Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 252 |
| AciI | CCGC | 1 cut(s) | 68 |
| AcoI | YGGCCR | 1 cut(s) | 154 |
| AcsI | RAATTY | 4 cut(s) | 126, 166, 314, 393 |
| AfaI | GTAC | 2 cut(s) | 599, 689 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 501 |
| AgsI | TTSAA | 2 cut(s) | 121, 589 |
| AjnI | CCWGG | 1 cut(s) | 668 |
| AluBI | AGCT | 4 cut(s) | 39, 149, 230, 378 |
| AluI | AGCT | 4 cut(s) | 39, 149, 230, 378 |
| Alw26I | GTCTC | 2 cut(s) | 24, 663 |
| AoxI | GGCC | 3 cut(s) | 154, 363, 460 |
| ApoI | RAATTY | 4 cut(s) | 126, 166, 314, 393 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 34 |
| AsuHPI | GGTGA | 2 cut(s) | 175, 518 |
| BalI | TGGCCA | 1 cut(s) | 156 |
| BccI | CCATC | 3 cut(s) | 486, 509, 627 |
| BceAI | ACGGC | 1 cut(s) | 324 |
| BciT130I | CCWGG | 1 cut(s) | 670 |
| BcoDI | GTCTC | 2 cut(s) | 24, 663 |
| BfaI | CTAG | 1 cut(s) | 227 |
| BlpI | GCTNAGC | 1 cut(s) | 112 |
| Bme1390I | CCNGG | 1 cut(s) | 670 |
| BmrFI | CCNGG | 1 cut(s) | 670 |
| BmsI | GCATC | 1 cut(s) | 500 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 112 |
| BpuEI | CTTGAG | 2 cut(s) | 6, 19 |
| BsaBI | GATNNNNATC | 1 cut(s) | 477 |
| BsaI | GGTCTC | 1 cut(s) | 24 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 501 |
| Bse118I | RCCGGY | 1 cut(s) | 289 |
| Bse1I | ACTGG | 2 cut(s) | 20, 362 |
| Bse3DI | GCAATG | 2 cut(s) | 284, 441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 477 |
| BseBI | CCWGG | 1 cut(s) | 670 |
| BseGI | GGATG | 4 cut(s) | 76, 491, 520, 638 |
| BseJI | GATNNNNATC | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 501 |
| BseMI | GCAATG | 2 cut(s) | 284, 441 |
| BseMII | CTCAG | 2 cut(s) | 365, 668 |
| BseNI | ACTGG | 2 cut(s) | 20, 362 |
| Bsh1236I | CGCG | 1 cut(s) | 252 |
| BshFI | GGCC | 3 cut(s) | 156, 365, 462 |
| BsiSI | CCGG | 1 cut(s) | 290 |
| BslFI | GGGAC | 1 cut(s) | 103 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 501 |
| BsmAI | GTCTC | 2 cut(s) | 24, 663 |
| BsmFI | GGGAC | 1 cut(s) | 103 |
| BsmI | GAATGC | 1 cut(s) | 113 |
| BsnI | GGCC | 3 cut(s) | 156, 365, 462 |
| Bso31I | GGTCTC | 1 cut(s) | 24 |
| Bsp143I | GATC | 1 cut(s) | 247 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 112 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BspANI | GGCC | 3 cut(s) | 156, 365, 462 |
| BspCNI | CTCAG | 2 cut(s) | 366, 667 |
| BspFNI | CGCG | 1 cut(s) | 252 |
| BspQI | GCTCTTC | 1 cut(s) | 252 |
| BspTNI | GGTCTC | 1 cut(s) | 24 |
