Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 357 |
| AccBSI | CCGCTC | 1 cut(s) | 617 |
| AciI | CCGC | 3 cut(s) | 157, 507, 617 |
| AcsI | RAATTY | 1 cut(s) | 599 |
| AcuI | CTGAAG | 1 cut(s) | 575 |
| AfaI | GTAC | 2 cut(s) | 208, 364 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 153, 357, 453 |
| AgsI | TTSAA | 4 cut(s) | 72, 290, 605, 667 |
| AluBI | AGCT | 6 cut(s) | 21, 92, 254, 370, 442, 551 |
| AluI | AGCT | 6 cut(s) | 21, 92, 254, 370, 442, 551 |
| Alw26I | GTCTC | 2 cut(s) | 451, 488 |
| Ama87I | CYCGRG | 1 cut(s) | 183 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApeKI | GCWGC | 3 cut(s) | 18, 89, 254 |
| ApoI | RAATTY | 1 cut(s) | 599 |
| AsuC2I | CCSGG | 2 cut(s) | 184, 185 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| AvaI | CYCGRG | 1 cut(s) | 183 |
| AxyI | CCTNAGG | 1 cut(s) | 449 |
| BbvI | GCAGC | 3 cut(s) | 30, 101, 241 |
| BccI | CCATC | 1 cut(s) | 589 |
| BcnI | CCSGG | 2 cut(s) | 184, 185 |
| BcoDI | GTCTC | 2 cut(s) | 451, 488 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BglII | AGATCT | 1 cut(s) | 581 |
| BisI | GCNGC | 3 cut(s) | 19, 90, 255 |
| BlsI | GCNGC | 3 cut(s) | 20, 91, 256 |
| Bme1390I | CCNGG | 2 cut(s) | 184, 185 |
| BmeT110I | CYCGRG | 1 cut(s) | 183 |
| BmiI | GGNNCC | 1 cut(s) | 302 |
| BmrFI | CCNGG | 2 cut(s) | 184, 185 |
| BmsI | GCATC | 2 cut(s) | 379, 469 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 117, 149, 606, 638 |
| Bpu10I | CCTNAGC | 1 cut(s) | 305 |
| BpuEI | CTTGAG | 2 cut(s) | 205, 446 |
| BpuMI | CCSGG | 2 cut(s) | 184, 185 |
| BsaJI | CCNNGG | 1 cut(s) | 183 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 153, 357, 453 |
| Bse1I | ACTGG | 2 cut(s) | 107, 502 |
| Bse21I | CCTNAGG | 1 cut(s) | 449 |
| Bse3DI | GCAATG | 1 cut(s) | 555 |
| BseDI | CCNNGG | 1 cut(s) | 183 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 153, 357, 453 |
| BseMI | GCAATG | 1 cut(s) | 555 |
| BseMII | CTCAG | 2 cut(s) | 228, 440 |
| BseNI | ACTGG | 2 cut(s) | 107, 502 |
| BseRI | GAGGAG | 1 cut(s) | 55 |
| BseXI | GCAGC | 3 cut(s) | 30, 101, 241 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BsiHKCI | CYCGRG | 1 cut(s) | 183 |
| BsiSI | CCGG | 1 cut(s) | 184 |
| BslFI | GGGAC | 2 cut(s) | 549, 633 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 153, 357, 453 |
| BsmAI | GTCTC | 2 cut(s) | 451, 488 |
| BsmFI | GGGAC | 2 cut(s) | 549, 633 |
| BsnI | GGCC | 1 cut(s) | 62 |
| BsoBI | CYCGRG | 1 cut(s) | 183 |
| Bsp1407I | TGTACA | 1 cut(s) | 206 |
| Bsp143I | GATC | 1 cut(s) | 581 |
| BspACI | CCGC | 3 cut(s) | 157, 507, 617 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspCNI | CTCAG | 2 cut(s) | 227, 441 |
| BspHI | TCATGA | 1 cut(s) | 385 |
