1299, 1331 |