ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR | PF01535 | 17 - 46 | 1.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 45 - 78 | 3.6e-10 | PPR repeat family |
| PPR_1 | PF12854 | 45 - 73 | 1.5e-08 | PPR repeat |
| PPR | PF01535 | 48 - 78 | 4.7e-10 | PPR repeat |
| PPR_2 | PF13041 | 76 - 108 | 1e-06 | PPR repeat family |
| PPR | PF01535 | 79 - 108 | 4.8e-07 | PPR repeat |
| PPR_1 | PF12854 | 106 - 135 | 2.4e-07 | PPR repeat |
| PPR_2 | PF13041 | 107 - 140 | 5.3e-07 | PPR repeat family |
| PPR | PF01535 | 110 - 140 | 9.3e-09 | PPR repeat |
| PPR_2 | PF13041 | 138 - 166 | 4.7e-09 | PPR repeat family |
| PPR_1 | PF12854 | 139 - 166 | 4.5e-09 | PPR repeat |
| PPR | PF01535 | 141 - 166 | 1e-10 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 173 |
| AciI | CCGC | 5 cut(s) | 72, 91, 273, 339, 350 |
| AclWI | GGATC | 1 cut(s) | 380 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 21 |
| AfaI | GTAC | 1 cut(s) | 170 |
| AgsI | TTSAA | 3 cut(s) | 20, 360, 482 |
| AjnI | CCWGG | 1 cut(s) | 290 |
| AluBI | AGCT | 1 cut(s) | 383 |
| AluI | AGCT | 1 cut(s) | 383 |
| Alw26I | GTCTC | 1 cut(s) | 427 |
| AlwI | GGATC | 1 cut(s) | 380 |
| AoxI | GGCC | 2 cut(s) | 3, 288 |
| ApoI | RAATTY | 1 cut(s) | 21 |
| AspS9I | GGNCC | 1 cut(s) | 336 |
| AsuHPI | GGTGA | 2 cut(s) | 47, 142 |
| AvaII | GGWCC | 1 cut(s) | 336 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BauI | CACGAG | 1 cut(s) | 424 |
| BbvCI | CCTCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 1 cut(s) | 158 |
| BceAI | ACGGC | 1 cut(s) | 273 |
| BciT130I | CCWGG | 1 cut(s) | 292 |
| BclI | TGATCA | 2 cut(s) | 190, 438 |
| BcoDI | GTCTC | 1 cut(s) | 427 |
| BfaI | CTAG | 1 cut(s) | 384 |
| Bme1390I | CCNGG | 1 cut(s) | 292 |
| Bme18I | GGWCC | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 1 cut(s) | 336 |
| BmiI | GGNNCC | 1 cut(s) | 179 |
| BmrFI | CCNGG | 1 cut(s) | 292 |
| BmsI | GCATC | 4 cut(s) | 207, 300, 393, 486 |
| BpmI | CTGGAG | 1 cut(s) | 488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 86 |
| Bsa29I | ATCGAT | 1 cut(s) | 375 |
| BsaI | GGTCTC | 1 cut(s) | 427 |
| BsaJI | CCNNGG | 1 cut(s) | 63 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 92, 122 |
| Bse118I | RCCGGY | 1 cut(s) | 127 |
| Bse3DI | GCAATG | 2 cut(s) | 348, 441 |
| BseBI | CCWGG | 1 cut(s) | 292 |
| BseCI | ATCGAT | 1 cut(s) | 375 |
| BseDI | CCNNGG | 1 cut(s) | 63 |
| BseGI | GGATG | 4 cut(s) | 222, 328, 408, 501 |
| BseMI | GCAATG | 2 cut(s) | 348, 441 |
| BseMII | CTCAG | 3 cut(s) | 77, 96, 467 |
