Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 600 |
| AclI | AACGTT | 1 cut(s) | 626 |
| AclWI | GGATC | 1 cut(s) | 569 |
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AcuI | CTGAAG | 1 cut(s) | 57 |
| AfaI | GTAC | 1 cut(s) | 520 |
| AgsI | TTSAA | 2 cut(s) | 115, 242 |
| AluBI | AGCT | 6 cut(s) | 305, 341, 373, 554, 605, 638 |
| AluI | AGCT | 6 cut(s) | 305, 341, 373, 554, 605, 638 |
| Alw21I | GWGCWC | 1 cut(s) | 434 |
| Alw26I | GTCTC | 3 cut(s) | 50, 161, 186 |
| AlwI | GGATC | 1 cut(s) | 569 |
| AoxI | GGCC | 2 cut(s) | 217, 261 |
| AsuNHI | GCTAGC | 1 cut(s) | 541 |
| BalI | TGGCCA | 1 cut(s) | 263 |
| Bbv12I | GWGCWC | 1 cut(s) | 434 |
| BccI | CCATC | 1 cut(s) | 664 |
| BcoDI | GTCTC | 3 cut(s) | 50, 161, 186 |
| BfaI | CTAG | 1 cut(s) | 542 |
| BlpI | GCTNAGC | 1 cut(s) | 639 |
| BmiI | GGNNCC | 1 cut(s) | 509 |
| BmsI | GCATC | 3 cut(s) | 126, 460, 528 |
| BmtI | GCTAGC | 1 cut(s) | 545 |
| Bpu10I | CCTNAGC | 1 cut(s) | 502 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 639 |
| BpuEI | CTTGAG | 1 cut(s) | 321 |
| BsaBI | GATNNNNATC | 1 cut(s) | 33 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 392, 422 |
| Bse1I | ACTGG | 1 cut(s) | 153 |
| Bse8I | GATNNNNATC | 1 cut(s) | 33 |
| BseGI | GGATG | 3 cut(s) | 52, 141, 475 |
| BseJI | GATNNNNATC | 1 cut(s) | 33 |
| BseMII | CTCAG | 2 cut(s) | 120, 630 |
| BseNI | ACTGG | 1 cut(s) | 153 |
| BseRI | GAGGAG | 1 cut(s) | 158 |
| BseYI | CCCAGC | 1 cut(s) | 305 |
| BshFI | GGCC | 2 cut(s) | 219, 263 |
| BsiHKAI | GWGCWC | 1 cut(s) | 434 |
| BsiSI | CCGG | 1 cut(s) | 220 |
| BsmAI | GTCTC | 3 cut(s) | 50, 161, 186 |
| BsnI | GGCC | 2 cut(s) | 219, 263 |
| Bsp1286I | GDGCHC | 1 cut(s) | 434 |
| Bsp143I | GATC | 1 cut(s) | 561 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 639 |
| BspANI | GGCC | 2 cut(s) | 219, 263 |
| BspCNI | CTCAG | 2 cut(s) | 121, 631 |
| BspHI | TCATGA | 1 cut(s) | 184 |
| BspLI | GGNNCC | 1 cut(s) | 509 |
| BspOI | GCTAGC | 1 cut(s) | 545 |
| BspPI | GGATC | 1 cut(s) | 569 |
| BsrI | ACTGG | 1 cut(s) | 153 |
| BssMI | GATC | 1 cut(s) | 561 |
| Bst4CI | ACNGT | 1 cut(s) | 81 |
| BstC8I | GCNNGC | 1 cut(s) | 543 |
| BstDEI | CTNAG | 5 cut(s) | 129, 502, 606, 639, 666 |
| BstF5I | GGATG | 3 cut(s) | 52, 141, 475 |
| BstKTI | GATC | 1 cut(s) | 564 |
| BstMAI | GTCTC | 3 cut(s) | 50, 161, 186 |
| BstMBI | GATC | 1 cut(s) | 561 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 542, 551 |
| BstNSI | RCATGY | 1 cut(s) | 650 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 160 |
| BsuRI | GGCC | 2 cut(s) | 219, 263 |
| BtgZI | GCGATG | 1 cut(s) | 551 |
| BtsCI | GGATG | 3 cut(s) | 52, 141, 475 |
| Cac8I | GCNNGC | 1 cut(s) | 543 |
| CciI | TCATGA | 1 cut(s) | 184 |
| Csp6I | GTAC | 1 cut(s) | 519 |
| CviAII | CATG | 3 cut(s) | 185, 465, 647 |
| CviQI | GTAC | 1 cut(s) | 519 |
| DdeI | CTNAG | 5 cut(s) | 129, 502, 606, 639, 666 |
| DpnI | GATC | 1 cut(s) | 563 |
| DpnII | GATC | 1 cut(s) | 561 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| Eco57I | CTGAAG | 1 cut(s) | 57 |
| FaeI | CATG | 3 cut(s) | 188, 468, 650 |
| FatI | CATG | 3 cut(s) | 184, 464, 646 |
| FokI | GGATG | 3 cut(s) | 59, 148, 482 |
