Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 41 - 125 | 1.2e-16 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 183 |
| AarI | CACCTGC | 1 cut(s) | 227 |
| Acc36I | ACCTGC | 1 cut(s) | 227 |
| AccB1I | GGYRCC | 1 cut(s) | 391 |
| AccII | CGCG | 2 cut(s) | 30, 80 |
| AciI | CCGC | 4 cut(s) | 10, 14, 64, 389 |
| AcoI | YGGCCR | 2 cut(s) | 11, 310 |
| AcyI | GRCGYC | 1 cut(s) | 99 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 274 |
| AgsI | TTSAA | 1 cut(s) | 110 |
| AluBI | AGCT | 1 cut(s) | 218 |
| AluI | AGCT | 1 cut(s) | 218 |
| Alw26I | GTCTC | 2 cut(s) | 37, 117 |
| AoxI | GGCC | 3 cut(s) | 11, 61, 310 |
| ApeKI | GCWGC | 2 cut(s) | 25, 262 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 204 |
| AspLEI | GCGC | 2 cut(s) | 30, 82 |
| AspS9I | GGNCC | 1 cut(s) | 42 |
| AsuC2I | CCSGG | 1 cut(s) | 6 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaII | GGWCC | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 1 cut(s) | 307 |
| BanI | GGYRCC | 1 cut(s) | 391 |
| BanII | GRGCYC | 1 cut(s) | 91 |
| BbvI | GCAGC | 2 cut(s) | 37, 249 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 71, 105 |
| BcnI | CCSGG | 1 cut(s) | 6 |
| BcoDI | GTCTC | 2 cut(s) | 37, 117 |
| BfaI | CTAG | 2 cut(s) | 353, 386 |
| BfuAI | ACCTGC | 1 cut(s) | 227 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 10 |
| BisI | GCNGC | 5 cut(s) | 11, 14, 26, 64, 263 |
| BlsI | GCNGC | 5 cut(s) | 12, 15, 27, 65, 264 |
| Bme1390I | CCNGG | 1 cut(s) | 6 |
| Bme18I | GGWCC | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 1 cut(s) | 42 |
| BmiI | GGNNCC | 1 cut(s) | 393 |
| BmrFI | CCNGG | 1 cut(s) | 6 |
| BpuMI | CCSGG | 1 cut(s) | 6 |
| BsaHI | GRCGYC | 1 cut(s) | 99 |
| BsaI | GGTCTC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 2 cut(s) | 5, 94 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 274 |
| Bse118I | RCCGGY | 1 cut(s) | 44 |
| Bse1I | ACTGG | 1 cut(s) | 121 |
| BseDI | CCNNGG | 2 cut(s) | 5, 94 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 274 |
| BseMII | CTCAG | 2 cut(s) | 144, 366 |
| BseNI | ACTGG | 1 cut(s) | 121 |
| BseSI | GKGCMC | 1 cut(s) | 307 |
| BseX3I | CGGCCG | 1 cut(s) | 11 |
| BseXI | GCAGC | 2 cut(s) | 37, 249 |
| BseYI | CCCAGC | 1 cut(s) | 218 |
| BsgI | GTGCAG | 2 cut(s) | 248, 255 |
| Bsh1236I | CGCG | 2 cut(s) | 30, 80 |
| Bsh1285I | CGRYCG | 1 cut(s) | 14 |
| BshFI | GGCC | 3 cut(s) | 13, 63, 312 |
| BshNI | GGYRCC | 1 cut(s) | 391 |
| BsiEI | CGRYCG | 1 cut(s) | 14 |
| BsiSI | CCGG | 3 cut(s) | 5, 45, 313 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 274 |
| BsmAI | GTCTC | 2 cut(s) | 37, 117 |
| BsmBI | CGTCTC | 1 cut(s) | 37 |
