ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1373 |
| AatII | GACGTC | 1 cut(s) | 1281 |
| Acc16I | TGCGCA | 1 cut(s) | 644 |
| Acc36I | ACCTGC | 2 cut(s) | 562, 1079 |
| AccB1I | GGYRCC | 1 cut(s) | 829 |
| AciI | CCGC | 2 cut(s) | 825, 1209 |
| AclWI | GGATC | 1 cut(s) | 159 |
| AcsI | RAATTY | 2 cut(s) | 420, 484 |
| AcuI | CTGAAG | 3 cut(s) | 67, 536, 1293 |
| AcyI | GRCGYC | 1 cut(s) | 1278 |
| AfaI | GTAC | 1 cut(s) | 580 |
| AflII | CTTAAG | 1 cut(s) | 1403 |
| AgsI | TTSAA | 4 cut(s) | 481, 1001, 1133, 1448 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 667 |
| AjnI | CCWGG | 2 cut(s) | 21, 60 |
| AluBI | AGCT | 7 cut(s) | 122, 249, 539, 588, 1022, 1136, 1183 |
| AluI | AGCT | 7 cut(s) | 122, 249, 539, 588, 1022, 1136, 1183 |
| Alw21I | GWGCWC | 1 cut(s) | 385 |
| AlwI | GGATC | 1 cut(s) | 159 |
| Ama87I | CYCGRG | 1 cut(s) | 1315 |
| AoxI | GGCC | 1 cut(s) | 1394 |
| ApeKI | GCWGC | 1 cut(s) | 585 |
| ApoI | RAATTY | 2 cut(s) | 420, 484 |
| AspLEI | GCGC | 2 cut(s) | 255, 645 |
| AspS9I | GGNCC | 2 cut(s) | 967, 1346 |
| AsuNHI | GCTAGC | 2 cut(s) | 172, 1018 |
| AvaI | CYCGRG | 1 cut(s) | 1315 |
| AvaII | GGWCC | 2 cut(s) | 967, 1346 |
| BanI | GGYRCC | 1 cut(s) | 829 |
| BanII | GRGCYC | 2 cut(s) | 1316, 1363 |
| BbsI | GAAGAC | 4 cut(s) | 73, 669, 834, 1281 |
| Bbv12I | GWGCWC | 1 cut(s) | 385 |
| BbvI | GCAGC | 1 cut(s) | 597 |
| BccI | CCATC | 3 cut(s) | 26, 1208, 1373 |
| BceAI | ACGGC | 1 cut(s) | 216 |
| BciT130I | CCWGG | 2 cut(s) | 23, 62 |
| BclI | TGATCA | 1 cut(s) | 243 |
| BfaI | CTAG | 9 cut(s) | 167, 173, 473, 540, 699, 1019, 1065, 1301, 1350 |
| BfmI | CTRYAG | 1 cut(s) | 1160 |
| BfrI | CTTAAG | 1 cut(s) | 1403 |
| BfuAI | ACCTGC | 2 cut(s) | 562, 1079 |
| BisI | GCNGC | 2 cut(s) | 586, 1210 |
| BlsI | GCNGC | 2 cut(s) | 587, 1211 |
| Bme1390I | CCNGG | 2 cut(s) | 23, 62 |
| Bme18I | GGWCC | 2 cut(s) | 967, 1346 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 667 |
| BmeT110I | CYCGRG | 1 cut(s) | 1315 |
| BmgT120I | GGNCC | 2 cut(s) | 967, 1346 |
| BmiI | GGNNCC | 1 cut(s) | 831 |
| BmrFI | CCNGG | 2 cut(s) | 23, 62 |
| BmsI | GCATC | 4 cut(s) | 106, 742, 852, 1144 |
| BmtI | GCTAGC | 2 cut(s) | 176, 1022 |
| BpiI | GAAGAC | 4 cut(s) | 73, 669, 834, 1281 |
| BpmI | CTGGAG | 2 cut(s) | 83, 1122 |
| BpuEI | CTTGAG | 3 cut(s) | 286, 291, 820 |
| BsaBI | GATNNNNATC | 3 cut(s) | 369, 411, 1173 |
