Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 8 - 98 | 1.2e-08 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 276 |
| AccB1I | GGYRCC | 1 cut(s) | 14 |
| AfaI | GTAC | 3 cut(s) | 301, 333, 373 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 29, 154 |
| AluBI | AGCT | 3 cut(s) | 44, 217, 362 |
| AluI | AGCT | 3 cut(s) | 44, 217, 362 |
| AoxI | GGCC | 1 cut(s) | 31 |
| ApeKI | GCWGC | 2 cut(s) | 272, 287 |
| AspLEI | GCGC | 1 cut(s) | 277 |
| BanI | GGYRCC | 1 cut(s) | 14 |
| BbvI | GCAGC | 2 cut(s) | 259, 299 |
| BfaI | CTAG | 2 cut(s) | 185, 336 |
| BfmI | CTRYAG | 1 cut(s) | 78 |
| BisI | GCNGC | 2 cut(s) | 273, 288 |
| BlpI | GCTNAGC | 1 cut(s) | 45 |
| BlsI | GCNGC | 2 cut(s) | 274, 289 |
| BmcAI | AGTACT | 1 cut(s) | 301 |
| BmiI | GGNNCC | 1 cut(s) | 16 |
| BmsI | GCATC | 1 cut(s) | 118 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 45 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 29, 154 |
| Bse1I | ACTGG | 1 cut(s) | 123 |
| Bse3DI | GCAATG | 1 cut(s) | 271 |
| BseGI | GGATG | 1 cut(s) | 133 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 29, 154 |
| BseMI | GCAATG | 1 cut(s) | 271 |
| BseMII | CTCAG | 2 cut(s) | 36, 40 |
| BseNI | ACTGG | 1 cut(s) | 123 |
| BseXI | GCAGC | 2 cut(s) | 259, 299 |
| BshFI | GGCC | 1 cut(s) | 33 |
| BshNI | GGYRCC | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 29, 154 |
| BsmI | GAATGC | 1 cut(s) | 277 |
| BsnI | GGCC | 1 cut(s) | 33 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 45 |
| BspANI | GGCC | 1 cut(s) | 33 |
| BspCNI | CTCAG | 2 cut(s) | 37, 39 |
| BspLI | GGNNCC | 1 cut(s) | 16 |
| BspT107I | GGYRCC | 1 cut(s) | 14 |
| BsrDI | GCAATG | 1 cut(s) | 271 |
| BsrI | ACTGG | 1 cut(s) | 123 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 14, 293 |
| BstC8I | GCNNGC | 1 cut(s) | 63 |
| BstDEI | CTNAG | 2 cut(s) | 26, 45 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 27 |
| BstF5I | GGATG | 1 cut(s) | 133 |
| BstHHI | GCGC | 1 cut(s) | 277 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 293 |
| BstNSI | RCATGY | 2 cut(s) | 53, 372 |
| BstSFI | CTRYAG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 2 cut(s) | 259, 299 |
| BsuRI | GGCC | 1 cut(s) | 33 |
| BtsCI | GGATG | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 1 cut(s) | 63 |
| CfoI | GCGC | 1 cut(s) | 277 |
| Csp6I | GTAC | 3 cut(s) | 300, 332, 372 |
| CviAII | CATG | 2 cut(s) | 50, 369 |
| CviJI | RGCY | 6 cut(s) | 33, 44, 65, 77, 217, 362 |
| CviKI_1 | RGCY | 6 cut(s) | 33, 44, 65, 77, 217, 362 |
| CviQI | GTAC | 3 cut(s) | 300, 332, 372 |
| DdeI | CTNAG | 2 cut(s) | 26, 45 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 27 |
| FaeI | CATG | 2 cut(s) | 53, 372 |
| FatI | CATG | 2 cut(s) | 49, 368 |
| FauNDI | CATATG | 2 cut(s) | 135, 292 |
