ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 739 |
| AccB1I | GGYRCC | 1 cut(s) | 739 |
| AccII | CGCG | 1 cut(s) | 165 |
| AciI | CCGC | 2 cut(s) | 8, 379 |
| AclWI | GGATC | 1 cut(s) | 812 |
| AcsI | RAATTY | 3 cut(s) | 392, 426, 553 |
| AdeI | CACNNNGTG | 1 cut(s) | 275 |
| AfaI | GTAC | 2 cut(s) | 127, 741 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 385, 528 |
| AgsI | TTSAA | 6 cut(s) | 34, 347, 505, 720, 730, 799 |
| AjnI | CCWGG | 4 cut(s) | 366, 440, 625, 641 |
| AluBI | AGCT | 4 cut(s) | 49, 93, 512, 581 |
| AluI | AGCT | 4 cut(s) | 49, 93, 512, 581 |
| Alw26I | GTCTC | 1 cut(s) | 529 |
| AlwI | GGATC | 1 cut(s) | 812 |
| AoxI | GGCC | 2 cut(s) | 746, 761 |
| ApeKI | GCWGC | 1 cut(s) | 46 |
| ApoI | RAATTY | 3 cut(s) | 392, 426, 553 |
| Asp718I | GGTACC | 1 cut(s) | 739 |
| AspLEI | GCGC | 1 cut(s) | 165 |
| AsuC2I | CCSGG | 1 cut(s) | 745 |
| AsuHPI | GGTGA | 3 cut(s) | 217, 304, 416 |
| BanI | GGYRCC | 1 cut(s) | 739 |
| BbsI | GAAGAC | 3 cut(s) | 141, 185, 239 |
| BbvI | GCAGC | 1 cut(s) | 58 |
| BciT130I | CCWGG | 4 cut(s) | 368, 442, 627, 643 |
| BciVI | GTATCC | 2 cut(s) | 467, 678 |
| BclI | TGATCA | 1 cut(s) | 412 |
| BcnI | CCSGG | 1 cut(s) | 745 |
| BcoDI | GTCTC | 1 cut(s) | 529 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BfmI | CTRYAG | 1 cut(s) | 44 |
| BfuI | GTATCC | 2 cut(s) | 467, 678 |
| BisI | GCNGC | 1 cut(s) | 47 |
| BlsI | GCNGC | 1 cut(s) | 48 |
| Bme1390I | CCNGG | 5 cut(s) | 368, 442, 627, 643, 745 |
| BmiI | GGNNCC | 1 cut(s) | 741 |
| BmrFI | CCNGG | 5 cut(s) | 368, 442, 627, 643, 745 |
| BmrI | ACTGGG | 1 cut(s) | 714 |
| BmsI | GCATC | 1 cut(s) | 367 |
| BmuI | ACTGGG | 1 cut(s) | 714 |
| BpiI | GAAGAC | 3 cut(s) | 141, 185, 239 |
| BpuMI | CCSGG | 1 cut(s) | 745 |
| BsaJI | CCNNGG | 6 cut(s) | 151, 441, 625, 626, 734, 743 |
| BsaWI | WCCGGW | 2 cut(s) | 772, 820 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 385, 528 |
| Bse1I | ACTGG | 2 cut(s) | 260, 709 |
| BseBI | CCWGG | 4 cut(s) | 368, 442, 627, 643 |
| BseDI | CCNNGG | 6 cut(s) | 151, 441, 625, 626, 734, 743 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 385, 528 |
| BseMII | CTCAG | 1 cut(s) | 143 |
| BseNI | ACTGG | 2 cut(s) | 260, 709 |
| BseRI | GAGGAG | 1 cut(s) | 32 |
| BseXI | GCAGC | 1 cut(s) | 58 |
