ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 330 |
| AccI | GTMKAC | 1 cut(s) | 610 |
| AccII | CGCG | 1 cut(s) | 68 |
| AciI | CCGC | 2 cut(s) | 5, 773 |
| AclWI | GGATC | 1 cut(s) | 287 |
| AcoI | YGGCCR | 1 cut(s) | 594 |
| AcsI | RAATTY | 1 cut(s) | 529 |
| AdeI | CACNNNGTG | 1 cut(s) | 302 |
| AfaI | GTAC | 1 cut(s) | 378 |
| AgeI | ACCGGT | 1 cut(s) | 613 |
| AgsI | TTSAA | 7 cut(s) | 281, 347, 392, 418, 528, 782, 954 |
| AhlI | ACTAGT | 1 cut(s) | 379 |
| AjnI | CCWGG | 1 cut(s) | 298 |
| AluBI | AGCT | 2 cut(s) | 679, 785 |
| AluI | AGCT | 2 cut(s) | 679, 785 |
| AlwI | GGATC | 1 cut(s) | 287 |
| AoxI | GGCC | 2 cut(s) | 498, 594 |
| ApoI | RAATTY | 1 cut(s) | 529 |
| AsiGI | ACCGGT | 1 cut(s) | 613 |
| AspLEI | GCGC | 1 cut(s) | 881 |
| AspS9I | GGNCC | 1 cut(s) | 357 |
| AsuC2I | CCSGG | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 2 cut(s) | 167, 227 |
| AsuII | TTCGAA | 1 cut(s) | 541 |
| AvaII | GGWCC | 1 cut(s) | 357 |
| AxyI | CCTNAGG | 1 cut(s) | 362 |
| BaeGI | GKGCMC | 1 cut(s) | 333 |
| BalI | TGGCCA | 1 cut(s) | 596 |
| BanI | GGYRCC | 1 cut(s) | 330 |
| BbsI | GAAGAC | 1 cut(s) | 204 |
| BccI | CCATC | 4 cut(s) | 29, 246, 321, 586 |
| BciT130I | CCWGG | 1 cut(s) | 300 |
| BciVI | GTATCC | 1 cut(s) | 887 |
| BclI | TGATCA | 2 cut(s) | 142, 243 |
| BcnI | CCSGG | 1 cut(s) | 476 |
| BcuI | ACTAGT | 1 cut(s) | 379 |
| BfaI | CTAG | 2 cut(s) | 252, 380 |
| BfmI | CTRYAG | 1 cut(s) | 126 |
| BfuI | GTATCC | 1 cut(s) | 887 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 2 cut(s) | 300, 476 |
| Bme18I | GGWCC | 1 cut(s) | 357 |
| BmgT120I | GGNCC | 1 cut(s) | 357 |
| BmiI | GGNNCC | 2 cut(s) | 332, 359 |
| BmrFI | CCNGG | 2 cut(s) | 300, 476 |
| BmsI | GCATC | 1 cut(s) | 77 |
| BpiI | GAAGAC | 1 cut(s) | 204 |
| Bpu10I | CCTNAGC | 1 cut(s) | 462 |
| Bpu14I | TTCGAA | 1 cut(s) | 541 |
| BpuMI | CCSGG | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 1 cut(s) | 184 |
| BsaWI | WCCGGW | 1 cut(s) | 613 |
| Bse118I | RCCGGY | 1 cut(s) | 613 |
| Bse1I | ACTGG | 1 cut(s) | 340 |
| Bse21I | CCTNAGG | 1 cut(s) | 362 |
| BseBI | CCWGG | 1 cut(s) | 300 |
| BseDI | CCNNGG | 1 cut(s) | 184 |
| BseGI | GGATG | 3 cut(s) | 25, 92, 208 |
| BseMII | CTCAG | 1 cut(s) | 353 |
| BseNI | ACTGG | 1 cut(s) | 340 |
| BseSI | GKGCMC | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 1 cut(s) | 68 |
| BshFI | GGCC | 2 cut(s) | 500, 596 |
| BshNI | GGYRCC | 1 cut(s) | 330 |
| BshTI | ACCGGT | 1 cut(s) | 613 |
| BsiSI | CCGG | 2 cut(s) | 475, 614 |
| BsmI | GAATGC | 1 cut(s) | 400 |
| BsnI | GGCC | 2 cut(s) | 500, 596 |
| Bsp119I | TTCGAA | 1 cut(s) | 541 |
| Bsp1286I | GDGCHC | 1 cut(s) | 333 |
