ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cofilin_ADF | PF00241 | 7 - 138 | 1e-38 | Cofilin/tropomyosin-type actin-binding protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 137, 150, 368 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 348 |
| AfaI | GTAC | 1 cut(s) | 95 |
| AgsI | TTSAA | 2 cut(s) | 49, 331 |
| AjnI | CCWGG | 1 cut(s) | 266 |
| AluBI | AGCT | 4 cut(s) | 61, 315, 340, 417 |
| AluI | AGCT | 4 cut(s) | 61, 315, 340, 417 |
| Alw21I | GWGCWC | 2 cut(s) | 33, 63 |
| Alw26I | GTCTC | 1 cut(s) | 276 |
| Alw44I | GTGCAC | 1 cut(s) | 29 |
| AlwI | GGATC | 3 cut(s) | 137, 150, 368 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 17 |
| AoxI | GGCC | 2 cut(s) | 3, 388 |
| ApaLI | GTGCAC | 1 cut(s) | 29 |
| ApeKI | GCWGC | 1 cut(s) | 11 |
| ApoI | RAATTY | 1 cut(s) | 348 |
| AspS9I | GGNCC | 1 cut(s) | 75 |
| AsuHPI | GGTGA | 1 cut(s) | 301 |
| AvaII | GGWCC | 1 cut(s) | 75 |
| BaeGI | GKGCMC | 1 cut(s) | 33 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 142 |
| BanII | GRGCYC | 1 cut(s) | 63 |
| Bbv12I | GWGCWC | 2 cut(s) | 33, 63 |
| BbvI | GCAGC | 1 cut(s) | 23 |
| BccI | CCATC | 2 cut(s) | 338, 385 |
| BceAI | ACGGC | 2 cut(s) | 180, 393 |
| BciT130I | CCWGG | 1 cut(s) | 268 |
| BcoDI | GTCTC | 1 cut(s) | 276 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 1 cut(s) | 268 |
| Bme18I | GGWCC | 1 cut(s) | 75 |
| BmgT120I | GGNCC | 1 cut(s) | 75 |
| BmiI | GGNNCC | 1 cut(s) | 144 |
| BmrFI | CCNGG | 1 cut(s) | 268 |
| BmrI | ACTGGG | 1 cut(s) | 147 |
| BmsI | GCATC | 1 cut(s) | 23 |
| BmuI | ACTGGG | 1 cut(s) | 147 |
| BpmI | CTGGAG | 1 cut(s) | 77 |
| BpuEI | CTTGAG | 1 cut(s) | 47 |
| BsaI | GGTCTC | 1 cut(s) | 276 |
| Bse1I | ACTGG | 1 cut(s) | 142 |
| Bse3DI | GCAATG | 1 cut(s) | 261 |
| BseBI | CCWGG | 1 cut(s) | 268 |
| BseMI | GCAATG | 1 cut(s) | 261 |
| BseMII | CTCAG | 1 cut(s) | 372 |
| BseNI | ACTGG | 1 cut(s) | 142 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BseSI | GKGCMC | 1 cut(s) | 33 |
| BseXI | GCAGC | 1 cut(s) | 23 |
| BshFI | GGCC | 2 cut(s) | 5, 390 |
| BsiHKAI | GWGCWC | 2 cut(s) | 33, 63 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BsmAI | GTCTC | 1 cut(s) | 276 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsmI | GAATGC | 1 cut(s) | 197 |
| BsnI | GGCC | 2 cut(s) | 5, 390 |
| Bso31I | GGTCTC | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 2 cut(s) | 33, 63 |
| Bsp1407I | TGTACA | 1 cut(s) | 93 |
| Bsp143I | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| BspANI | GGCC | 2 cut(s) | 5, 390 |
| BspCNI | CTCAG | 1 cut(s) | 373 |
| BspLI | GGNNCC | 1 cut(s) | 144 |
| BspPI | GGATC | 3 cut(s) | 137, 150, 368 |
| BspTNI | GGTCTC | 1 cut(s) | 276 |
| BsrDI | GCAATG | 1 cut(s) | 261 |
| BsrGI | TGTACA | 1 cut(s) | 93 |
| BsrI | ACTGG | 1 cut(s) | 142 |
| BssMI | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| Bst2UI | CCWGG | 1 cut(s) | 268 |
| BstAUI | TGTACA | 1 cut(s) | 93 |
| BstC8I | GCNNGC | 3 cut(s) | 313, 366, 415 |
| BstDEI | CTNAG | 1 cut(s) | 381 |
| BstKTI | GATC | 6 cut(s) | 86, 102, 145, 306, 357, 376 |
| BstMAI | GTCTC | 1 cut(s) | 276 |
| BstMBI | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 414 |
| BstNI | CCWGG | 1 cut(s) | 268 |
| BstSCI | CCNGG | 1 cut(s) | 266 |
| BstSLI | GKGCMC | 1 cut(s) | 33 |
| BstV1I | GCAGC | 1 cut(s) | 23 |
| BstX2I | RGATCY | 1 cut(s) | 142 |
| BstYI | RGATCY | 1 cut(s) | 142 |
| BsuRI | GGCC | 2 cut(s) | 5, 390 |
| Cac8I | GCNNGC | 3 cut(s) | 313, 366, 415 |
| CaiI | CAGNNNCTG | 1 cut(s) | 17 |
| Cfr13I | GGNCC | 1 cut(s) | 75 |
| Csp6I | GTAC | 1 cut(s) | 94 |
| CviJI | RGCY | 9 cut(s) | 5, 26, 61, 177, 315, 340, 390, 408, 417 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 26, 61, 177, 315, 340, 390, 408, 417 |
| CviQI | GTAC | 1 cut(s) | 94 |
