ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 25 |
| AccIII | TCCGGA | 1 cut(s) | 192 |
| AciI | CCGC | 1 cut(s) | 85 |
| AcsI | RAATTY | 1 cut(s) | 132 |
| AcvI | CACGTG | 2 cut(s) | 147, 348 |
| AfaI | GTAC | 1 cut(s) | 18 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 91, 172, 199, 348 |
| AflIII | ACRYGT | 1 cut(s) | 345 |
| AgsI | TTSAA | 2 cut(s) | 283, 312 |
| AjnI | CCWGG | 1 cut(s) | 330 |
| AluBI | AGCT | 3 cut(s) | 55, 205, 376 |
| AluI | AGCT | 3 cut(s) | 55, 205, 376 |
| Alw26I | GTCTC | 2 cut(s) | 267, 330 |
| Aor13HI | TCCGGA | 1 cut(s) | 192 |
| ApeKI | GCWGC | 1 cut(s) | 87 |
| ApoI | RAATTY | 1 cut(s) | 132 |
| AsuHPI | GGTGA | 1 cut(s) | 317 |
| BaeGI | GKGCMC | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 25 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 275, 307 |
| BbrPI | CACGTG | 2 cut(s) | 147, 348 |
| BbvI | GCAGC | 1 cut(s) | 74 |
| BciT130I | CCWGG | 1 cut(s) | 332 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 2 cut(s) | 267, 330 |
| BfaI | CTAG | 3 cut(s) | 185, 321, 391 |
| BisI | GCNGC | 1 cut(s) | 88 |
| BlsI | GCNGC | 1 cut(s) | 89 |
| Bme1390I | CCNGG | 1 cut(s) | 332 |
| BmiI | GGNNCC | 1 cut(s) | 27 |
| BmrFI | CCNGG | 1 cut(s) | 332 |
| BmsI | GCATC | 2 cut(s) | 73, 262 |
| BsaAI | YACGTR | 2 cut(s) | 147, 348 |
| BsaJI | CCNNGG | 1 cut(s) | 331 |
| BsaWI | WCCGGW | 1 cut(s) | 192 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 91, 172, 199, 348 |
| BseAI | TCCGGA | 1 cut(s) | 192 |
| BseBI | CCWGG | 1 cut(s) | 332 |
| BseDI | CCNNGG | 1 cut(s) | 331 |
| BseGI | GGATG | 1 cut(s) | 253 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 91, 172, 199, 348 |
| BseMII | CTCAG | 2 cut(s) | 87, 249 |
| BseRI | GAGGAG | 2 cut(s) | 188, 367 |
| BseSI | GKGCMC | 1 cut(s) | 30 |
| BseXI | GCAGC | 1 cut(s) | 74 |
| BshNI | GGYRCC | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 193 |
| BslFI | GGGAC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 91, 172, 199, 348 |
| BsmAI | GTCTC | 2 cut(s) | 267, 330 |
| BsmFI | GGGAC | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 1 cut(s) | 30 |
| Bsp13I | TCCGGA | 1 cut(s) | 192 |
| Bsp1407I | TGTACA | 1 cut(s) | 16 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspACI | CCGC | 1 cut(s) | 85 |
| BspCNI | CTCAG | 2 cut(s) | 88, 250 |
| BspEI | TCCGGA | 1 cut(s) | 192 |
| BspHI | TCATGA | 1 cut(s) | 39 |
| BspLI | GGNNCC | 1 cut(s) | 27 |
| BspT107I | GGYRCC | 1 cut(s) | 25 |
| BsrGI | TGTACA | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 331 |
| BssMI | GATC | 1 cut(s) | 3 |
