Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 738 |
| Acc36I | ACCTGC | 1 cut(s) | 760 |
| AccBSI | CCGCTC | 1 cut(s) | 183 |
| AciI | CCGC | 8 cut(s) | 11, 38, 53, 72, 183, 186, 189, 657 |
| AclWI | GGATC | 3 cut(s) | 12, 310, 721 |
| AcoI | YGGCCR | 1 cut(s) | 62 |
| AcsI | RAATTY | 2 cut(s) | 271, 504 |
| AcuI | CTGAAG | 1 cut(s) | 354 |
| AcyI | GRCGYC | 1 cut(s) | 26 |
| AfaI | GTAC | 2 cut(s) | 44, 382 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 71, 424 |
| AgsI | TTSAA | 9 cut(s) | 268, 341, 512, 619, 626, 639, 665, 678, 788 |
| AhlI | ACTAGT | 1 cut(s) | 245 |
| AjnI | CCWGG | 2 cut(s) | 48, 523 |
| AluBI | AGCT | 7 cut(s) | 132, 213, 332, 443, 622, 698, 783 |
| AluI | AGCT | 7 cut(s) | 132, 213, 332, 443, 622, 698, 783 |
| Alw21I | GWGCWC | 2 cut(s) | 134, 215 |
| Alw26I | GTCTC | 1 cut(s) | 464 |
| AlwI | GGATC | 3 cut(s) | 12, 310, 721 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 356, 589 |
| AoxI | GGCC | 2 cut(s) | 62, 436 |
| ApeKI | GCWGC | 5 cut(s) | 254, 592, 695, 698, 760 |
| ApoI | RAATTY | 2 cut(s) | 271, 504 |
| AseI | ATTAAT | 1 cut(s) | 573 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 669 |
| AspLEI | GCGC | 2 cut(s) | 597, 739 |
| AspS9I | GGNCC | 1 cut(s) | 436 |
| AsuC2I | CCSGG | 2 cut(s) | 81, 136 |
| AsuHPI | GGTGA | 3 cut(s) | 181, 371, 655 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 4 cut(s) | 96, 134, 215, 746 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 373, 405 |
| BbsI | GAAGAC | 1 cut(s) | 219 |
| Bbv12I | GWGCWC | 2 cut(s) | 134, 215 |
| BbvI | GCAGC | 5 cut(s) | 241, 604, 685, 707, 747 |
| BccI | CCATC | 2 cut(s) | 140, 229 |
| BceAI | ACGGC | 2 cut(s) | 49, 334 |
| BciT130I | CCWGG | 2 cut(s) | 50, 525 |
| BclI | TGATCA | 1 cut(s) | 15 |
| BcnI | CCSGG | 2 cut(s) | 81, 136 |
| BcoDI | GTCTC | 1 cut(s) | 464 |
| BcuI | ACTAGT | 1 cut(s) | 245 |
| BfaI | CTAG | 2 cut(s) | 246, 306 |
| BfmI | CTRYAG | 1 cut(s) | 590 |
| BfoI | RGCGCY | 1 cut(s) | 598 |
| BfuAI | ACCTGC | 1 cut(s) | 760 |
| BisI | GCNGC | 9 cut(s) | 39, 73, 184, 187, 255, 593, 696, 699, 761 |
| BlsI | GCNGC | 9 cut(s) | 40, 74, 185, 188, 256, 594, 697, 700, 762 |
| BmcAI | AGTACT | 1 cut(s) | 382 |
| Bme1390I | CCNGG | 4 cut(s) | 50, 81, 136, 525 |
| BmgT120I | GGNCC | 1 cut(s) | 436 |
| BmiI | GGNNCC | 4 cut(s) | 6, 95, 437, 522 |
| BmrFI | CCNGG | 4 cut(s) | 50, 81, 136, 525 |
| BmsI | GCATC | 1 cut(s) | 682 |
| BpiI | GAAGAC | 1 cut(s) | 219 |
| BpuMI | CCSGG | 2 cut(s) | 81, 136 |
| BsaHI | GRCGYC | 1 cut(s) | 26 |
| BsaJI | CCNNGG | 2 cut(s) | 216, 725 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 97, 127 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 71, 424 |
| Bse1I | ACTGG | 1 cut(s) | 583 |
| BseBI | CCWGG | 2 cut(s) | 50, 525 |
| BseDI | CCNNGG | 2 cut(s) | 216, 725 |
| BseGI | GGATG | 6 cut(s) | 211, 226, 294, 504, 533, 579 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 71, 424 |
| BseMII | CTCAG | 1 cut(s) | 384 |