| DdeI | CTNAG | 1 cut(s) | 381 |
| DpnI | GATC | 6 cut(s) | 85, 101, 144, 305, 356, 375 |
| DpnII | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Ecl136II | GAGCTC | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 1 cut(s) | 63 |
| Eco31I | GGTCTC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 1 cut(s) | 75 |
| Eco53kI | GAGCTC | 1 cut(s) | 61 |
| EcoICRI | GAGCTC | 1 cut(s) | 61 |
| EcoO109I | RGGNCCY | 1 cut(s) | 75 |
| EcoRI | GAATTC | 1 cut(s) | 348 |
| EcoRII | CCWGG | 1 cut(s) | 266 |
| EcoT38I | GRGCYC | 1 cut(s) | 63 |
| FaiI | YATR | 4 cut(s) | 23, 159, 201, 309 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| FriOI | GRGCYC | 1 cut(s) | 63 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| GluI | GCNGC | 1 cut(s) | 12 |
| GsuI | CTGGAG | 1 cut(s) | 77 |
| HaeIII | GGCC | 2 cut(s) | 5, 390 |
| HinfI | GANTC | 1 cut(s) | 327 |
| HphI | GGTGA | 1 cut(s) | 301 |
| Hpy166II | GTNNAC | 2 cut(s) | 31, 94 |
| Hpy188I | TCNGA | 3 cut(s) | 187, 354, 382 |
| Hpy188III | TCNNGA | 4 cut(s) | 56, 64, 275, 331 |
| Hpy8I | GTNNAC | 2 cut(s) | 31, 94 |
| HpyAV | CCTTC | 2 cut(s) | 188, 192 |
| HpyCH4V | TGCA | 5 cut(s) | 11, 31, 42, 311, 364 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 414 |
| HpyF3I | CTNAG | 1 cut(s) | 381 |
| Kzo9I | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| LmnI | GCTCC | 1 cut(s) | 58 |
| LpnPI | CCDG | 9 cut(s) | 3, 41, 123, 235, 243, 253, 280, 288, 350 |
| Lsp1109I | GCAGC | 1 cut(s) | 23 |
| LweI | GCATC | 1 cut(s) | 23 |
| MalI | GATC | 6 cut(s) | 85, 101, 144, 305, 356, 375 |
| MboI | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| MboII | GAAGA | 1 cut(s) | 250 |
| MflI | RGATCY | 1 cut(s) | 142 |
| MhlI | GDGCHC | 2 cut(s) | 33, 63 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 44, 348 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 170 |
| MnlI | CCTC | 3 cut(s) | 66, 97, 226 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 402 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 268 |
| Mva1269I | GAATGC | 1 cut(s) | 197 |
| MvaI | CCWGG | 1 cut(s) | 268 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 414 |
| NdeII | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| NlaIV | GGNNCC | 1 cut(s) | 144 |
| PctI | GAATGC | 1 cut(s) | 197 |
| PfeI | GAWTC | 1 cut(s) | 327 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PpuMI | RGGWCCY | 1 cut(s) | 75 |
| Psp124BI | GAGCTC | 1 cut(s) | 63 |
| Psp5II | RGGWCCY | 1 cut(s) | 75 |
| Psp6I | CCWGG | 1 cut(s) | 266 |
| PspGI | CCWGG | 1 cut(s) | 266 |
| PspN4I | GGNNCC | 1 cut(s) | 144 |
| PspPI | GGNCC | 1 cut(s) | 75 |
| PspPPI | RGGWCCY | 1 cut(s) | 75 |
| PstNI | CAGNNNCTG | 1 cut(s) | 17 |
| PsuI | RGATCY | 1 cut(s) | 142 |
| RsaI | GTAC | 1 cut(s) | 95 |
| RsaNI | GTAC | 1 cut(s) | 94 |
| SacI | GAGCTC | 1 cut(s) | 63 |
| SaqAI | TTAA | 1 cut(s) | 402 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau3AI | GATC | 6 cut(s) | 83, 99, 142, 303, 354, 373 |
| Sau96I | GGNCC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 1 cut(s) | 268 |
| SduI | GDGCHC | 2 cut(s) | 33, 63 |
| SetI | ASST | 6 cut(s) | 63, 80, 158, 317, 342, 419 |
| SfaNI | GCATC | 1 cut(s) | 23 |
| SinI | GGWCC | 1 cut(s) | 75 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| Sse9I | AATT | 2 cut(s) | 44, 348 |
| SstI | GAGCTC | 1 cut(s) | 63 |
| StyD4I | CCNGG | 1 cut(s) | 266 |
| TaqI | TCGA | 3 cut(s) | 102, 216, 357 |
| TasI | AATT | 2 cut(s) | 44, 348 |
| TatI | WGTACW | 1 cut(s) | 93 |
| TfiI | GAWTC | 1 cut(s) | 327 |
| Tru1I | TTAA | 1 cut(s) | 402 |
| Tru9I | TTAA | 1 cut(s) | 402 |
| TseI | GCWGC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 2 cut(s) | 204, 250 |
| VneI | GTGCAC | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 1 cut(s) | 75 |
| XapI | RAATTY | 1 cut(s) | 348 |