| Bsp143I | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| Bsp68I | TCGCGA | 1 cut(s) | 68 |
| BspACI | CCGC | 2 cut(s) | 5, 773 |
| BspANI | GGCC | 2 cut(s) | 500, 596 |
| BspCNI | CTCAG | 1 cut(s) | 354 |
| BspFNI | CGCG | 1 cut(s) | 68 |
| BspLI | GGNNCC | 2 cut(s) | 332, 359 |
| BspPI | GGATC | 1 cut(s) | 287 |
| BspQI | GCTCTTC | 1 cut(s) | 165 |
| BspT104I | TTCGAA | 1 cut(s) | 541 |
| BspT107I | GGYRCC | 1 cut(s) | 330 |
| BsrFI | RCCGGY | 1 cut(s) | 613 |
| BsrI | ACTGG | 1 cut(s) | 340 |
| BssAI | RCCGGY | 1 cut(s) | 613 |
| BssECI | CCNNGG | 1 cut(s) | 184 |
| BssMI | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| BssNAI | GTATAC | 1 cut(s) | 611 |
| Bst1107I | GTATAC | 1 cut(s) | 611 |
| Bst2UI | CCWGG | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 2 cut(s) | 127, 335 |
| Bst6I | CTCTTC | 3 cut(s) | 71, 165, 342 |
| BstBI | TTCGAA | 1 cut(s) | 541 |
| BstC8I | GCNNGC | 1 cut(s) | 625 |
| BstDEI | CTNAG | 2 cut(s) | 362, 462 |
| BstF5I | GGATG | 3 cut(s) | 25, 92, 208 |
| BstFNI | CGCG | 1 cut(s) | 68 |
| BstHHI | GCGC | 1 cut(s) | 881 |
| BstKTI | GATC | 5 cut(s) | 145, 246, 295, 427, 700 |
| BstMBI | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 676 |
| BstNI | CCWGG | 1 cut(s) | 300 |
| BstNSI | RCATGY | 1 cut(s) | 227 |
| BstSCI | CCNGG | 2 cut(s) | 298, 474 |
| BstSFI | CTRYAG | 1 cut(s) | 126 |
| BstSLI | GKGCMC | 1 cut(s) | 333 |
| BstUI | CGCG | 1 cut(s) | 68 |
| BstV2I | GAAGAC | 1 cut(s) | 204 |
| BstX2I | RGATCY | 1 cut(s) | 292 |
| BstYI | RGATCY | 1 cut(s) | 292 |
| BstZ17I | GTATAC | 1 cut(s) | 611 |
| Bsu36I | CCTNAGG | 1 cut(s) | 362 |
| BsuI | GTATCC | 1 cut(s) | 887 |
| BsuRI | GGCC | 2 cut(s) | 500, 596 |
| BtsCI | GGATG | 3 cut(s) | 25, 92, 208 |
| BtsIMutI | CAGTG | 2 cut(s) | 123, 696 |
| BtuMI | TCGCGA | 1 cut(s) | 68 |
| Cac8I | GCNNGC | 1 cut(s) | 625 |
| CfoI | GCGC | 1 cut(s) | 881 |
| Cfr10I | RCCGGY | 1 cut(s) | 613 |
| Cfr13I | GGNCC | 1 cut(s) | 357 |
| CsiI | ACCWGGT | 1 cut(s) | 298 |
| Csp6I | GTAC | 1 cut(s) | 377 |
| CspAI | ACCGGT | 1 cut(s) | 613 |
| CviAII | CATG | 6 cut(s) | 224, 502, 547, 629, 695, 815 |
| CviJI | RGCY | 9 cut(s) | 161, 461, 467, 500, 596, 679, 715, 785, 943 |
| CviKI_1 | RGCY | 9 cut(s) | 161, 461, 467, 500, 596, 679, 715, 785, 943 |
| CviQI | GTAC | 1 cut(s) | 377 |
| DdeI | CTNAG | 2 cut(s) | 362, 462 |
| DpnI | GATC | 5 cut(s) | 144, 245, 294, 426, 699 |
| DpnII | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| DraIII | CACNNNGTG | 1 cut(s) | 302 |
| EaeI | YGGCCR | 1 cut(s) | 594 |
| Eam1104I | CTCTTC | 3 cut(s) | 71, 165, 342 |
| EarI | CTCTTC | 3 cut(s) | 71, 165, 342 |
| Eco47I | GGWCC | 1 cut(s) | 357 |
| Eco81I | CCTNAGG | 1 cut(s) | 362 |
| EcoRII | CCWGG | 1 cut(s) | 298 |