| BsaHI | GRCGYC | 1 cut(s) | 1278 |
| Bse118I | RCCGGY | 1 cut(s) | 1205 |
| Bse8I | GATNNNNATC | 3 cut(s) | 369, 411, 1173 |
| BseBI | CCWGG | 2 cut(s) | 23, 62 |
| BseGI | GGATG | 7 cut(s) | 18, 31, 97, 450, 721, 1159, 1384 |
| BseJI | GATNNNNATC | 3 cut(s) | 369, 411, 1173 |
| BseMII | CTCAG | 2 cut(s) | 752, 787 |
| BseXI | GCAGC | 1 cut(s) | 597 |
| BsgI | GTGCAG | 1 cut(s) | 158 |
| BshFI | GGCC | 1 cut(s) | 1396 |
| BshNI | GGYRCC | 1 cut(s) | 829 |
| BsiHKAI | GWGCWC | 1 cut(s) | 385 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1315 |
| BsiSI | CCGG | 1 cut(s) | 1206 |
| BslFI | GGGAC | 1 cut(s) | 1427 |
| BsmFI | GGGAC | 1 cut(s) | 1427 |
| BsnI | GGCC | 1 cut(s) | 1396 |
| BsoBI | CYCGRG | 1 cut(s) | 1315 |
| Bsp1286I | GDGCHC | 3 cut(s) | 385, 1316, 1363 |
| Bsp143I | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| BspACI | CCGC | 2 cut(s) | 825, 1209 |
| BspANI | GGCC | 1 cut(s) | 1396 |
| BspCNI | CTCAG | 2 cut(s) | 751, 786 |
| BspLI | GGNNCC | 1 cut(s) | 831 |
| BspMI | ACCTGC | 2 cut(s) | 562, 1079 |
| BspOI | GCTAGC | 2 cut(s) | 176, 1022 |
| BspPI | GGATC | 1 cut(s) | 159 |
| BspT107I | GGYRCC | 1 cut(s) | 829 |
| BspTI | CTTAAG | 1 cut(s) | 1403 |
| BsrFI | RCCGGY | 1 cut(s) | 1205 |
| BssAI | RCCGGY | 1 cut(s) | 1205 |
| BssMI | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| BssNI | GRCGYC | 1 cut(s) | 1278 |
| Bst2UI | CCWGG | 2 cut(s) | 23, 62 |
| Bst4CI | ACNGT | 2 cut(s) | 1164, 1259 |
| Bst6I | CTCTTC | 1 cut(s) | 957 |
| BstACI | GRCGYC | 1 cut(s) | 1278 |
| BstAFI | CTTAAG | 1 cut(s) | 1403 |
| BstC8I | GCNNGC | 8 cut(s) | 39, 174, 251, 513, 867, 1020, 1181, 1243 |
| BstDEI | CTNAG | 4 cut(s) | 738, 773, 858, 1391 |
| BstF5I | GGATG | 7 cut(s) | 18, 31, 97, 450, 721, 1159, 1384 |
| BstHHI | GCGC | 2 cut(s) | 255, 645 |
| BstKTI | GATC | 5 cut(s) | 154, 246, 650, 796, 891 |
| BstMBI | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 950, 1393 |
| BstNI | CCWGG | 2 cut(s) | 23, 62 |
| BstNSI | RCATGY | 1 cut(s) | 910 |
| BstSCI | CCNGG | 2 cut(s) | 21, 60 |
| BstSFI | CTRYAG | 1 cut(s) | 1160 |
| BstV1I | GCAGC | 1 cut(s) | 597 |
| BstV2I | GAAGAC | 4 cut(s) | 73, 669, 834, 1281 |
| BsuRI | GGCC | 1 cut(s) | 1396 |
| BtgZI | GCGATG | 1 cut(s) | 1227 |
| BtsCI | GGATG | 7 cut(s) | 18, 31, 97, 450, 721, 1159, 1384 |
| BtsI | GCAGTG | 3 cut(s) | 79, 146, 1252 |
| BtsIMutI | CAGTG | 3 cut(s) | 79, 146, 1252 |