| Fnu4HI | GCNGC | 2 cut(s) | 273, 288 |
| FokI | GGATG | 1 cut(s) | 140 |
| Fsp4HI | GCNGC | 2 cut(s) | 273, 288 |
| FspBI | CTAG | 2 cut(s) | 185, 336 |
| FspI | TGCGCA | 1 cut(s) | 276 |
| GlaI | GCGC | 1 cut(s) | 276 |
| GluI | GCNGC | 2 cut(s) | 273, 288 |
| HaeIII | GGCC | 1 cut(s) | 33 |
| HhaI | GCGC | 1 cut(s) | 277 |
| Hin1II | CATG | 2 cut(s) | 53, 372 |
| Hin6I | GCGC | 1 cut(s) | 275 |
| HinP1I | GCGC | 1 cut(s) | 275 |
| HindIII | AAGCTT | 1 cut(s) | 215 |
| HinfI | GANTC | 1 cut(s) | 339 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| HpyAV | CCTTC | 1 cut(s) | 221 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 3 cut(s) | 131, 142, 296 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 293 |
| HpyF3I | CTNAG | 2 cut(s) | 26, 45 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Hsp92II | CATG | 2 cut(s) | 53, 372 |
| HspAI | GCGC | 1 cut(s) | 275 |
| LpnPI | CCDG | 2 cut(s) | 47, 104 |
| Lsp1109I | GCAGC | 2 cut(s) | 259, 299 |
| LweI | GCATC | 1 cut(s) | 118 |
| MaeI | CTAG | 2 cut(s) | 185, 336 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MboII | GAAGA | 1 cut(s) | 212 |
| MluCI | AATT | 1 cut(s) | 35 |
| MmeI | TCCRAC | 1 cut(s) | 215 |
| MnlI | CCTC | 3 cut(s) | 23, 33, 249 |
| MseI | TTAA | 1 cut(s) | 356 |
| MspA1I | CMGCKG | 2 cut(s) | 44, 362 |
| Mva1269I | GAATGC | 1 cut(s) | 277 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 293 |
| NdeI | CATATG | 2 cut(s) | 135, 292 |
| NlaIII | CATG | 2 cut(s) | 53, 372 |
| NlaIV | GGNNCC | 1 cut(s) | 16 |
| NsbI | TGCGCA | 1 cut(s) | 276 |
| NspI | RCATGY | 2 cut(s) | 53, 372 |
| PctI | GAATGC | 1 cut(s) | 277 |
| PfeI | GAWTC | 1 cut(s) | 339 |
| PkrI | GCNGC | 2 cut(s) | 274, 289 |
| PspN4I | GGNNCC | 1 cut(s) | 16 |
| PvuII | CAGCTG | 2 cut(s) | 44, 362 |
| RsaI | GTAC | 3 cut(s) | 301, 333, 373 |
| RsaNI | GTAC | 3 cut(s) | 300, 332, 372 |
| SaqAI | TTAA | 1 cut(s) | 356 |
| SatI | GCNGC | 2 cut(s) | 273, 288 |
| ScaI | AGTACT | 1 cut(s) | 301 |
| SetI | ASST | 6 cut(s) | 46, 166, 193, 219, 337, 364 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| SfcI | CTRYAG | 1 cut(s) | 78 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| Sse9I | AATT | 1 cut(s) | 35 |
| SspMI | CTAG | 2 cut(s) | 185, 336 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TasI | AATT | 1 cut(s) | 35 |
| TatI | WGTACW | 1 cut(s) | 299 |
| TfiI | GAWTC | 1 cut(s) | 339 |
| Tru1I | TTAA | 1 cut(s) | 356 |
| Tru9I | TTAA | 1 cut(s) | 356 |
| TseI | GCWGC | 2 cut(s) | 272, 287 |
| TspDTI | ATGAA | 3 cut(s) | 170, 213, 331 |
| TspGWI | ACGGA | 1 cut(s) | 140 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 27 |
| XceI | RCATGY | 2 cut(s) | 53, 372 |
| XspI | CTAG | 2 cut(s) | 185, 336 |
| ZrmI | AGTACT | 1 cut(s) | 301 |