| EcoT22I | ATGCAT | 1 cut(s) | 402 |
| FaeI | CATG | 6 cut(s) | 227, 505, 550, 632, 698, 818 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 162, 194 |
| FatI | CATG | 6 cut(s) | 223, 501, 546, 628, 694, 814 |
| FbaI | TGATCA | 2 cut(s) | 142, 243 |
| FblI | GTMKAC | 1 cut(s) | 610 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 3 cut(s) | 32, 99, 215 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 2 cut(s) | 252, 380 |
| GlaI | GCGC | 1 cut(s) | 880 |
| GluI | GCNGC | 1 cut(s) | 6 |
| HaeIII | GGCC | 2 cut(s) | 500, 596 |
| HapII | CCGG | 2 cut(s) | 475, 614 |
| HhaI | GCGC | 1 cut(s) | 881 |
| Hin1II | CATG | 6 cut(s) | 227, 505, 550, 632, 698, 818 |
| Hin6I | GCGC | 1 cut(s) | 879 |
| HinP1I | GCGC | 1 cut(s) | 879 |
| HinfI | GANTC | 1 cut(s) | 543 |
| HpaII | CCGG | 2 cut(s) | 475, 614 |
| HphI | GGTGA | 2 cut(s) | 167, 227 |
| Hpy166II | GTNNAC | 1 cut(s) | 611 |
| Hpy188I | TCNGA | 2 cut(s) | 243, 259 |
| Hpy188III | TCNNGA | 5 cut(s) | 67, 278, 574, 742, 954 |
| Hpy8I | GTNNAC | 1 cut(s) | 611 |
| Hpy99I | CGWCG | 1 cut(s) | 55 |
| HpyAV | CCTTC | 4 cut(s) | 20, 77, 412, 721 |
| HpyCH4III | ACNGT | 2 cut(s) | 127, 335 |
| HpyCH4V | TGCA | 5 cut(s) | 223, 400, 559, 694, 834 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 676 |
| HpyF3I | CTNAG | 2 cut(s) | 362, 462 |
| Hsp92II | CATG | 6 cut(s) | 227, 505, 550, 632, 698, 818 |
| HspAI | GCGC | 1 cut(s) | 879 |
| Ksp22I | TGATCA | 2 cut(s) | 142, 243 |
| Kzo9I | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| LguI | GCTCTTC | 1 cut(s) | 165 |
| LmnI | GCTCC | 1 cut(s) | 676 |
| LpnPI | CCDG | 8 cut(s) | 285, 312, 353, 374, 488, 627, 727, 732 |
| LweI | GCATC | 1 cut(s) | 77 |
| MabI | ACCWGGT | 1 cut(s) | 298 |
| MaeI | CTAG | 2 cut(s) | 252, 380 |
| MaeIII | GTNAC | 2 cut(s) | 233, 433 |
| MalI | GATC | 5 cut(s) | 144, 245, 294, 426, 699 |
| MboI | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| MboII | GAAGA | 5 cut(s) | 88, 182, 204, 359, 837 |
| MflI | RGATCY | 1 cut(s) | 292 |
| MhlI | GDGCHC | 1 cut(s) | 333 |
| MlsI | TGGCCA | 1 cut(s) | 596 |
| MluCI | AATT | 8 cut(s) | 30, 413, 449, 529, 685, 839, 859, 882 |
| MluNI | TGGCCA | 1 cut(s) | 596 |
| MmeI | TCCRAC | 1 cut(s) | 704 |
| Mox20I | TGGCCA | 1 cut(s) | 596 |
| Mph1103I | ATGCAT | 1 cut(s) | 402 |
| MscI | TGGCCA | 1 cut(s) | 596 |
| MseI | TTAA | 8 cut(s) | 101, 114, 408, 717, 767, 885, 905, 970 |
| MslI | CAYNNNNRTG | 1 cut(s) | 587 |
| Msp20I | TGGCCA | 1 cut(s) | 596 |
| MspI | CCGG | 2 cut(s) | 475, 614 |
| MspR9I | CCNGG | 2 cut(s) | 300, 476 |
| Mva1269I | GAATGC | 1 cut(s) | 400 |
| MvaI | CCWGG | 1 cut(s) | 300 |
| MvnI | CGCG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 676 |