| BspLI | GGNNCC | 1 cut(s) | 302 |
| BspQI | GCTCTTC | 1 cut(s) | 594 |
| BsrBI | CCGCTC | 1 cut(s) | 617 |
| BsrDI | GCAATG | 1 cut(s) | 555 |
| BsrGI | TGTACA | 1 cut(s) | 206 |
| BsrI | ACTGG | 2 cut(s) | 107, 502 |
| BssECI | CCNNGG | 1 cut(s) | 183 |
| BssMI | GATC | 1 cut(s) | 581 |
| Bst4CI | ACNGT | 1 cut(s) | 539 |
| Bst6I | CTCTTC | 4 cut(s) | 73, 285, 407, 594 |
| BstAUI | TGTACA | 1 cut(s) | 206 |
| BstDEI | CTNAG | 4 cut(s) | 214, 305, 366, 449 |
| BstKTI | GATC | 1 cut(s) | 584 |
| BstMAI | GTCTC | 2 cut(s) | 451, 488 |
| BstMBI | GATC | 1 cut(s) | 581 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 557 |
| BstNSI | RCATGY | 1 cut(s) | 266 |
| BstSCI | CCNGG | 2 cut(s) | 182, 183 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstV1I | GCAGC | 3 cut(s) | 30, 101, 241 |
| BstX2I | RGATCY | 1 cut(s) | 581 |
| BstYI | RGATCY | 1 cut(s) | 581 |
| Bsu36I | CCTNAGG | 1 cut(s) | 449 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BtsIMutI | CAGTG | 2 cut(s) | 100, 471 |
| CciI | TCATGA | 1 cut(s) | 385 |
| Cfr9I | CCCGGG | 1 cut(s) | 183 |
| Csp6I | GTAC | 2 cut(s) | 207, 363 |
| CviAII | CATG | 4 cut(s) | 26, 263, 386, 575 |
| CviQI | GTAC | 2 cut(s) | 207, 363 |
| DdeI | CTNAG | 4 cut(s) | 214, 305, 366, 449 |
| DpnI | GATC | 1 cut(s) | 583 |
| DpnII | GATC | 1 cut(s) | 581 |
| DraI | TTTAAA | 1 cut(s) | 271 |
| Eam1104I | CTCTTC | 4 cut(s) | 73, 285, 407, 594 |
| EarI | CTCTTC | 4 cut(s) | 73, 285, 407, 594 |
| EciI | GGCGGA | 2 cut(s) | 172, 522 |
| Eco57I | CTGAAG | 1 cut(s) | 575 |
| Eco81I | CCTNAGG | 1 cut(s) | 449 |
| Eco88I | CYCGRG | 1 cut(s) | 183 |
| FaeI | CATG | 4 cut(s) | 29, 266, 389, 578 |
| FaiI | YATR | 8 cut(s) | 6, 27, 115, 264, 387, 576, 611, 649 |
| FaqI | GGGAC | 2 cut(s) | 549, 633 |
| FatI | CATG | 4 cut(s) | 25, 262, 385, 574 |
| FauI | CCCGC | 1 cut(s) | 610 |
| Fnu4HI | GCNGC | 3 cut(s) | 19, 90, 255 |
| Fsp4HI | GCNGC | 3 cut(s) | 19, 90, 255 |
| GluI | GCNGC | 3 cut(s) | 19, 90, 255 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| HapII | CCGG | 1 cut(s) | 184 |
| Hin1II | CATG | 4 cut(s) | 29, 266, 389, 578 |
| HinfI | GANTC | 3 cut(s) | 218, 459, 621 |
| HpaII | CCGG | 1 cut(s) | 184 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy166II | GTNNAC | 2 cut(s) | 98, 660 |
| Hpy188I | TCNGA | 2 cut(s) | 217, 594 |
| Hpy188III | TCNNGA | 5 cut(s) | 13, 72, 386, 403, 643 |
| Hpy8I | GTNNAC | 2 cut(s) | 98, 660 |
| HpyAV | CCTTC | 3 cut(s) | 100, 112, 157 |
| HpyCH4III | ACNGT | 1 cut(s) | 539 |
| HpyCH4V | TGCA | 3 cut(s) | 237, 262, 376 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 557 |
| HpyF3I | CTNAG | 4 cut(s) | 214, 305, 366, 449 |
| Hsp92II | CATG | 4 cut(s) | 29, 266, 389, 578 |
| Kzo9I | GATC | 1 cut(s) | 581 |