| BsmI | GAATGC | 1 cut(s) | 264 |
| BsnI | GGCC | 3 cut(s) | 13, 63, 312 |
| Bso31I | GGTCTC | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 2 cut(s) | 91, 307 |
| BspACI | CCGC | 4 cut(s) | 10, 14, 64, 389 |
| BspANI | GGCC | 3 cut(s) | 13, 63, 312 |
| BspCNI | CTCAG | 2 cut(s) | 145, 367 |
| BspFNI | CGCG | 2 cut(s) | 30, 80 |
| BspLI | GGNNCC | 1 cut(s) | 393 |
| BspMI | ACCTGC | 1 cut(s) | 227 |
| BspT107I | GGYRCC | 1 cut(s) | 391 |
| BspTNI | GGTCTC | 1 cut(s) | 117 |
| BsrFI | RCCGGY | 1 cut(s) | 44 |
| BsrI | ACTGG | 1 cut(s) | 121 |
| BssAI | RCCGGY | 1 cut(s) | 44 |
| BssECI | CCNNGG | 2 cut(s) | 5, 94 |
| BssNI | GRCGYC | 1 cut(s) | 99 |
| Bst6I | CTCTTC | 1 cut(s) | 115 |
| BstACI | GRCGYC | 1 cut(s) | 99 |
| BstC8I | GCNNGC | 1 cut(s) | 91 |
| BstDEI | CTNAG | 2 cut(s) | 153, 375 |
| BstFNI | CGCG | 2 cut(s) | 30, 80 |
| BstHHI | GCGC | 2 cut(s) | 30, 82 |
| BstMAI | GTCTC | 2 cut(s) | 37, 117 |
| BstMCI | CGRYCG | 1 cut(s) | 14 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 22, 86 |
| BstSCI | CCNGG | 1 cut(s) | 4 |
| BstSLI | GKGCMC | 1 cut(s) | 307 |
| BstUI | CGCG | 2 cut(s) | 30, 80 |
| BstV1I | GCAGC | 2 cut(s) | 37, 249 |
| BstZI | CGGCCG | 1 cut(s) | 11 |
| BsuRI | GGCC | 3 cut(s) | 13, 63, 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 114 |
| BveI | ACCTGC | 1 cut(s) | 227 |
| Cac8I | GCNNGC | 1 cut(s) | 91 |
| CciNI | GCGGCCGC | 1 cut(s) | 11 |
| CfoI | GCGC | 2 cut(s) | 30, 82 |
| Cfr10I | RCCGGY | 1 cut(s) | 44 |
| Cfr13I | GGNCC | 1 cut(s) | 42 |
| CseI | GACGC | 2 cut(s) | 19, 88 |
| CviJI | RGCY | 9 cut(s) | 13, 63, 89, 136, 151, 218, 312, 352, 379 |
| CviKI_1 | RGCY | 9 cut(s) | 13, 63, 89, 136, 151, 218, 312, 352, 379 |
| DdeI | CTNAG | 2 cut(s) | 153, 375 |
| EaeI | YGGCCR | 2 cut(s) | 11, 310 |
| EagI | CGGCCG | 1 cut(s) | 11 |
| Eam1104I | CTCTTC | 1 cut(s) | 115 |
| EarI | CTCTTC | 1 cut(s) | 115 |
| EclXI | CGGCCG | 1 cut(s) | 11 |
| Eco24I | GRGCYC | 1 cut(s) | 91 |
| Eco31I | GGTCTC | 1 cut(s) | 117 |
| Eco47I | GGWCC | 1 cut(s) | 42 |
| Eco52I | CGGCCG | 1 cut(s) | 11 |
| EcoT38I | GRGCYC | 1 cut(s) | 91 |
| Esp3I | CGTCTC | 1 cut(s) | 37 |
| FaiI | YATR | 4 cut(s) | 164, 183, 198, 255 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 14, 26, 64, 263 |
| FriOI | GRGCYC | 1 cut(s) | 91 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 14, 26, 64, 263 |
| FspBI | CTAG | 2 cut(s) | 353, 386 |
| GlaI | GCGC | 2 cut(s) | 29, 81 |
| GluI | GCNGC | 5 cut(s) | 11, 14, 26, 64, 263 |
| GsaI | CCCAGC | 1 cut(s) | 222 |
| HaeIII | GGCC | 3 cut(s) | 13, 63, 312 |
| HapII | CCGG | 3 cut(s) | 5, 45, 313 |
| HgaI | GACGC | 2 cut(s) | 19, 88 |