| NciI | CCSGG | 1 cut(s) | 476 |
| NdeII | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| NlaIII | CATG | 6 cut(s) | 227, 505, 550, 632, 698, 818 |
| NlaIV | GGNNCC | 2 cut(s) | 332, 359 |
| NmuCI | GTSAC | 2 cut(s) | 233, 433 |
| NruI | TCGCGA | 1 cut(s) | 68 |
| NsiI | ATGCAT | 1 cut(s) | 402 |
| NspI | RCATGY | 1 cut(s) | 227 |
| NspV | TTCGAA | 1 cut(s) | 541 |
| PciSI | GCTCTTC | 1 cut(s) | 165 |
| PctI | GAATGC | 1 cut(s) | 400 |
| PfeI | GAWTC | 1 cut(s) | 543 |
| PinAI | ACCGGT | 1 cut(s) | 613 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| Psp6I | CCWGG | 1 cut(s) | 298 |
| PspGI | CCWGG | 1 cut(s) | 298 |
| PspN4I | GGNNCC | 2 cut(s) | 332, 359 |
| PspPI | GGNCC | 1 cut(s) | 357 |
| PsuI | RGATCY | 1 cut(s) | 292 |
| RruI | TCGCGA | 1 cut(s) | 68 |
| RsaI | GTAC | 1 cut(s) | 378 |
| RsaNI | GTAC | 1 cut(s) | 377 |
| RseI | CAYNNNNRTG | 1 cut(s) | 587 |
| SapI | GCTCTTC | 1 cut(s) | 165 |
| SaqAI | TTAA | 8 cut(s) | 101, 114, 408, 717, 767, 885, 905, 970 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 5 cut(s) | 142, 243, 292, 424, 697 |
| Sau96I | GGNCC | 1 cut(s) | 357 |
| ScrFI | CCNGG | 2 cut(s) | 300, 476 |
| SduI | GDGCHC | 1 cut(s) | 333 |
| SetI | ASST | 8 cut(s) | 190, 271, 301, 520, 646, 681, 762, 787 |
| SexAI | ACCWGGT | 1 cut(s) | 298 |
| SfaNI | GCATC | 1 cut(s) | 77 |
| SfcI | CTRYAG | 1 cut(s) | 126 |
| SfuI | TTCGAA | 1 cut(s) | 541 |
| SinI | GGWCC | 1 cut(s) | 357 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 587 |
| SpeI | ACTAGT | 1 cut(s) | 379 |
| Sse9I | AATT | 8 cut(s) | 30, 413, 449, 529, 685, 839, 859, 882 |
| SsiI | CCGC | 2 cut(s) | 5, 773 |
| SspI | AATATT | 1 cut(s) | 107 |
| SspMI | CTAG | 2 cut(s) | 252, 380 |
| StyD4I | CCNGG | 2 cut(s) | 298, 474 |
| TaaI | ACNGT | 2 cut(s) | 127, 335 |
| TaqI | TCGA | 4 cut(s) | 541, 575, 664, 961 |
| TaqII | GACCGA | 1 cut(s) | 198 |
| TasI | AATT | 8 cut(s) | 30, 413, 449, 529, 685, 839, 859, 882 |
| TatI | WGTACW | 1 cut(s) | 376 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 1 cut(s) | 543 |
| Tru1I | TTAA | 8 cut(s) | 101, 114, 408, 717, 767, 885, 905, 970 |
| Tru9I | TTAA | 8 cut(s) | 101, 114, 408, 717, 767, 885, 905, 970 |
| TscAI | CASTG | 2 cut(s) | 130, 696 |
| TseFI | GTSAC | 2 cut(s) | 233, 433 |
| Tsp45I | GTSAC | 2 cut(s) | 233, 433 |
| TspDTI | ATGAA | 3 cut(s) | 645, 803, 924 |
| TspGWI | ACGGA | 1 cut(s) | 394 |
| TspRI | CASTG | 2 cut(s) | 130, 696 |
| VpaK11BI | GGWCC | 1 cut(s) | 357 |
| XapI | RAATTY | 1 cut(s) | 529 |
| XceI | RCATGY | 1 cut(s) | 227 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 454 |
| XmiI | GTMKAC | 1 cut(s) | 610 |
| XspI | CTAG | 2 cut(s) | 252, 380 |
| Zsp2I | ATGCAT | 1 cut(s) | 402 |