5'-3' exoribonuclease activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| XRN_M | PF17846 | 6 - 176 | 3.8e-48 | Xrn1 helical domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 337 |
| AccII | CGCG | 1 cut(s) | 108 |
| AcsI | RAATTY | 2 cut(s) | 143, 833 |
| AcuI | CTGAAG | 2 cut(s) | 495, 729 |
| AfeI | AGCGCT | 1 cut(s) | 1158 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 337 |
| AgsI | TTSAA | 2 cut(s) | 163, 833 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 565, 597 |
| AluBI | AGCT | 7 cut(s) | 327, 405, 471, 508, 769, 781, 984 |
| AluI | AGCT | 7 cut(s) | 327, 405, 471, 508, 769, 781, 984 |
| Alw21I | GWGCWC | 1 cut(s) | 85 |
| Alw26I | GTCTC | 3 cut(s) | 239, 358, 1044 |
| Aor51HI | AGCGCT | 1 cut(s) | 1158 |
| AoxI | GGCC | 1 cut(s) | 820 |
| ApeKI | GCWGC | 2 cut(s) | 757, 984 |
| ApoI | RAATTY | 2 cut(s) | 143, 833 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 580 |
| AspLEI | GCGC | 2 cut(s) | 110, 1159 |
| AspS9I | GGNCC | 1 cut(s) | 796 |
| AsuHPI | GGTGA | 2 cut(s) | 466, 799 |
| AsuNHI | GCTAGC | 1 cut(s) | 769 |
| AvaII | GGWCC | 1 cut(s) | 796 |
| AxyI | CCTNAGG | 1 cut(s) | 96 |
| BauI | CACGAG | 1 cut(s) | 242 |
| BbsI | GAAGAC | 3 cut(s) | 129, 227, 486 |
| Bbv12I | GWGCWC | 1 cut(s) | 85 |
| BbvI | GCAGC | 2 cut(s) | 769, 971 |
| BccI | CCATC | 4 cut(s) | 112, 170, 631, 894 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciVI | GTATCC | 1 cut(s) | 974 |
| BcoDI | GTCTC | 3 cut(s) | 239, 358, 1044 |
| BfaI | CTAG | 2 cut(s) | 752, 770 |
| BfoI | RGCGCY | 1 cut(s) | 1160 |
| BfuI | GTATCC | 1 cut(s) | 974 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 538 |
| BisI | GCNGC | 2 cut(s) | 758, 985 |
| BlsI | GCNGC | 2 cut(s) | 759, 986 |
| Bme18I | GGWCC | 1 cut(s) | 796 |
| BmgT120I | GGNCC | 1 cut(s) | 796 |
| BmiI | GGNNCC | 3 cut(s) | 31, 797, 798 |
| BmsI | GCATC | 3 cut(s) | 144, 350, 436 |
| BmtI | GCTAGC | 1 cut(s) | 773 |
| BoxI | GACNNNNGTC | 1 cut(s) | 794 |
| BpiI | GAAGAC | 3 cut(s) | 129, 227, 486 |
| BsaJI | CCNNGG | 2 cut(s) | 74, 450 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 337 |
| Bse1I | ACTGG | 1 cut(s) | 1082 |
| Bse21I | CCTNAGG | 1 cut(s) | 96 |
| Bse3DI | GCAATG | 1 cut(s) | 1018 |
| BseDI | CCNNGG | 2 cut(s) | 74, 450 |
| BseGI | GGATG | 3 cut(s) | 181, 318, 905 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BseMI | GCAATG | 1 cut(s) | 1018 |
| BseMII | CTCAG | 3 cut(s) | 87, 690, 908 |
| BseNI | ACTGG | 1 cut(s) | 1082 |
| BseRI | GAGGAG | 1 cut(s) | 728 |
| BseXI | GCAGC | 2 cut(s) | 769, 971 |
| BseYI | CCCAGC | 2 cut(s) | 781, 926 |
| Bsh1236I | CGCG | 1 cut(s) | 108 |
| BshFI | GGCC | 1 cut(s) | 822 |
| BsiHKAI | GWGCWC | 1 cut(s) | 85 |
| BslFI | GGGAC | 2 cut(s) | 480, 782 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BsmAI | GTCTC | 3 cut(s) | 239, 358, 1044 |
| BsmFI | GGGAC | 2 cut(s) | 480, 782 |
| BsmI | GAATGC | 1 cut(s) | 298 |
| BsnI | GGCC | 1 cut(s) | 822 |
| Bsp1286I | GDGCHC | 1 cut(s) | 85 |
| BspANI | GGCC | 1 cut(s) | 822 |
| BspCNI | CTCAG | 3 cut(s) | 88, 691, 909 |