| BveI | ACCTGC | 2 cut(s) | 562, 1079 |
| Cac8I | GCNNGC | 8 cut(s) | 39, 174, 251, 513, 867, 1020, 1181, 1243 |
| CfoI | GCGC | 2 cut(s) | 255, 645 |
| Cfr10I | RCCGGY | 1 cut(s) | 1205 |
| Cfr13I | GGNCC | 2 cut(s) | 967, 1346 |
| CseI | GACGC | 1 cut(s) | 1376 |
| Csp6I | GTAC | 1 cut(s) | 579 |
| CviAII | CATG | 7 cut(s) | 104, 155, 182, 491, 907, 1070, 1286 |
| CviQI | GTAC | 1 cut(s) | 579 |
| DdeI | CTNAG | 4 cut(s) | 738, 773, 858, 1391 |
| DpnI | GATC | 5 cut(s) | 153, 245, 649, 795, 890 |
| DpnII | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| DraI | TTTAAA | 1 cut(s) | 939 |
| DriI | GACNNNNNGTC | 1 cut(s) | 667 |
| Eam1104I | CTCTTC | 1 cut(s) | 957 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 667 |
| EarI | CTCTTC | 1 cut(s) | 957 |
| Eco147I | AGGCCT | 1 cut(s) | 1396 |
| Eco24I | GRGCYC | 2 cut(s) | 1316, 1363 |
| Eco32I | GATATC | 1 cut(s) | 164 |
| Eco47I | GGWCC | 2 cut(s) | 967, 1346 |
| Eco57I | CTGAAG | 3 cut(s) | 67, 536, 1293 |
| Eco88I | CYCGRG | 1 cut(s) | 1315 |
| EcoRII | CCWGG | 2 cut(s) | 21, 60 |
| EcoRV | GATATC | 1 cut(s) | 164 |
| EcoT38I | GRGCYC | 2 cut(s) | 1316, 1363 |
| FaeI | CATG | 7 cut(s) | 107, 158, 185, 494, 910, 1073, 1289 |
| FaqI | GGGAC | 1 cut(s) | 1427 |
| FatI | CATG | 7 cut(s) | 103, 154, 181, 490, 906, 1069, 1285 |
| FauI | CCCGC | 1 cut(s) | 818 |
| FauNDI | CATATG | 1 cut(s) | 1116 |
| FbaI | TGATCA | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 2 cut(s) | 586, 1210 |
| FokI | GGATG | 7 cut(s) | 5, 38, 84, 457, 728, 1166, 1391 |
| FriOI | GRGCYC | 2 cut(s) | 1316, 1363 |
| Fsp4HI | GCNGC | 2 cut(s) | 586, 1210 |
| FspBI | CTAG | 9 cut(s) | 167, 173, 473, 540, 699, 1019, 1065, 1301, 1350 |
| FspI | TGCGCA | 1 cut(s) | 644 |
| GlaI | GCGC | 2 cut(s) | 254, 644 |
| GluI | GCNGC | 2 cut(s) | 586, 1210 |
| GsuI | CTGGAG | 2 cut(s) | 83, 1122 |
| HaeIII | GGCC | 1 cut(s) | 1396 |
| HapII | CCGG | 1 cut(s) | 1206 |
| HgaI | GACGC | 1 cut(s) | 1376 |
| HhaI | GCGC | 2 cut(s) | 255, 645 |
| Hin1I | GRCGYC | 1 cut(s) | 1278 |
| Hin1II | CATG | 7 cut(s) | 107, 158, 185, 494, 910, 1073, 1289 |
| Hin6I | GCGC | 2 cut(s) | 253, 643 |
| HinP1I | GCGC | 2 cut(s) | 253, 643 |
| HindIII | AAGCTT | 1 cut(s) | 1181 |
| HinfI | GANTC | 8 cut(s) | 286, 407, 616, 668, 689, 1142, 1415, 1457 |
| HpaII | CCGG | 1 cut(s) | 1206 |
| Hpy166II | GTNNAC | 2 cut(s) | 563, 912 |