| BseNI | ACTGG | 1 cut(s) | 583 |
| BseXI | GCAGC | 5 cut(s) | 241, 604, 685, 707, 747 |
| BshFI | GGCC | 2 cut(s) | 64, 438 |
| BsiHKAI | GWGCWC | 2 cut(s) | 134, 215 |
| BsiSI | CCGG | 2 cut(s) | 80, 135 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 71, 424 |
| BsmAI | GTCTC | 1 cut(s) | 464 |
| BsnI | GGCC | 2 cut(s) | 64, 438 |
| Bsp1286I | GDGCHC | 4 cut(s) | 96, 134, 215, 746 |
| Bsp143I | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| BspACI | CCGC | 8 cut(s) | 11, 38, 53, 72, 183, 186, 189, 657 |
| BspANI | GGCC | 2 cut(s) | 64, 438 |
| BspCNI | CTCAG | 1 cut(s) | 385 |
| BspLI | GGNNCC | 4 cut(s) | 6, 95, 437, 522 |
| BspMAI | CTGCAG | 1 cut(s) | 594 |
| BspMI | ACCTGC | 1 cut(s) | 760 |
| BspPI | GGATC | 3 cut(s) | 12, 310, 721 |
| BsrBI | CCGCTC | 1 cut(s) | 183 |
| BsrI | ACTGG | 1 cut(s) | 583 |
| BssECI | CCNNGG | 2 cut(s) | 216, 725 |
| BssMI | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| BssNI | GRCGYC | 1 cut(s) | 26 |
| BssT1I | CCWWGG | 1 cut(s) | 725 |
| Bst2UI | CCWGG | 2 cut(s) | 50, 525 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 458 |
| Bst6I | CTCTTC | 1 cut(s) | 191 |
| BstACI | GRCGYC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 4 cut(s) | 77, 399, 746, 750 |
| BstDEI | CTNAG | 2 cut(s) | 231, 393 |
| BstF5I | GGATG | 6 cut(s) | 211, 226, 294, 504, 533, 579 |
| BstH2I | RGCGCY | 1 cut(s) | 598 |
| BstHHI | GCGC | 2 cut(s) | 597, 739 |
| BstKTI | GATC | 6 cut(s) | 7, 18, 305, 489, 685, 716 |
| BstMAI | GTCTC | 1 cut(s) | 464 |
| BstMBI | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 403, 470, 665, 745, 766 |
| BstNI | CCWGG | 2 cut(s) | 50, 525 |
| BstSCI | CCNGG | 4 cut(s) | 48, 79, 134, 523 |
| BstSFI | CTRYAG | 1 cut(s) | 590 |
| BstV1I | GCAGC | 5 cut(s) | 241, 604, 685, 707, 747 |
| BstV2I | GAAGAC | 1 cut(s) | 219 |
| BstX2I | RGATCY | 2 cut(s) | 4, 302 |
| BstYI | RGATCY | 2 cut(s) | 4, 302 |
| BsuRI | GGCC | 2 cut(s) | 64, 438 |
| BtsCI | GGATG | 6 cut(s) | 211, 226, 294, 504, 533, 579 |
| BtsI | GCAGTG | 1 cut(s) | 587 |
| BtsIMutI | CAGTG | 1 cut(s) | 587 |
| BveI | ACCTGC | 1 cut(s) | 760 |
| Cac8I | GCNNGC | 4 cut(s) | 77, 399, 746, 750 |
| CaiI | CAGNNNCTG | 2 cut(s) | 356, 589 |
| CfoI | GCGC | 2 cut(s) | 597, 739 |
| Cfr13I | GGNCC | 1 cut(s) | 436 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 2 cut(s) | 43, 381 |
| CviAII | CATG | 2 cut(s) | 419, 649 |
| CviQI | GTAC | 2 cut(s) | 43, 381 |
| DdeI | CTNAG | 2 cut(s) | 231, 393 |
| DpnI | GATC | 6 cut(s) | 6, 17, 304, 488, 684, 715 |
| DpnII | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| EaeI | YGGCCR | 1 cut(s) | 62 |
| Eam1104I | CTCTTC | 1 cut(s) | 191 |
| EarI | CTCTTC | 1 cut(s) | 191 |
| EciI | GGCGGA | 2 cut(s) | 68, 204 |
| Ecl136II | GAGCTC | 2 cut(s) | 132, 213 |
| Eco130I | CCWWGG | 1 cut(s) | 725 |
| Eco24I | GRGCYC | 4 cut(s) | 96, 134, 215, 746 |
| Eco53kI | GAGCTC | 2 cut(s) | 132, 213 |
| Eco57I | CTGAAG | 1 cut(s) | 354 |