| Bsh1236I | CGCG | 1 cut(s) | 165 |
| BshFI | GGCC | 2 cut(s) | 748, 763 |
| BshNI | GGYRCC | 1 cut(s) | 739 |
| BsiSI | CCGG | 3 cut(s) | 745, 773, 821 |
| BslFI | GGGAC | 1 cut(s) | 458 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 385, 528 |
| BsmAI | GTCTC | 1 cut(s) | 529 |
| BsmFI | GGGAC | 1 cut(s) | 458 |
| BsnI | GGCC | 2 cut(s) | 748, 763 |
| Bsp143I | GATC | 2 cut(s) | 412, 817 |
| Bsp19I | CCATGG | 1 cut(s) | 734 |
| BspACI | CCGC | 2 cut(s) | 8, 379 |
| BspANI | GGCC | 2 cut(s) | 748, 763 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspFNI | CGCG | 1 cut(s) | 165 |
| BspLI | GGNNCC | 1 cut(s) | 741 |
| BspMAI | CTGCAG | 1 cut(s) | 48 |
| BspPI | GGATC | 1 cut(s) | 812 |
| BspQI | GCTCTTC | 1 cut(s) | 519 |
| BspT107I | GGYRCC | 1 cut(s) | 739 |
| BsrI | ACTGG | 2 cut(s) | 260, 709 |
| BssECI | CCNNGG | 6 cut(s) | 151, 441, 625, 626, 734, 743 |
| BssMI | GATC | 2 cut(s) | 412, 817 |
| BssT1I | CCWWGG | 2 cut(s) | 151, 734 |
| Bst2UI | CCWGG | 4 cut(s) | 368, 442, 627, 643 |
| Bst6I | CTCTTC | 1 cut(s) | 519 |
| BstC8I | GCNNGC | 2 cut(s) | 283, 438 |
| BstDEI | CTNAG | 5 cut(s) | 129, 139, 201, 272, 828 |
| BstDSI | CCRYGG | 1 cut(s) | 734 |
| BstFNI | CGCG | 1 cut(s) | 165 |
| BstHHI | GCGC | 1 cut(s) | 165 |
| BstKTI | GATC | 2 cut(s) | 415, 820 |
| BstMAI | GTCTC | 1 cut(s) | 529 |
| BstMBI | GATC | 2 cut(s) | 412, 817 |
| BstNI | CCWGG | 4 cut(s) | 368, 442, 627, 643 |
| BstNSI | RCATGY | 1 cut(s) | 614 |
| BstSCI | CCNGG | 5 cut(s) | 366, 440, 625, 641, 743 |
| BstSFI | CTRYAG | 1 cut(s) | 44 |
| BstUI | CGCG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 1 cut(s) | 58 |
| BstV2I | GAAGAC | 3 cut(s) | 141, 185, 239 |
| BsuI | GTATCC | 2 cut(s) | 467, 678 |
| BsuRI | GGCC | 2 cut(s) | 748, 763 |
| BtgI | CCRYGG | 1 cut(s) | 734 |
| BtsIMutI | CAGTG | 1 cut(s) | 702 |
| Cac8I | GCNNGC | 2 cut(s) | 283, 438 |
| CfoI | GCGC | 1 cut(s) | 165 |
| Csp6I | GTAC | 2 cut(s) | 126, 740 |
| CviAII | CATG | 4 cut(s) | 176, 385, 611, 735 |
| CviQI | GTAC | 2 cut(s) | 126, 740 |
| DdeI | CTNAG | 5 cut(s) | 129, 139, 201, 272, 828 |
| DpnI | GATC | 2 cut(s) | 414, 819 |
| DpnII | GATC | 2 cut(s) | 412, 817 |
| DraIII | CACNNNGTG | 1 cut(s) | 275 |
| Eam1104I | CTCTTC | 1 cut(s) | 519 |
| EarI | CTCTTC | 1 cut(s) | 519 |