| Hpy188I | TCNGA | 2 cut(s) | 406, 694 |
| Hpy188III | TCNNGA | 5 cut(s) | 265, 481, 740, 1139, 1151 |
| Hpy8I | GTNNAC | 2 cut(s) | 563, 912 |
| Hpy99I | CGWCG | 1 cut(s) | 1283 |
| HpyAV | CCTTC | 2 cut(s) | 188, 1261 |
| HpyCH4III | ACNGT | 2 cut(s) | 1164, 1259 |
| HpyCH4IV | ACGT | 1 cut(s) | 1278 |
| HpyCH4V | TGCA | 7 cut(s) | 97, 139, 515, 724, 1030, 1173, 1241 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 950, 1393 |
| HpyF3I | CTNAG | 4 cut(s) | 738, 773, 858, 1391 |
| HpySE526I | ACGT | 1 cut(s) | 1278 |
| Hsp92I | GRCGYC | 1 cut(s) | 1278 |
| Hsp92II | CATG | 7 cut(s) | 107, 158, 185, 494, 910, 1073, 1289 |
| HspAI | GCGC | 2 cut(s) | 253, 643 |
| Ksp22I | TGATCA | 1 cut(s) | 243 |
| Kzo9I | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| LmnI | GCTCC | 1 cut(s) | 1141 |
| Lsp1109I | GCAGC | 1 cut(s) | 597 |
| LweI | GCATC | 4 cut(s) | 106, 742, 852, 1144 |
| MaeI | CTAG | 9 cut(s) | 167, 173, 473, 540, 699, 1019, 1065, 1301, 1350 |
| MaeII | ACGT | 1 cut(s) | 1278 |
| MaeIII | GTNAC | 4 cut(s) | 359, 659, 955, 1247 |
| MalI | GATC | 5 cut(s) | 153, 245, 649, 795, 890 |
| MboI | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| MboII | GAAGA | 7 cut(s) | 73, 669, 829, 834, 974, 1013, 1286 |
| MfeI | CAATTG | 1 cut(s) | 638 |
| MhlI | GDGCHC | 3 cut(s) | 385, 1316, 1363 |
| MlyI | GAGTC | 3 cut(s) | 677, 1151, 1409 |
| MmeI | TCCRAC | 4 cut(s) | 341, 686, 785, 864 |
| MseI | TTAA | 9 cut(s) | 57, 218, 294, 873, 923, 938, 1008, 1404, 1422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 102, 1115 |
| MspA1I | CMGCKG | 1 cut(s) | 249 |
| MspCI | CTTAAG | 1 cut(s) | 1403 |
| MspI | CCGG | 1 cut(s) | 1206 |
| MspR9I | CCNGG | 2 cut(s) | 23, 62 |
| MunI | CAATTG | 1 cut(s) | 638 |
| MvaI | CCWGG | 2 cut(s) | 23, 62 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 950, 1393 |
| NdeI | CATATG | 1 cut(s) | 1116 |
| NdeII | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| NheI | GCTAGC | 2 cut(s) | 172, 1018 |
| NlaIII | CATG | 7 cut(s) | 107, 158, 185, 494, 910, 1073, 1289 |
| NlaIV | GGNNCC | 1 cut(s) | 831 |
| NmuCI | GTSAC | 4 cut(s) | 359, 659, 955, 1247 |
| NsbI | TGCGCA | 1 cut(s) | 644 |
| NspI | RCATGY | 1 cut(s) | 910 |
| PceI | AGGCCT | 1 cut(s) | 1396 |
| PfeI | GAWTC | 5 cut(s) | 286, 407, 616, 689, 1457 |
| PflFI | GACNNNGTC | 1 cut(s) | 1350 |
| PfoI | TCCNGGA | 1 cut(s) | 21 |