| HhaI | GCGC | 2 cut(s) | 30, 82 |
| Hin1I | GRCGYC | 1 cut(s) | 99 |
| Hin6I | GCGC | 2 cut(s) | 28, 80 |
| HinP1I | GCGC | 2 cut(s) | 28, 80 |
| HinfI | GANTC | 4 cut(s) | 140, 205, 329, 357 |
| HpaII | CCGG | 3 cut(s) | 5, 45, 313 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 1 cut(s) | 376 |
| Hpy99I | CGWCG | 1 cut(s) | 104 |
| HpyCH4V | TGCA | 2 cut(s) | 236, 265 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 22, 86 |
| HpyF3I | CTNAG | 2 cut(s) | 153, 375 |
| Hsp92I | GRCGYC | 1 cut(s) | 99 |
| HspAI | GCGC | 2 cut(s) | 28, 80 |
| LmnI | GCTCC | 1 cut(s) | 215 |
| Lsp1109I | GCAGC | 2 cut(s) | 37, 249 |
| MaeI | CTAG | 2 cut(s) | 353, 386 |
| MaeIII | GTNAC | 1 cut(s) | 319 |
| MboII | GAAGA | 2 cut(s) | 132, 237 |
| MhlI | GDGCHC | 2 cut(s) | 91, 307 |
| MluCI | AATT | 5 cut(s) | 54, 174, 200, 293, 337 |
| MnlI | CCTC | 4 cut(s) | 43, 77, 104, 150 |
| MroXI | GAANNNNTTC | 1 cut(s) | 204 |
| MseI | TTAA | 1 cut(s) | 147 |
| MspI | CCGG | 3 cut(s) | 5, 45, 313 |
| MspR9I | CCNGG | 1 cut(s) | 6 |
| Mva1269I | GAATGC | 1 cut(s) | 264 |
| MvnI | CGCG | 2 cut(s) | 30, 80 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 22, 86 |
| NciI | CCSGG | 1 cut(s) | 6 |
| NlaIV | GGNNCC | 1 cut(s) | 393 |
| NmeAIII | GCCGAG | 1 cut(s) | 75 |
| NotI | GCGGCCGC | 1 cut(s) | 11 |
| PaqCI | CACCTGC | 1 cut(s) | 227 |
| PctI | GAATGC | 1 cut(s) | 264 |
| PdmI | GAANNNNTTC | 1 cut(s) | 204 |
| PfeI | GAWTC | 4 cut(s) | 140, 205, 329, 357 |
| PkrI | GCNGC | 5 cut(s) | 12, 15, 27, 65, 264 |
| PsiI | TTATAA | 1 cut(s) | 183 |
| PspFI | CCCAGC | 1 cut(s) | 218 |
| PspN4I | GGNNCC | 1 cut(s) | 393 |
| PspPI | GGNCC | 1 cut(s) | 42 |
| SaqAI | TTAA | 1 cut(s) | 147 |
| SatI | GCNGC | 5 cut(s) | 11, 14, 26, 64, 263 |
| Sau96I | GGNCC | 1 cut(s) | 42 |
| ScrFI | CCNGG | 1 cut(s) | 6 |
| SduI | GDGCHC | 2 cut(s) | 91, 307 |
| SetI | ASST | 5 cut(s) | 161, 190, 220, 241, 270 |
| SinI | GGWCC | 1 cut(s) | 42 |
| Sse9I | AATT | 5 cut(s) | 54, 174, 200, 293, 337 |
| SsiI | CCGC | 4 cut(s) | 10, 14, 64, 389 |
| SspMI | CTAG | 2 cut(s) | 353, 386 |
| StyD4I | CCNGG | 1 cut(s) | 4 |
| TaqI | TCGA | 1 cut(s) | 297 |
| TasI | AATT | 5 cut(s) | 54, 174, 200, 293, 337 |
| TauI | GCSGC | 3 cut(s) | 13, 16, 66 |
| TfiI | GAWTC | 4 cut(s) | 140, 205, 329, 357 |
| Tru1I | TTAA | 1 cut(s) | 147 |
| Tru9I | TTAA | 1 cut(s) | 147 |
| TscAI | CASTG | 1 cut(s) | 121 |
| TseI | GCWGC | 2 cut(s) | 25, 262 |
| TspDTI | ATGAA | 4 cut(s) | 132, 151, 213, 350 |
| TspRI | CASTG | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 1 cut(s) | 42 |
| XmnI | GAANNNNTTC | 1 cut(s) | 204 |
| XspI | CTAG | 2 cut(s) | 353, 386 |