| LguI | GCTCTTC | 1 cut(s) | 594 |
| LmnI | GCTCC | 1 cut(s) | 300 |
| Lsp1109I | GCAGC | 3 cut(s) | 30, 101, 241 |
| LweI | GCATC | 2 cut(s) | 379, 469 |
| MalI | GATC | 1 cut(s) | 583 |
| MbiI | CCGCTC | 1 cut(s) | 617 |
| MboI | GATC | 1 cut(s) | 581 |
| MboII | GAAGA | 4 cut(s) | 60, 302, 424, 581 |
| MflI | RGATCY | 1 cut(s) | 581 |
| MluCI | AATT | 5 cut(s) | 55, 241, 317, 510, 599 |
| MlyI | GAGTC | 3 cut(s) | 212, 453, 615 |
| MnlI | CCTC | 7 cut(s) | 73, 76, 141, 321, 408, 414, 444 |
| MseI | TTAA | 5 cut(s) | 270, 315, 320, 345, 467 |
| MspA1I | CMGCKG | 1 cut(s) | 92 |
| MspI | CCGG | 1 cut(s) | 184 |
| MspR9I | CCNGG | 2 cut(s) | 184, 185 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 557 |
| NciI | CCSGG | 2 cut(s) | 184, 185 |
| NdeII | GATC | 1 cut(s) | 581 |
| NlaIII | CATG | 4 cut(s) | 29, 266, 389, 578 |
| NlaIV | GGNNCC | 1 cut(s) | 302 |
| NspI | RCATGY | 1 cut(s) | 266 |
| PagI | TCATGA | 1 cut(s) | 385 |
| PciSI | GCTCTTC | 1 cut(s) | 594 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 543 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 357 |
| PkrI | GCNGC | 3 cut(s) | 20, 91, 256 |
| PleI | GAGTC | 3 cut(s) | 212, 453, 615 |
| PpsI | GAGTC | 3 cut(s) | 212, 453, 615 |
| PspN4I | GGNNCC | 1 cut(s) | 302 |
| PsuI | RGATCY | 1 cut(s) | 581 |
| PvuII | CAGCTG | 1 cut(s) | 92 |
| RsaI | GTAC | 2 cut(s) | 208, 364 |
| RsaNI | GTAC | 2 cut(s) | 207, 363 |
| SapI | GCTCTTC | 1 cut(s) | 594 |
| SaqAI | TTAA | 5 cut(s) | 270, 315, 320, 345, 467 |
| SatI | GCNGC | 3 cut(s) | 19, 90, 255 |
| Sau3AI | GATC | 1 cut(s) | 581 |
| SchI | GAGTC | 3 cut(s) | 212, 453, 615 |
| ScrFI | CCNGG | 2 cut(s) | 184, 185 |
| SetI | ASST | 8 cut(s) | 23, 94, 111, 256, 372, 399, 444, 553 |
| SfaNI | GCATC | 2 cut(s) | 379, 469 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| SmaI | CCCGGG | 1 cut(s) | 185 |
| SmlI | CTYRAG | 2 cut(s) | 220, 461 |
| SmoI | CTYRAG | 2 cut(s) | 220, 461 |
| Sse9I | AATT | 5 cut(s) | 55, 241, 317, 510, 599 |
| SsiI | CCGC | 3 cut(s) | 157, 507, 617 |
| SspI | AATATT | 1 cut(s) | 175 |
| StyD4I | CCNGG | 2 cut(s) | 182, 183 |
| TaaI | ACNGT | 1 cut(s) | 539 |
| TasI | AATT | 5 cut(s) | 55, 241, 317, 510, 599 |
| TatI | WGTACW | 1 cut(s) | 206 |
| Tru1I | TTAA | 5 cut(s) | 270, 315, 320, 345, 467 |
| Tru9I | TTAA | 5 cut(s) | 270, 315, 320, 345, 467 |
| TscAI | CASTG | 2 cut(s) | 107, 478 |
| TseI | GCWGC | 3 cut(s) | 18, 89, 254 |
| TspDTI | ATGAA | 2 cut(s) | 139, 628 |
| TspMI | CCCGGG | 1 cut(s) | 183 |
| TspRI | CASTG | 2 cut(s) | 107, 478 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 357 |
| XapI | RAATTY | 1 cut(s) | 599 |
| XceI | RCATGY | 1 cut(s) | 266 |
| XmaI | CCCGGG | 1 cut(s) | 183 |