| BseRI | GAGGAG | 4 cut(s) | 113, 190, 299, 485 |
| Bsh1236I | CGCG | 1 cut(s) | 173 |
| BshFI | GGCC | 2 cut(s) | 5, 290 |
| BshVI | ATCGAT | 1 cut(s) | 375 |
| BsiSI | CCGG | 3 cut(s) | 128, 221, 314 |
| BsmAI | GTCTC | 1 cut(s) | 427 |
| BsmI | GAATGC | 1 cut(s) | 436 |
| BsnI | GGCC | 2 cut(s) | 5, 290 |
| Bso31I | GGTCTC | 1 cut(s) | 427 |
| Bsp143I | GATC | 3 cut(s) | 190, 372, 438 |
| BspACI | CCGC | 5 cut(s) | 72, 91, 273, 339, 350 |
| BspANI | GGCC | 2 cut(s) | 5, 290 |
| BspCNI | CTCAG | 3 cut(s) | 78, 97, 466 |
| BspDI | ATCGAT | 1 cut(s) | 375 |
| BspFNI | CGCG | 1 cut(s) | 173 |
| BspLI | GGNNCC | 1 cut(s) | 179 |
| BspPI | GGATC | 1 cut(s) | 380 |
| BspTNI | GGTCTC | 1 cut(s) | 427 |
| BsrDI | GCAATG | 2 cut(s) | 348, 441 |
| BsrFI | RCCGGY | 1 cut(s) | 127 |
| BssAI | RCCGGY | 1 cut(s) | 127 |
| BssECI | CCNNGG | 1 cut(s) | 63 |
| BssMI | GATC | 3 cut(s) | 190, 372, 438 |
| BssSI | CACGAG | 1 cut(s) | 424 |
| BssT1I | CCWWGG | 1 cut(s) | 63 |
| Bst2BI | CACGAG | 1 cut(s) | 424 |
| Bst2UI | CCWGG | 1 cut(s) | 292 |
| Bst4CI | ACNGT | 1 cut(s) | 250 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 347 |
| BstDEI | CTNAG | 3 cut(s) | 86, 105, 453 |
| BstF5I | GGATG | 4 cut(s) | 222, 328, 408, 501 |
| BstFNI | CGCG | 1 cut(s) | 173 |
| BstKTI | GATC | 3 cut(s) | 193, 375, 441 |
| BstMAI | GTCTC | 1 cut(s) | 427 |
| BstMBI | GATC | 3 cut(s) | 190, 372, 438 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 347 |
| BstNI | CCWGG | 1 cut(s) | 292 |
| BstSCI | CCNGG | 1 cut(s) | 290 |
| BstUI | CGCG | 1 cut(s) | 173 |
| Bsu15I | ATCGAT | 1 cut(s) | 375 |
| BsuRI | GGCC | 2 cut(s) | 5, 290 |
| BsuTUI | ATCGAT | 1 cut(s) | 375 |
| BtsCI | GGATG | 4 cut(s) | 222, 328, 408, 501 |
| Cfr10I | RCCGGY | 1 cut(s) | 127 |
| Cfr13I | GGNCC | 1 cut(s) | 336 |
| ClaI | ATCGAT | 1 cut(s) | 375 |
| Csp6I | GTAC | 1 cut(s) | 169 |
| CviQI | GTAC | 1 cut(s) | 169 |
| DdeI | CTNAG | 3 cut(s) | 86, 105, 453 |
| DpnI | GATC | 3 cut(s) | 192, 374, 440 |
| DpnII | GATC | 3 cut(s) | 190, 372, 438 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EciI | GGCGGA | 1 cut(s) | 106 |
| Eco130I | CCWWGG | 1 cut(s) | 63 |
| Eco31I | GGTCTC | 1 cut(s) | 427 |
| Eco47I | GGWCC | 1 cut(s) | 336 |
| EcoRII | CCWGG | 1 cut(s) | 290 |
| EcoT14I | CCWWGG | 1 cut(s) | 63 |
| ErhI | CCWWGG | 1 cut(s) | 63 |
| FaiI | YATR | 4 cut(s) | 78, 80, 158, 450 |
| FauI | CCCGC | 3 cut(s) | 65, 266, 343 |
| FbaI | TGATCA | 2 cut(s) | 190, 438 |
| FokI | GGATG | 4 cut(s) | 229, 335, 415, 508 |
