Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 35 - 109 | 6.4e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 219 |
| AciI | CCGC | 1 cut(s) | 219 |
| AclWI | GGATC | 2 cut(s) | 240, 253 |
| AfaI | GTAC | 2 cut(s) | 61, 154 |
| AfeI | AGCGCT | 1 cut(s) | 331 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 86 |
| AgsI | TTSAA | 1 cut(s) | 359 |
| AluBI | AGCT | 6 cut(s) | 140, 253, 271, 280, 317, 381 |
| AluI | AGCT | 6 cut(s) | 140, 253, 271, 280, 317, 381 |
| Alw26I | GTCTC | 1 cut(s) | 284 |
| AlwI | GGATC | 2 cut(s) | 240, 253 |
| Aor51HI | AGCGCT | 1 cut(s) | 331 |
| AoxI | GGCC | 2 cut(s) | 133, 285 |
| ApeKI | GCWGC | 2 cut(s) | 113, 268 |
| AspLEI | GCGC | 2 cut(s) | 263, 332 |
| BamHI | GGATCC | 1 cut(s) | 245 |
| BbsI | GAAGAC | 1 cut(s) | 376 |
| BbvI | GCAGC | 2 cut(s) | 125, 280 |
| BccI | CCATC | 1 cut(s) | 143 |
| BclI | TGATCA | 3 cut(s) | 121, 163, 274 |
| BcoDI | GTCTC | 1 cut(s) | 284 |
| BfaI | CTAG | 3 cut(s) | 258, 314, 382 |
| BfmI | CTRYAG | 1 cut(s) | 281 |
| BfoI | RGCGCY | 2 cut(s) | 264, 333 |
| BisI | GCNGC | 2 cut(s) | 114, 269 |
| BlsI | GCNGC | 2 cut(s) | 115, 270 |
| BmiI | GGNNCC | 1 cut(s) | 247 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BpiI | GAAGAC | 1 cut(s) | 376 |
| Bsa29I | ATCGAT | 1 cut(s) | 336 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 86 |
| Bse118I | RCCGGY | 1 cut(s) | 79 |
| BseCI | ATCGAT | 1 cut(s) | 336 |
| BseGI | GGATG | 1 cut(s) | 154 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 86 |
| BseMII | CTCAG | 1 cut(s) | 336 |
| BseXI | GCAGC | 2 cut(s) | 125, 280 |
| BseYI | CCCAGC | 2 cut(s) | 185, 249 |
| Bsh1236I | CGCG | 1 cut(s) | 219 |
| BshFI | GGCC | 2 cut(s) | 135, 287 |
| BshVI | ATCGAT | 1 cut(s) | 336 |
| BsiSI | CCGG | 1 cut(s) | 80 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 86 |
| BsmAI | GTCTC | 1 cut(s) | 284 |
| BsnI | GGCC | 2 cut(s) | 135, 287 |
| Bsp143I | GATC | 4 cut(s) | 121, 163, 245, 274 |
| BspACI | CCGC | 1 cut(s) | 219 |
| BspANI | GGCC | 2 cut(s) | 135, 287 |
| BspCNI | CTCAG | 1 cut(s) | 337 |
| BspDI | ATCGAT | 1 cut(s) | 336 |
| BspFNI | CGCG | 1 cut(s) | 219 |
| BspLI | GGNNCC | 1 cut(s) | 247 |
| BspPI | GGATC | 2 cut(s) | 240, 253 |
| BsrFI | RCCGGY | 1 cut(s) | 79 |
| BssAI | RCCGGY | 1 cut(s) | 79 |
| BssMI | GATC | 4 cut(s) | 121, 163, 245, 274 |
| BstDEI | CTNAG | 2 cut(s) | 38, 345 |
| BstF5I | GGATG | 1 cut(s) | 154 |
| BstFNI | CGCG | 1 cut(s) | 219 |
| BstH2I | RGCGCY | 2 cut(s) | 264, 333 |
| BstHHI | GCGC | 2 cut(s) | 263, 332 |
| BstKTI | GATC | 4 cut(s) | 124, 166, 248, 277 |
| BstMAI | GTCTC | 1 cut(s) | 284 |
| BstMBI | GATC | 4 cut(s) | 121, 163, 245, 274 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 216, 277 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSFI | CTRYAG | 1 cut(s) | 281 |
| BstUI | CGCG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 2 cut(s) | 125, 280 |
| BstV2I | GAAGAC | 1 cut(s) | 376 |
| BstX2I | RGATCY | 1 cut(s) | 245 |
| BstYI | RGATCY | 1 cut(s) | 245 |
| Bsu15I | ATCGAT | 1 cut(s) | 336 |
| BsuRI | GGCC | 2 cut(s) | 135, 287 |
| BsuTUI | ATCGAT | 1 cut(s) | 336 |
| BtsCI | GGATG | 1 cut(s) | 154 |
| CfoI | GCGC | 2 cut(s) | 263, 332 |
| Cfr10I | RCCGGY | 1 cut(s) | 79 |
| ClaI | ATCGAT | 1 cut(s) | 336 |
| Csp6I | GTAC | 2 cut(s) | 60, 153 |
| CviAII | CATG | 3 cut(s) | 201, 233, 241 |
| CviJI | RGCY | 9 cut(s) | 135, 140, 185, 253, 271, 280, 287, 317, 381 |
| CviKI_1 | RGCY | 9 cut(s) | 135, 140, 185, 253, 271, 280, 287, 317, 381 |
| CviQI | GTAC | 2 cut(s) | 60, 153 |