| EcoICRI | GAGCTC | 2 cut(s) | 132, 213 |
| EcoRII | CCWGG | 2 cut(s) | 48, 523 |
| EcoT14I | CCWWGG | 1 cut(s) | 725 |
| EcoT38I | GRGCYC | 4 cut(s) | 96, 134, 215, 746 |
| ErhI | CCWWGG | 1 cut(s) | 725 |
| FaeI | CATG | 2 cut(s) | 422, 652 |
| FaiI | YATR | 7 cut(s) | 414, 420, 650, 735, 765, 767, 799 |
| FatI | CATG | 2 cut(s) | 418, 648 |
| FauI | CCCGC | 1 cut(s) | 664 |
| FauNDI | CATATG | 1 cut(s) | 765 |
| FbaI | TGATCA | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 9 cut(s) | 39, 73, 184, 187, 255, 593, 696, 699, 761 |
| FokI | GGATG | 6 cut(s) | 218, 233, 301, 511, 540, 566 |
| FriOI | GRGCYC | 4 cut(s) | 96, 134, 215, 746 |
| Fsp4HI | GCNGC | 9 cut(s) | 39, 73, 184, 187, 255, 593, 696, 699, 761 |
| FspBI | CTAG | 2 cut(s) | 246, 306 |
| FspI | TGCGCA | 1 cut(s) | 738 |
| GlaI | GCGC | 2 cut(s) | 596, 738 |
| GluI | GCNGC | 9 cut(s) | 39, 73, 184, 187, 255, 593, 696, 699, 761 |
| HaeII | RGCGCY | 1 cut(s) | 598 |
| HaeIII | GGCC | 2 cut(s) | 64, 438 |
| HapII | CCGG | 2 cut(s) | 80, 135 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 2 cut(s) | 597, 739 |
| Hin1I | GRCGYC | 1 cut(s) | 26 |
| Hin1II | CATG | 2 cut(s) | 422, 652 |
| Hin6I | GCGC | 2 cut(s) | 595, 737 |
| HinP1I | GCGC | 2 cut(s) | 595, 737 |
| HindIII | AAGCTT | 1 cut(s) | 620 |
| HinfI | GANTC | 3 cut(s) | 161, 224, 652 |
| HpaII | CCGG | 2 cut(s) | 80, 135 |
| HphI | GGTGA | 3 cut(s) | 181, 371, 655 |
| Hpy166II | GTNNAC | 1 cut(s) | 646 |
| Hpy188I | TCNGA | 3 cut(s) | 98, 217, 394 |
| Hpy188III | TCNNGA | 3 cut(s) | 306, 512, 560 |
| Hpy8I | GTNNAC | 1 cut(s) | 646 |
| Hpy99I | CGWCG | 1 cut(s) | 169 |
| HpyAV | CCTTC | 5 cut(s) | 186, 196, 399, 426, 684 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 458 |
| HpyCH4V | TGCA | 4 cut(s) | 592, 695, 763, 769 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 403, 470, 665, 745, 766 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 393 |
| Hsp92I | GRCGYC | 1 cut(s) | 26 |
| Hsp92II | CATG | 2 cut(s) | 422, 652 |
| HspAI | GCGC | 2 cut(s) | 595, 737 |
| Ksp22I | TGATCA | 1 cut(s) | 15 |
| Kzo9I | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| LmnI | GCTCC | 4 cut(s) | 99, 137, 175, 218 |
| Lsp1109I | GCAGC | 5 cut(s) | 241, 604, 685, 707, 747 |
| LweI | GCATC | 1 cut(s) | 682 |
| MaeI | CTAG | 2 cut(s) | 246, 306 |
| MaeIII | GTNAC | 3 cut(s) | 169, 359, 585 |
| MalI | GATC | 6 cut(s) | 6, 17, 304, 488, 684, 715 |
| MbiI | CCGCTC | 1 cut(s) | 183 |
| MboI | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| MboII | GAAGA | 3 cut(s) | 208, 219, 500 |
| MflI | RGATCY | 2 cut(s) | 4, 302 |
| MhlI | GDGCHC | 4 cut(s) | 96, 134, 215, 746 |
| MluCI | AATT | 6 cut(s) | 271, 322, 504, 574, 634, 686 |
| MlyI | GAGTC | 1 cut(s) | 233 |
| MmeI | TCCRAC | 1 cut(s) | 135 |
| MnlI | CCTC | 9 cut(s) | 16, 18, 151, 192, 211, 292, 364, 417, 489 |
| MroXI | GAANNNNTTC | 1 cut(s) | 669 |
| MseI | TTAA | 1 cut(s) | 573 |
| MspA1I | CMGCKG | 2 cut(s) | 13, 698 |