| BsrDI | GCAATG | 2 cut(s) | 284, 441 |
| BsrFI | RCCGGY | 1 cut(s) | 289 |
| BsrI | ACTGG | 2 cut(s) | 20, 362 |
| BssAI | RCCGGY | 1 cut(s) | 289 |
| BssMI | GATC | 1 cut(s) | 247 |
| Bst2UI | CCWGG | 1 cut(s) | 670 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstC8I | GCNNGC | 1 cut(s) | 621 |
| BstDEI | CTNAG | 3 cut(s) | 112, 374, 654 |
| BstF5I | GGATG | 4 cut(s) | 76, 491, 520, 638 |
| BstFNI | CGCG | 1 cut(s) | 252 |
| BstKTI | GATC | 1 cut(s) | 250 |
| BstMAI | GTCTC | 2 cut(s) | 24, 663 |
| BstMBI | GATC | 1 cut(s) | 247 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 317, 620 |
| BstNI | CCWGG | 1 cut(s) | 670 |
| BstSCI | CCNGG | 1 cut(s) | 668 |
| BstUI | CGCG | 1 cut(s) | 252 |
| BsuRI | GGCC | 3 cut(s) | 156, 365, 462 |
| BtsCI | GGATG | 4 cut(s) | 76, 491, 520, 638 |
| BtsI | GCAGTG | 1 cut(s) | 697 |
| BtsIMutI | CAGTG | 2 cut(s) | 13, 697 |
| Cac8I | GCNNGC | 1 cut(s) | 621 |
| Cfr10I | RCCGGY | 1 cut(s) | 289 |
| Csp6I | GTAC | 2 cut(s) | 598, 688 |
| CviAII | CATG | 2 cut(s) | 263, 569 |
| CviQI | GTAC | 2 cut(s) | 598, 688 |
| DdeI | CTNAG | 3 cut(s) | 112, 374, 654 |
| DpnI | GATC | 1 cut(s) | 249 |
| DpnII | GATC | 1 cut(s) | 247 |
| EaeI | YGGCCR | 1 cut(s) | 154 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| Eco147I | AGGCCT | 1 cut(s) | 462 |
| Eco31I | GGTCTC | 1 cut(s) | 24 |
| Eco32I | GATATC | 2 cut(s) | 76, 475 |
| EcoRII | CCWGG | 1 cut(s) | 668 |
| EcoRV | GATATC | 2 cut(s) | 76, 475 |
| FaeI | CATG | 2 cut(s) | 266, 572 |
| FaqI | GGGAC | 1 cut(s) | 103 |
| FatI | CATG | 2 cut(s) | 262, 568 |
| FokI | GGATG | 4 cut(s) | 83, 478, 527, 645 |
| FspBI | CTAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 3 cut(s) | 156, 365, 462 |
| HapII | CCGG | 1 cut(s) | 290 |
| Hin1II | CATG | 2 cut(s) | 266, 572 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HinfI | GANTC | 3 cut(s) | 10, 370, 528 |
| HpaII | CCGG | 1 cut(s) | 290 |
| HphI | GGTGA | 2 cut(s) | 175, 518 |
| Hpy166II | GTNNAC | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 1 cut(s) | 375 |
| Hpy188III | TCNNGA | 1 cut(s) | 23 |
| Hpy8I | GTNNAC | 1 cut(s) | 281 |
| HpyAV | CCTTC | 3 cut(s) | 127, 355, 505 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 242, 434, 491, 623 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 317, 620 |
| HpyF3I | CTNAG | 3 cut(s) | 112, 374, 654 |
| Hsp92II | CATG | 2 cut(s) | 266, 572 |
| Kzo9I | GATC | 1 cut(s) | 247 |
| LguI | GCTCTTC | 1 cut(s) | 252 |
| LmnI | GCTCC | 2 cut(s) | 44, 52 |