| PkrI | GCNGC | 2 cut(s) | 587, 1211 |
| PleI | GAGTC | 3 cut(s) | 676, 1150, 1409 |
| PpsI | GAGTC | 3 cut(s) | 676, 1150, 1409 |
| PsiI | TTATAA | 1 cut(s) | 1373 |
| Psp6I | CCWGG | 2 cut(s) | 21, 60 |
| PspGI | CCWGG | 2 cut(s) | 21, 60 |
| PspN4I | GGNNCC | 1 cut(s) | 831 |
| PspPI | GGNCC | 2 cut(s) | 967, 1346 |
| PsyI | GACNNNGTC | 1 cut(s) | 1350 |
| PvuII | CAGCTG | 1 cut(s) | 249 |
| RsaI | GTAC | 1 cut(s) | 580 |
| RsaNI | GTAC | 1 cut(s) | 579 |
| RseI | CAYNNNNRTG | 2 cut(s) | 102, 1115 |
| SaqAI | TTAA | 9 cut(s) | 57, 218, 294, 873, 923, 938, 1008, 1404, 1422 |
| SatI | GCNGC | 2 cut(s) | 586, 1210 |
| Sau3AI | GATC | 5 cut(s) | 151, 243, 647, 793, 888 |
| Sau96I | GGNCC | 2 cut(s) | 967, 1346 |
| SchI | GAGTC | 3 cut(s) | 677, 1151, 1409 |
| ScrFI | CCNGG | 2 cut(s) | 23, 62 |
| SduI | GDGCHC | 3 cut(s) | 385, 1316, 1363 |
| SfaNI | GCATC | 4 cut(s) | 106, 742, 852, 1144 |
| SfcI | CTRYAG | 1 cut(s) | 1160 |
| SinI | GGWCC | 2 cut(s) | 967, 1346 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 102, 1115 |
| SmlI | CTYRAG | 5 cut(s) | 11, 265, 306, 799, 1403 |
| SmoI | CTYRAG | 5 cut(s) | 11, 265, 306, 799, 1403 |
| SseBI | AGGCCT | 1 cut(s) | 1396 |
| SsiI | CCGC | 2 cut(s) | 825, 1209 |
| SspMI | CTAG | 9 cut(s) | 167, 173, 473, 540, 699, 1019, 1065, 1301, 1350 |
| StuI | AGGCCT | 1 cut(s) | 1396 |
| StyD4I | CCNGG | 2 cut(s) | 21, 60 |
| TaaI | ACNGT | 2 cut(s) | 1164, 1259 |
| TaiI | ACGT | 1 cut(s) | 1281 |
| TaqI | TCGA | 1 cut(s) | 1281 |
| TauI | GCSGC | 1 cut(s) | 1212 |
| TfiI | GAWTC | 5 cut(s) | 286, 407, 616, 689, 1457 |
| Tru1I | TTAA | 9 cut(s) | 57, 218, 294, 873, 923, 938, 1008, 1404, 1422 |
| Tru9I | TTAA | 9 cut(s) | 57, 218, 294, 873, 923, 938, 1008, 1404, 1422 |
| TscAI | CASTG | 3 cut(s) | 79, 146, 1252 |
| TseFI | GTSAC | 4 cut(s) | 359, 659, 955, 1247 |
| TseI | GCWGC | 1 cut(s) | 585 |
| Tsp45I | GTSAC | 4 cut(s) | 359, 659, 955, 1247 |
| TspDTI | ATGAA | 7 cut(s) | 104, 170, 413, 479, 623, 1034, 1103 |
| TspGWI | ACGGA | 1 cut(s) | 457 |
| TspRI | CASTG | 3 cut(s) | 79, 146, 1252 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1350 |
| Vha464I | CTTAAG | 1 cut(s) | 1403 |
| VpaK11BI | GGWCC | 2 cut(s) | 967, 1346 |
| XapI | RAATTY | 2 cut(s) | 420, 484 |
| XceI | RCATGY | 1 cut(s) | 910 |
| XspI | CTAG | 9 cut(s) | 167, 173, 473, 540, 699, 1019, 1065, 1301, 1350 |
| ZraI | GACGTC | 1 cut(s) | 1279 |