| FspBI | CTAG | 1 cut(s) | 542 |
| GsaI | CCCAGC | 1 cut(s) | 309 |
| HaeIII | GGCC | 2 cut(s) | 219, 263 |
| HapII | CCGG | 1 cut(s) | 220 |
| Hin1II | CATG | 3 cut(s) | 188, 468, 650 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| HindIII | AAGCTT | 2 cut(s) | 339, 552 |
| HinfI | GANTC | 2 cut(s) | 40, 179 |
| HpaI | GTTAAC | 1 cut(s) | 88 |
| HpaII | CCGG | 1 cut(s) | 220 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 4 cut(s) | 39, 130, 512, 594 |
| Hpy188III | TCNNGA | 4 cut(s) | 44, 75, 185, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| HpyAV | CCTTC | 4 cut(s) | 248, 304, 488, 585 |
| HpyCH4III | ACNGT | 1 cut(s) | 81 |
| HpyCH4IV | ACGT | 1 cut(s) | 626 |
| HpyCH4V | TGCA | 2 cut(s) | 139, 413 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 542, 551 |
| HpyF3I | CTNAG | 5 cut(s) | 129, 502, 606, 639, 666 |
| HpySE526I | ACGT | 1 cut(s) | 626 |
| Hsp92II | CATG | 3 cut(s) | 188, 468, 650 |
| KspAI | GTTAAC | 1 cut(s) | 88 |
| Kzo9I | GATC | 1 cut(s) | 561 |
| LmnI | GCTCC | 3 cut(s) | 302, 400, 429 |
| LpnPI | CCDG | 6 cut(s) | 29, 60, 125, 166, 233, 291 |
| LweI | GCATC | 3 cut(s) | 126, 460, 528 |
| MaeI | CTAG | 1 cut(s) | 542 |
| MaeII | ACGT | 1 cut(s) | 626 |
| MaeIII | GTNAC | 1 cut(s) | 479 |
| MalI | GATC | 1 cut(s) | 563 |
| MboI | GATC | 1 cut(s) | 561 |
| MboII | GAAGA | 2 cut(s) | 38, 503 |
| MhlI | GDGCHC | 1 cut(s) | 434 |
| MlsI | TGGCCA | 1 cut(s) | 263 |
| MluCI | AATT | 5 cut(s) | 256, 277, 290, 321, 529 |
| MluNI | TGGCCA | 1 cut(s) | 263 |
| MlyI | GAGTC | 1 cut(s) | 188 |
| MmeI | TCCRAC | 1 cut(s) | 230 |
| MnlI | CCTC | 7 cut(s) | 28, 124, 136, 139, 385, 491, 552 |
| Mox20I | TGGCCA | 1 cut(s) | 263 |
| MscI | TGGCCA | 1 cut(s) | 263 |
| MseI | TTAA | 2 cut(s) | 87, 528 |
| Msp20I | TGGCCA | 1 cut(s) | 263 |
| MspA1I | CMGCKG | 1 cut(s) | 638 |
| MspI | CCGG | 1 cut(s) | 220 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 542, 551 |
| NdeII | GATC | 1 cut(s) | 561 |
| NheI | GCTAGC | 1 cut(s) | 541 |
| NlaIII | CATG | 3 cut(s) | 188, 468, 650 |
| NlaIV | GGNNCC | 1 cut(s) | 509 |
| NspI | RCATGY | 1 cut(s) | 650 |
| PagI | TCATGA | 1 cut(s) | 184 |
| PfeI | GAWTC | 1 cut(s) | 40 |
| PleI | GAGTC | 1 cut(s) | 187 |
| PpsI | GAGTC | 1 cut(s) | 187 |
| PsiI | TTATAA | 1 cut(s) | 600 |
| Psp1406I | AACGTT | 1 cut(s) | 626 |
| PspFI | CCCAGC | 1 cut(s) | 305 |
| PspN4I | GGNNCC | 1 cut(s) | 509 |
| PvuII | CAGCTG | 1 cut(s) | 638 |
| RsaI | GTAC | 1 cut(s) | 520 |
| RsaNI | GTAC | 1 cut(s) | 519 |
| SaqAI | TTAA | 2 cut(s) | 87, 528 |
| Sau3AI | GATC | 1 cut(s) | 561 |
| SchI | GAGTC | 1 cut(s) | 188 |
| SduI | GDGCHC | 1 cut(s) | 434 |
| SfaNI | GCATC | 3 cut(s) | 126, 460, 528 |
| SmlI | CTYRAG | 1 cut(s) | 336 |
| SmoI | CTYRAG | 1 cut(s) | 336 |
| Sse9I | AATT | 5 cut(s) | 256, 277, 290, 321, 529 |
| SspMI | CTAG | 1 cut(s) | 542 |
| TaaI | ACNGT | 1 cut(s) | 81 |
| TaiI | ACGT | 1 cut(s) | 629 |
| TasI | AATT | 5 cut(s) | 256, 277, 290, 321, 529 |
| TfiI | GAWTC | 1 cut(s) | 40 |
| Tru1I | TTAA | 2 cut(s) | 87, 528 |
| Tru9I | TTAA | 2 cut(s) | 87, 528 |
| TspDTI | ATGAA | 1 cut(s) | 567 |
| XceI | RCATGY | 1 cut(s) | 650 |
| XspI | CTAG | 1 cut(s) | 542 |