| Bst2UI | CCWGG | 1 cut(s) | 332 |
| Bst4CI | ACNGT | 1 cut(s) | 305 |
| BstAUI | TGTACA | 1 cut(s) | 16 |
| BstBAI | YACGTR | 2 cut(s) | 147, 348 |
| BstC8I | GCNNGC | 1 cut(s) | 318 |
| BstDEI | CTNAG | 3 cut(s) | 96, 223, 258 |
| BstF5I | GGATG | 1 cut(s) | 253 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMAI | GTCTC | 2 cut(s) | 267, 330 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 61, 224 |
| BstNI | CCWGG | 1 cut(s) | 332 |
| BstNSI | RCATGY | 1 cut(s) | 320 |
| BstSCI | CCNGG | 1 cut(s) | 330 |
| BstSLI | GKGCMC | 1 cut(s) | 30 |
| BstV1I | GCAGC | 1 cut(s) | 74 |
| BtsCI | GGATG | 1 cut(s) | 253 |
| Cac8I | GCNNGC | 1 cut(s) | 318 |
| CciI | TCATGA | 1 cut(s) | 39 |
| CseI | GACGC | 1 cut(s) | 151 |
| Csp6I | GTAC | 1 cut(s) | 17 |
| CviAII | CATG | 3 cut(s) | 40, 91, 317 |
| CviJI | RGCY | 7 cut(s) | 55, 95, 142, 205, 227, 376, 390 |
| CviKI_1 | RGCY | 7 cut(s) | 55, 95, 142, 205, 227, 376, 390 |
| CviQI | GTAC | 1 cut(s) | 17 |
| DdeI | CTNAG | 3 cut(s) | 96, 223, 258 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| Eco72I | CACGTG | 2 cut(s) | 147, 348 |
| EcoRII | CCWGG | 1 cut(s) | 330 |
| EcoT22I | ATGCAT | 1 cut(s) | 318 |
| FaeI | CATG | 3 cut(s) | 43, 94, 320 |
| FaiI | YATR | 6 cut(s) | 34, 36, 41, 92, 200, 318 |
| FaqI | GGGAC | 1 cut(s) | 149 |
| FatI | CATG | 3 cut(s) | 39, 90, 316 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 1 cut(s) | 88 |
| FokI | GGATG | 1 cut(s) | 240 |
| Fsp4HI | GCNGC | 1 cut(s) | 88 |
| FspBI | CTAG | 3 cut(s) | 185, 321, 391 |
| GluI | GCNGC | 1 cut(s) | 88 |
| HapII | CCGG | 1 cut(s) | 193 |
| HgaI | GACGC | 1 cut(s) | 151 |
| Hin1II | CATG | 3 cut(s) | 43, 94, 320 |
| HinfI | GANTC | 4 cut(s) | 113, 260, 308, 338 |
| HpaII | CCGG | 1 cut(s) | 193 |
| HphI | GGTGA | 1 cut(s) | 317 |
| Hpy166II | GTNNAC | 2 cut(s) | 182, 328 |
| Hpy188I | TCNGA | 1 cut(s) | 118 |
| Hpy188III | TCNNGA | 5 cut(s) | 40, 74, 166, 193, 257 |
| Hpy8I | GTNNAC | 2 cut(s) | 182, 328 |
| HpyAV | CCTTC | 2 cut(s) | 163, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 305 |
| HpyCH4IV | ACGT | 2 cut(s) | 146, 347 |
| HpyCH4V | TGCA | 3 cut(s) | 82, 90, 316 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 61, 224 |
| HpyF3I | CTNAG | 3 cut(s) | 96, 223, 258 |
| HpySE526I | ACGT | 2 cut(s) | 146, 347 |
| Hsp92II | CATG | 3 cut(s) | 43, 94, 320 |
| Kpn2I | TCCGGA | 1 cut(s) | 192 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LmnI | GCTCC | 1 cut(s) | 202 |
| LpnPI | CCDG | 5 cut(s) | 206, 218, 270, 317, 344 |
| Lsp1109I | GCAGC | 1 cut(s) | 74 |
| LweI | GCATC | 2 cut(s) | 73, 262 |