| Eco130I | CCWWGG | 2 cut(s) | 151, 734 |
| Eco147I | AGGCCT | 1 cut(s) | 763 |
| EcoRI | GAATTC | 1 cut(s) | 392 |
| EcoRII | CCWGG | 4 cut(s) | 366, 440, 625, 641 |
| EcoT14I | CCWWGG | 2 cut(s) | 151, 734 |
| ErhI | CCWWGG | 2 cut(s) | 151, 734 |
| FaeI | CATG | 4 cut(s) | 179, 388, 614, 738 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 657, 689 |
| FaqI | GGGAC | 1 cut(s) | 458 |
| FatI | CATG | 4 cut(s) | 175, 384, 610, 734 |
| FauNDI | CATATG | 1 cut(s) | 492 |
| FbaI | TGATCA | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 1 cut(s) | 47 |
| Fsp4HI | GCNGC | 1 cut(s) | 47 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GlaI | GCGC | 1 cut(s) | 164 |
| GluI | GCNGC | 1 cut(s) | 47 |
| HaeIII | GGCC | 2 cut(s) | 748, 763 |
| HapII | CCGG | 3 cut(s) | 745, 773, 821 |
| HhaI | GCGC | 1 cut(s) | 165 |
| Hin1II | CATG | 4 cut(s) | 179, 388, 614, 738 |
| Hin6I | GCGC | 1 cut(s) | 163 |
| HinP1I | GCGC | 1 cut(s) | 163 |
| HincII | GTYRAC | 2 cut(s) | 71, 169 |
| HindII | GTYRAC | 2 cut(s) | 71, 169 |
| HinfI | GANTC | 4 cut(s) | 67, 156, 407, 632 |
| HpaII | CCGG | 3 cut(s) | 745, 773, 821 |
| HphI | GGTGA | 3 cut(s) | 217, 304, 416 |
| Hpy166II | GTNNAC | 4 cut(s) | 71, 79, 169, 622 |
| Hpy188I | TCNGA | 3 cut(s) | 412, 519, 601 |
| Hpy188III | TCNNGA | 2 cut(s) | 85, 131 |
| Hpy8I | GTNNAC | 4 cut(s) | 71, 79, 169, 622 |
| HpyAV | CCTTC | 3 cut(s) | 414, 464, 793 |
| HpyCH4IV | ACGT | 1 cut(s) | 688 |
| HpyCH4V | TGCA | 4 cut(s) | 46, 313, 376, 677 |
| HpyF3I | CTNAG | 5 cut(s) | 129, 139, 201, 272, 828 |
| HpySE526I | ACGT | 1 cut(s) | 688 |
| Hsp92II | CATG | 4 cut(s) | 179, 388, 614, 738 |
| HspAI | GCGC | 1 cut(s) | 163 |
| KpnI | GGTACC | 1 cut(s) | 743 |
| Ksp22I | TGATCA | 1 cut(s) | 412 |
| Kzo9I | GATC | 2 cut(s) | 412, 817 |
| LguI | GCTCTTC | 1 cut(s) | 519 |
| Lsp1109I | GCAGC | 1 cut(s) | 58 |
| LweI | GCATC | 1 cut(s) | 367 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MaeII | ACGT | 1 cut(s) | 688 |
| MaeIII | GTNAC | 2 cut(s) | 404, 823 |
| MalI | GATC | 2 cut(s) | 414, 819 |
| MboI | GATC | 2 cut(s) | 412, 817 |
| MboII | GAAGA | 9 cut(s) | 46, 146, 185, 244, 262, 479, 506, 554, 803 |
| MluCI | AATT | 5 cut(s) | 347, 392, 426, 553, 813 |
| MlyI | GAGTC | 3 cut(s) | 76, 165, 401 |
| MmeI | TCCRAC | 1 cut(s) | 768 |