| MspI | CCGG | 2 cut(s) | 80, 135 |
| MspR9I | CCNGG | 4 cut(s) | 50, 81, 136, 525 |
| MvaI | CCWGG | 2 cut(s) | 50, 525 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 403, 470, 665, 745, 766 |
| NciI | CCSGG | 2 cut(s) | 81, 136 |
| NdeI | CATATG | 1 cut(s) | 765 |
| NdeII | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| NlaIII | CATG | 2 cut(s) | 422, 652 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 95, 437, 522 |
| NmeAIII | GCCGAG | 1 cut(s) | 14 |
| NmuCI | GTSAC | 3 cut(s) | 169, 359, 585 |
| NsbI | TGCGCA | 1 cut(s) | 738 |
| PdmI | GAANNNNTTC | 1 cut(s) | 669 |
| PfeI | GAWTC | 2 cut(s) | 161, 652 |
| PfoI | TCCNGGA | 2 cut(s) | 134, 523 |
| PkrI | GCNGC | 9 cut(s) | 40, 74, 185, 188, 256, 594, 697, 700, 762 |
| PleI | GAGTC | 1 cut(s) | 232 |
| PpsI | GAGTC | 1 cut(s) | 232 |
| PshBI | ATTAAT | 1 cut(s) | 573 |
| Psp124BI | GAGCTC | 2 cut(s) | 134, 215 |
| Psp6I | CCWGG | 2 cut(s) | 48, 523 |
| PspGI | CCWGG | 2 cut(s) | 48, 523 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 95, 437, 522 |
| PspPI | GGNCC | 1 cut(s) | 436 |
| PstI | CTGCAG | 1 cut(s) | 594 |
| PstNI | CAGNNNCTG | 2 cut(s) | 356, 589 |
| PsuI | RGATCY | 2 cut(s) | 4, 302 |
| PvuII | CAGCTG | 1 cut(s) | 698 |
| RsaI | GTAC | 2 cut(s) | 44, 382 |
| RsaNI | GTAC | 2 cut(s) | 43, 381 |
| SacI | GAGCTC | 2 cut(s) | 134, 215 |
| SaqAI | TTAA | 1 cut(s) | 573 |
| SatI | GCNGC | 9 cut(s) | 39, 73, 184, 187, 255, 593, 696, 699, 761 |
| Sau3AI | GATC | 6 cut(s) | 4, 15, 302, 486, 682, 713 |
| Sau96I | GGNCC | 1 cut(s) | 436 |
| ScaI | AGTACT | 1 cut(s) | 382 |
| SchI | GAGTC | 1 cut(s) | 233 |
| ScrFI | CCNGG | 4 cut(s) | 50, 81, 136, 525 |
| SduI | GDGCHC | 4 cut(s) | 96, 134, 215, 746 |
| SfaNI | GCATC | 1 cut(s) | 682 |
| SfcI | CTRYAG | 1 cut(s) | 590 |
| SpeI | ACTAGT | 1 cut(s) | 245 |
| Sse9I | AATT | 6 cut(s) | 271, 322, 504, 574, 634, 686 |
| SsiI | CCGC | 8 cut(s) | 11, 38, 53, 72, 183, 186, 189, 657 |
| SspMI | CTAG | 2 cut(s) | 246, 306 |
| SstI | GAGCTC | 2 cut(s) | 134, 215 |
| StyD4I | CCNGG | 4 cut(s) | 48, 79, 134, 523 |
| StyI | CCWWGG | 1 cut(s) | 725 |
| TaaI | ACNGT | 2 cut(s) | 169, 458 |
| TaqI | TCGA | 3 cut(s) | 164, 275, 603 |
| TasI | AATT | 6 cut(s) | 271, 322, 504, 574, 634, 686 |
| TatI | WGTACW | 1 cut(s) | 380 |
| TauI | GCSGC | 4 cut(s) | 41, 75, 186, 189 |
| TfiI | GAWTC | 2 cut(s) | 161, 652 |
| Tru1I | TTAA | 1 cut(s) | 573 |
| Tru9I | TTAA | 1 cut(s) | 573 |
| TscAI | CASTG | 1 cut(s) | 594 |
| TseFI | GTSAC | 3 cut(s) | 169, 359, 585 |
| TseI | GCWGC | 5 cut(s) | 254, 592, 695, 698, 760 |
| Tsp45I | GTSAC | 3 cut(s) | 169, 359, 585 |
| TspDTI | ATGAA | 3 cut(s) | 305, 515, 665 |
| TspGWI | ACGGA | 2 cut(s) | 188, 301 |
| TspRI | CASTG | 1 cut(s) | 594 |
| VspI | ATTAAT | 1 cut(s) | 573 |
| XapI | RAATTY | 2 cut(s) | 271, 504 |
| XbaI | TCTAGA | 1 cut(s) | 305 |
| XmnI | GAANNNNTTC | 1 cut(s) | 669 |
| XspI | CTAG | 2 cut(s) | 246, 306 |
| ZrmI | AGTACT | 1 cut(s) | 382 |