| FspBI | CTAG | 1 cut(s) | 384 |
| GsuI | CTGGAG | 1 cut(s) | 488 |
| HaeIII | GGCC | 2 cut(s) | 5, 290 |
| HapII | CCGG | 3 cut(s) | 128, 221, 314 |
| HpaII | CCGG | 3 cut(s) | 128, 221, 314 |
| HphI | GGTGA | 2 cut(s) | 47, 142 |
| Hpy166II | GTNNAC | 1 cut(s) | 336 |
| Hpy188I | TCNGA | 1 cut(s) | 456 |
| Hpy188III | TCNNGA | 2 cut(s) | 360, 479 |
| Hpy8I | GTNNAC | 1 cut(s) | 336 |
| HpyAV | CCTTC | 1 cut(s) | 405 |
| HpyCH4III | ACNGT | 1 cut(s) | 250 |
| HpyCH4V | TGCA | 1 cut(s) | 434 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 347 |
| HpyF3I | CTNAG | 3 cut(s) | 86, 105, 453 |
| Ksp22I | TGATCA | 2 cut(s) | 190, 438 |
| Kzo9I | GATC | 3 cut(s) | 190, 372, 438 |
| LmnI | GCTCC | 1 cut(s) | 177 |
| LweI | GCATC | 4 cut(s) | 207, 300, 393, 486 |
| MaeI | CTAG | 1 cut(s) | 384 |
| MalI | GATC | 3 cut(s) | 192, 374, 440 |
| MboI | GATC | 3 cut(s) | 190, 372, 438 |
| MboII | GAAGA | 1 cut(s) | 52 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 21 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 180 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 30 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 3 cut(s) | 128, 221, 314 |
| MspR9I | CCNGG | 1 cut(s) | 292 |
| Mva1269I | GAATGC | 1 cut(s) | 436 |
| MvaI | CCWGG | 1 cut(s) | 292 |
| MvnI | CGCG | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 347 |
| NdeII | GATC | 3 cut(s) | 190, 372, 438 |
| NlaIV | GGNNCC | 1 cut(s) | 179 |
| NmeAIII | GCCGAG | 1 cut(s) | 432 |
| PctI | GAATGC | 1 cut(s) | 436 |
| Psp6I | CCWGG | 1 cut(s) | 290 |
| PspGI | CCWGG | 1 cut(s) | 290 |
| PspN4I | GGNNCC | 1 cut(s) | 179 |
| PspPI | GGNCC | 1 cut(s) | 336 |
| RsaI | GTAC | 1 cut(s) | 170 |
| RsaNI | GTAC | 1 cut(s) | 169 |
| SaqAI | TTAA | 1 cut(s) | 30 |
| Sau3AI | GATC | 3 cut(s) | 190, 372, 438 |
| Sau96I | GGNCC | 1 cut(s) | 336 |
| ScrFI | CCNGG | 1 cut(s) | 292 |
| SetI | ASST | 2 cut(s) | 189, 385 |
| SfaNI | GCATC | 4 cut(s) | 207, 300, 393, 486 |
| SinI | GGWCC | 1 cut(s) | 336 |
| Sse9I | AATT | 1 cut(s) | 21 |
| SsiI | CCGC | 5 cut(s) | 72, 91, 273, 339, 350 |
| SspMI | CTAG | 1 cut(s) | 384 |
| StyD4I | CCNGG | 1 cut(s) | 290 |
| StyI | CCWWGG | 1 cut(s) | 63 |
| TaaI | ACNGT | 1 cut(s) | 250 |
| TaqI | TCGA | 1 cut(s) | 375 |
| TasI | AATT | 1 cut(s) | 21 |
| Tru1I | TTAA | 1 cut(s) | 30 |
| Tru9I | TTAA | 1 cut(s) | 30 |
| TspDTI | ATGAA | 1 cut(s) | 393 |
| VpaK11BI | GGWCC | 1 cut(s) | 336 |
| XapI | RAATTY | 1 cut(s) | 21 |
| XspI | CTAG | 1 cut(s) | 384 |