| MaeI | CTAG | 3 cut(s) | 185, 321, 391 |
| MaeII | ACGT | 2 cut(s) | 146, 347 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MhlI | GDGCHC | 1 cut(s) | 30 |
| MluCI | AATT | 2 cut(s) | 77, 132 |
| MlyI | GAGTC | 2 cut(s) | 269, 332 |
| MmeI | TCCRAC | 1 cut(s) | 218 |
| MnlI | CCTC | 5 cut(s) | 166, 169, 234, 243, 345 |
| Mph1103I | ATGCAT | 1 cut(s) | 318 |
| MroI | TCCGGA | 1 cut(s) | 192 |
| MseI | TTAA | 2 cut(s) | 210, 359 |
| MslI | CAYNNNNRTG | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 1 cut(s) | 87 |
| MspI | CCGG | 1 cut(s) | 193 |
| MspR9I | CCNGG | 1 cut(s) | 332 |
| MvaI | CCWGG | 1 cut(s) | 332 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 61, 224 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 3 cut(s) | 43, 94, 320 |
| NlaIV | GGNNCC | 1 cut(s) | 27 |
| NsiI | ATGCAT | 1 cut(s) | 318 |
| NspI | RCATGY | 1 cut(s) | 320 |
| PaeI | GCATGC | 1 cut(s) | 320 |
| PagI | TCATGA | 1 cut(s) | 39 |
| PfeI | GAWTC | 2 cut(s) | 113, 308 |
| PkrI | GCNGC | 1 cut(s) | 89 |
| PleI | GAGTC | 2 cut(s) | 268, 332 |
| PmaCI | CACGTG | 2 cut(s) | 147, 348 |
| PmlI | CACGTG | 2 cut(s) | 147, 348 |
| PpsI | GAGTC | 2 cut(s) | 268, 332 |
| Ppu21I | YACGTR | 2 cut(s) | 147, 348 |
| Psp6I | CCWGG | 1 cut(s) | 330 |
| PspCI | CACGTG | 2 cut(s) | 147, 348 |
| PspGI | CCWGG | 1 cut(s) | 330 |
| PspN4I | GGNNCC | 1 cut(s) | 27 |
| RsaI | GTAC | 1 cut(s) | 18 |
| RsaNI | GTAC | 1 cut(s) | 17 |
| RseI | CAYNNNNRTG | 1 cut(s) | 321 |
| SaqAI | TTAA | 2 cut(s) | 210, 359 |
| SatI | GCNGC | 1 cut(s) | 88 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| SchI | GAGTC | 2 cut(s) | 269, 332 |
| ScrFI | CCNGG | 1 cut(s) | 332 |
| SduI | GDGCHC | 1 cut(s) | 30 |
| SetI | ASST | 8 cut(s) | 57, 149, 190, 207, 245, 333, 350, 378 |
| SfaNI | GCATC | 2 cut(s) | 73, 262 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 321 |
| SphI | GCATGC | 1 cut(s) | 320 |
| Sse9I | AATT | 2 cut(s) | 77, 132 |
| SsiI | CCGC | 1 cut(s) | 85 |
| SspMI | CTAG | 3 cut(s) | 185, 321, 391 |
| StyD4I | CCNGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 1 cut(s) | 305 |
| TaiI | ACGT | 2 cut(s) | 149, 350 |
| TasI | AATT | 2 cut(s) | 77, 132 |
| TatI | WGTACW | 1 cut(s) | 16 |
| TfiI | GAWTC | 2 cut(s) | 113, 308 |
| Tru1I | TTAA | 2 cut(s) | 210, 359 |
| Tru9I | TTAA | 2 cut(s) | 210, 359 |
| TseI | GCWGC | 1 cut(s) | 87 |
| TspDTI | ATGAA | 2 cut(s) | 125, 377 |
| XapI | RAATTY | 1 cut(s) | 132 |
| XceI | RCATGY | 1 cut(s) | 320 |
| XspI | CTAG | 3 cut(s) | 185, 321, 391 |
| Zsp2I | ATGCAT | 1 cut(s) | 318 |