| DdeI | CTNAG | 2 cut(s) | 38, 345 |
| DpnI | GATC | 4 cut(s) | 123, 165, 247, 276 |
| DpnII | GATC | 4 cut(s) | 121, 163, 245, 274 |
| Eco47III | AGCGCT | 1 cut(s) | 331 |
| FaeI | CATG | 3 cut(s) | 204, 236, 244 |
| FaiI | YATR | 7 cut(s) | 18, 20, 176, 194, 202, 234, 242 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 21, 53 |
| FatI | CATG | 3 cut(s) | 200, 232, 240 |
| FbaI | TGATCA | 3 cut(s) | 121, 163, 274 |
| Fnu4HI | GCNGC | 2 cut(s) | 114, 269 |
| FokI | GGATG | 1 cut(s) | 161 |
| Fsp4HI | GCNGC | 2 cut(s) | 114, 269 |
| FspBI | CTAG | 3 cut(s) | 258, 314, 382 |
| GlaI | GCGC | 2 cut(s) | 262, 331 |
| GluI | GCNGC | 2 cut(s) | 114, 269 |
| GsaI | CCCAGC | 2 cut(s) | 189, 253 |
| HaeII | RGCGCY | 2 cut(s) | 264, 333 |
| HaeIII | GGCC | 2 cut(s) | 135, 287 |
| HapII | CCGG | 1 cut(s) | 80 |
| HhaI | GCGC | 2 cut(s) | 263, 332 |
| Hin1II | CATG | 3 cut(s) | 204, 236, 244 |
| Hin6I | GCGC | 2 cut(s) | 261, 330 |
| HinP1I | GCGC | 2 cut(s) | 261, 330 |
| HinfI | GANTC | 1 cut(s) | 323 |
| HpaII | CCGG | 1 cut(s) | 80 |
| Hpy166II | GTNNAC | 1 cut(s) | 77 |
| Hpy188I | TCNGA | 2 cut(s) | 126, 346 |
| Hpy188III | TCNNGA | 2 cut(s) | 161, 167 |
| Hpy8I | GTNNAC | 1 cut(s) | 77 |
| HpyAV | CCTTC | 2 cut(s) | 80, 164 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 210, 232 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 216, 277 |
| HpyF3I | CTNAG | 2 cut(s) | 38, 345 |
| Hsp92II | CATG | 3 cut(s) | 204, 236, 244 |
| HspAI | GCGC | 2 cut(s) | 261, 330 |
| Ksp22I | TGATCA | 3 cut(s) | 121, 163, 274 |
| Kzo9I | GATC | 4 cut(s) | 121, 163, 245, 274 |
| LpnPI | CCDG | 6 cut(s) | 93, 126, 171, 263, 269, 340 |
| Lsp1109I | GCAGC | 2 cut(s) | 125, 280 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeI | CTAG | 3 cut(s) | 258, 314, 382 |
| MalI | GATC | 4 cut(s) | 123, 165, 247, 276 |
| MboI | GATC | 4 cut(s) | 121, 163, 245, 274 |
| MboII | GAAGA | 3 cut(s) | 17, 66, 381 |
| MfeI | CAATTG | 1 cut(s) | 359 |
| MflI | RGATCY | 1 cut(s) | 245 |
| MluCI | AATT | 2 cut(s) | 8, 359 |
| MlyI | GAGTC | 1 cut(s) | 332 |
| MnlI | CCTC | 2 cut(s) | 60, 125 |
| MseI | TTAA | 1 cut(s) | 96 |
| MspI | CCGG | 1 cut(s) | 80 |
| MunI | CAATTG | 1 cut(s) | 359 |
| MvnI | CGCG | 1 cut(s) | 219 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 216, 277 |
| NdeII | GATC | 4 cut(s) | 121, 163, 245, 274 |
| NlaIII | CATG | 3 cut(s) | 204, 236, 244 |
| NlaIV | GGNNCC | 1 cut(s) | 247 |
| NmeAIII | GCCGAG | 2 cut(s) | 161, 313 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PkrI | GCNGC | 2 cut(s) | 115, 270 |
| PleI | GAGTC | 1 cut(s) | 331 |
| PpsI | GAGTC | 1 cut(s) | 331 |
| PspFI | CCCAGC | 2 cut(s) | 185, 249 |
| PspN4I | GGNNCC | 1 cut(s) | 247 |
| PsuI | RGATCY | 1 cut(s) | 245 |
| RsaI | GTAC | 2 cut(s) | 61, 154 |
| RsaNI | GTAC | 2 cut(s) | 60, 153 |
| SaqAI | TTAA | 1 cut(s) | 96 |
| SatI | GCNGC | 2 cut(s) | 114, 269 |
| Sau3AI | GATC | 4 cut(s) | 121, 163, 245, 274 |
| SchI | GAGTC | 1 cut(s) | 332 |
| SetI | ASST | 8 cut(s) | 71, 142, 175, 255, 273, 282, 319, 383 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SfcI | CTRYAG | 1 cut(s) | 281 |
| Sse9I | AATT | 2 cut(s) | 8, 359 |
| SsiI | CCGC | 1 cut(s) | 219 |
| SspMI | CTAG | 3 cut(s) | 258, 314, 382 |
| TaqI | TCGA | 1 cut(s) | 336 |
| TasI | AATT | 2 cut(s) | 8, 359 |
| Tru1I | TTAA | 1 cut(s) | 96 |
| Tru9I | TTAA | 1 cut(s) | 96 |
| TseI | GCWGC | 2 cut(s) | 113, 268 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XspI | CTAG | 3 cut(s) | 258, 314, 382 |