| LpnPI | CCDG | 6 cut(s) | 138, 303, 343, 369, 655, 682 |
| LweI | GCATC | 1 cut(s) | 500 |
| MaeI | CTAG | 1 cut(s) | 227 |
| MaeIII | GTNAC | 2 cut(s) | 443, 506 |
| MalI | GATC | 1 cut(s) | 249 |
| MboI | GATC | 1 cut(s) | 247 |
| MboII | GAAGA | 2 cut(s) | 116, 269 |
| MfeI | CAATTG | 1 cut(s) | 482 |
| MlsI | TGGCCA | 1 cut(s) | 156 |
| MluCI | AATT | 8 cut(s) | 126, 166, 314, 393, 439, 482, 639, 663 |
| MluNI | TGGCCA | 1 cut(s) | 156 |
| MnlI | CCTC | 6 cut(s) | 43, 437, 565, 569, 663, 678 |
| Mox20I | TGGCCA | 1 cut(s) | 156 |
| MscI | TGGCCA | 1 cut(s) | 156 |
| MseI | TTAA | 3 cut(s) | 204, 350, 560 |
| Msp20I | TGGCCA | 1 cut(s) | 156 |
| MspI | CCGG | 1 cut(s) | 290 |
| MspR9I | CCNGG | 1 cut(s) | 670 |
| MunI | CAATTG | 1 cut(s) | 482 |
| Mva1269I | GAATGC | 1 cut(s) | 113 |
| MvaI | CCWGG | 1 cut(s) | 670 |
| MvnI | CGCG | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 317, 620 |
| NdeII | GATC | 1 cut(s) | 247 |
| NlaIII | CATG | 2 cut(s) | 266, 572 |
| NmuCI | GTSAC | 1 cut(s) | 506 |
| PceI | AGGCCT | 1 cut(s) | 462 |
| PciSI | GCTCTTC | 1 cut(s) | 252 |
| PctI | GAATGC | 1 cut(s) | 113 |
| PfeI | GAWTC | 3 cut(s) | 10, 370, 528 |
| Psp6I | CCWGG | 1 cut(s) | 668 |
| PspGI | CCWGG | 1 cut(s) | 668 |
| RsaI | GTAC | 2 cut(s) | 599, 689 |
| RsaNI | GTAC | 2 cut(s) | 598, 688 |
| SapI | GCTCTTC | 1 cut(s) | 252 |
| SaqAI | TTAA | 3 cut(s) | 204, 350, 560 |
| Sau3AI | GATC | 1 cut(s) | 247 |
| ScrFI | CCNGG | 1 cut(s) | 670 |
| SetI | ASST | 7 cut(s) | 41, 151, 232, 380, 580, 674, 689 |
| SfaNI | GCATC | 1 cut(s) | 500 |
| SmlI | CTYRAG | 2 cut(s) | 21, 34 |
| SmoI | CTYRAG | 2 cut(s) | 21, 34 |
| Sse9I | AATT | 8 cut(s) | 126, 166, 314, 393, 439, 482, 639, 663 |
| SseBI | AGGCCT | 1 cut(s) | 462 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SspI | AATATT | 2 cut(s) | 208, 610 |
| SspMI | CTAG | 1 cut(s) | 227 |
| StuI | AGGCCT | 1 cut(s) | 462 |
| StyD4I | CCNGG | 1 cut(s) | 668 |
| TaqI | TCGA | 1 cut(s) | 341 |
| TasI | AATT | 8 cut(s) | 126, 166, 314, 393, 439, 482, 639, 663 |
| TfiI | GAWTC | 3 cut(s) | 10, 370, 528 |
| Tru1I | TTAA | 3 cut(s) | 204, 350, 560 |
| Tru9I | TTAA | 3 cut(s) | 204, 350, 560 |
| TscAI | CASTG | 2 cut(s) | 20, 704 |
| TseFI | GTSAC | 1 cut(s) | 506 |
| Tsp45I | GTSAC | 1 cut(s) | 506 |
| TspDTI | ATGAA | 2 cut(s) | 156, 452 |
| TspGWI | ACGGA | 1 cut(s) | 527 |
| TspRI | CASTG | 2 cut(s) | 20, 704 |
| XapI | RAATTY | 4 cut(s) | 126, 166, 314, 393 |
| XspI | CTAG | 1 cut(s) | 227 |