| MnlI | CCTC | 6 cut(s) | 10, 21, 283, 467, 759, 775 |
| MseI | TTAA | 3 cut(s) | 300, 653, 812 |
| MspI | CCGG | 3 cut(s) | 745, 773, 821 |
| MspR9I | CCNGG | 5 cut(s) | 368, 442, 627, 643, 745 |
| MvaI | CCWGG | 4 cut(s) | 368, 442, 627, 643 |
| MvnI | CGCG | 1 cut(s) | 165 |
| NciI | CCSGG | 1 cut(s) | 745 |
| NcoI | CCATGG | 1 cut(s) | 734 |
| NdeI | CATATG | 1 cut(s) | 492 |
| NdeII | GATC | 2 cut(s) | 412, 817 |
| NlaIII | CATG | 4 cut(s) | 179, 388, 614, 738 |
| NlaIV | GGNNCC | 1 cut(s) | 741 |
| NmuCI | GTSAC | 1 cut(s) | 404 |
| NspI | RCATGY | 1 cut(s) | 614 |
| PasI | CCCWGGG | 1 cut(s) | 626 |
| PceI | AGGCCT | 1 cut(s) | 763 |
| PciSI | GCTCTTC | 1 cut(s) | 519 |
| PfeI | GAWTC | 1 cut(s) | 632 |
| PkrI | GCNGC | 1 cut(s) | 48 |
| PleI | GAGTC | 3 cut(s) | 75, 164, 401 |
| PpsI | GAGTC | 3 cut(s) | 75, 164, 401 |
| Psp6I | CCWGG | 4 cut(s) | 366, 440, 625, 641 |
| PspGI | CCWGG | 4 cut(s) | 366, 440, 625, 641 |
| PspN4I | GGNNCC | 1 cut(s) | 741 |
| PstI | CTGCAG | 1 cut(s) | 48 |
| RsaI | GTAC | 2 cut(s) | 127, 741 |
| RsaNI | GTAC | 2 cut(s) | 126, 740 |
| SapI | GCTCTTC | 1 cut(s) | 519 |
| SaqAI | TTAA | 3 cut(s) | 300, 653, 812 |
| SatI | GCNGC | 1 cut(s) | 47 |
| Sau3AI | GATC | 2 cut(s) | 412, 817 |
| SchI | GAGTC | 3 cut(s) | 76, 165, 401 |
| ScrFI | CCNGG | 5 cut(s) | 368, 442, 627, 643, 745 |
| SfaNI | GCATC | 1 cut(s) | 367 |
| SfcI | CTRYAG | 1 cut(s) | 44 |
| Sse9I | AATT | 5 cut(s) | 347, 392, 426, 553, 813 |
| SseBI | AGGCCT | 1 cut(s) | 763 |
| SsiI | CCGC | 2 cut(s) | 8, 379 |
| SspI | AATATT | 2 cut(s) | 185, 587 |
| SspMI | CTAG | 1 cut(s) | 237 |
| StuI | AGGCCT | 1 cut(s) | 763 |
| StyD4I | CCNGG | 5 cut(s) | 366, 440, 625, 641, 743 |
| StyI | CCWWGG | 2 cut(s) | 151, 734 |
| TaiI | ACGT | 1 cut(s) | 691 |
| TaqI | TCGA | 1 cut(s) | 65 |
| TasI | AATT | 5 cut(s) | 347, 392, 426, 553, 813 |
| TfiI | GAWTC | 1 cut(s) | 632 |
| Tru1I | TTAA | 3 cut(s) | 300, 653, 812 |
| Tru9I | TTAA | 3 cut(s) | 300, 653, 812 |
| TscAI | CASTG | 1 cut(s) | 709 |
| TseFI | GTSAC | 1 cut(s) | 404 |
| TseI | GCWGC | 1 cut(s) | 46 |
| Tsp45I | GTSAC | 1 cut(s) | 404 |
| TspDTI | ATGAA | 3 cut(s) | 69, 263, 671 |
| TspRI | CASTG | 1 cut(s) | 709 |
| XapI | RAATTY | 3 cut(s) | 392, 426, 553 |
| XceI | RCATGY | 1 cut(s) | 614 |
| XspI | CTAG | 1 cut(s) | 237 |