| BspFNI | CGCG | 1 cut(s) | 108 |
| BspLI | GGNNCC | 3 cut(s) | 31, 797, 798 |
| BspOI | GCTAGC | 1 cut(s) | 773 |
| BsrDI | GCAATG | 1 cut(s) | 1018 |
| BsrI | ACTGG | 1 cut(s) | 1082 |
| BssECI | CCNNGG | 2 cut(s) | 74, 450 |
| BssSI | CACGAG | 1 cut(s) | 242 |
| BssT1I | CCWWGG | 2 cut(s) | 74, 450 |
| Bst2BI | CACGAG | 1 cut(s) | 242 |
| Bst4CI | ACNGT | 4 cut(s) | 128, 556, 581, 952 |
| Bst6I | CTCTTC | 3 cut(s) | 705, 713, 881 |
| BstC8I | GCNNGC | 1 cut(s) | 771 |
| BstDEI | CTNAG | 3 cut(s) | 96, 699, 917 |
| BstF5I | GGATG | 3 cut(s) | 181, 318, 905 |
| BstFNI | CGCG | 1 cut(s) | 108 |
| BstH2I | RGCGCY | 1 cut(s) | 1160 |
| BstHHI | GCGC | 2 cut(s) | 110, 1159 |
| BstMAI | GTCTC | 3 cut(s) | 239, 358, 1044 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 538, 766, 1163 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 794 |
| BstUI | CGCG | 1 cut(s) | 108 |
| BstV1I | GCAGC | 2 cut(s) | 769, 971 |
| BstV2I | GAAGAC | 3 cut(s) | 129, 227, 486 |
| Bsu36I | CCTNAGG | 1 cut(s) | 96 |
| BsuI | GTATCC | 1 cut(s) | 974 |
| BsuRI | GGCC | 1 cut(s) | 822 |
| BtsCI | GGATG | 3 cut(s) | 181, 318, 905 |
| BtsIMutI | CAGTG | 4 cut(s) | 356, 421, 914, 1075 |
| Cac8I | GCNNGC | 1 cut(s) | 771 |
| CfoI | GCGC | 2 cut(s) | 110, 1159 |
| Cfr13I | GGNCC | 1 cut(s) | 796 |
| CseI | GACGC | 1 cut(s) | 846 |
| CviAII | CATG | 7 cut(s) | 58, 86, 172, 192, 634, 806, 1138 |
| DdeI | CTNAG | 3 cut(s) | 96, 699, 917 |
| DraI | TTTAAA | 1 cut(s) | 40 |
| Eam1104I | CTCTTC | 3 cut(s) | 705, 713, 881 |
| EarI | CTCTTC | 3 cut(s) | 705, 713, 881 |
| Eco130I | CCWWGG | 2 cut(s) | 74, 450 |
| Eco147I | AGGCCT | 1 cut(s) | 822 |
| Eco47I | GGWCC | 1 cut(s) | 796 |
| Eco47III | AGCGCT | 1 cut(s) | 1158 |
| Eco57I | CTGAAG | 2 cut(s) | 495, 729 |
| Eco81I | CCTNAGG | 1 cut(s) | 96 |
| EcoO109I | RGGNCCY | 1 cut(s) | 796 |
| EcoRI | GAATTC | 1 cut(s) | 833 |
| EcoT14I | CCWWGG | 2 cut(s) | 74, 450 |
| ErhI | CCWWGG | 2 cut(s) | 74, 450 |
| FaeI | CATG | 7 cut(s) | 61, 89, 175, 195, 637, 809, 1141 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 923, 955 |
| FaqI | GGGAC | 2 cut(s) | 480, 782 |
| FatI | CATG | 7 cut(s) | 57, 85, 171, 191, 633, 805, 1137 |
| FauNDI | CATATG | 1 cut(s) | 528 |
| Fnu4HI | GCNGC | 2 cut(s) | 758, 985 |
| FokI | GGATG | 3 cut(s) | 188, 305, 912 |
| Fsp4HI | GCNGC | 2 cut(s) | 758, 985 |
| FspBI | CTAG | 2 cut(s) | 752, 770 |
| GlaI | GCGC | 2 cut(s) | 109, 1158 |
| GluI | GCNGC | 2 cut(s) | 758, 985 |
| GsaI | CCCAGC | 2 cut(s) | 785, 930 |
| HaeII | RGCGCY | 1 cut(s) | 1160 |
| HaeIII | GGCC | 1 cut(s) | 822 |
| HgaI | GACGC | 1 cut(s) | 846 |
| HhaI | GCGC | 2 cut(s) | 110, 1159 |
| Hin1II | CATG | 7 cut(s) | 61, 89, 175, 195, 637, 809, 1141 |
| Hin6I | GCGC | 2 cut(s) | 108, 1157 |
| HinP1I | GCGC | 2 cut(s) | 108, 1157 |
| HincII | GTYRAC | 1 cut(s) | 431 |
| HindII | GTYRAC | 1 cut(s) | 431 |
| HinfI | GANTC | 4 cut(s) | 227, 411, 622, 748 |
| HphI | GGTGA | 2 cut(s) | 466, 799 |
| Hpy166II | GTNNAC | 4 cut(s) | 169, 431, 547, 559 |
| Hpy188I | TCNGA | 5 cut(s) | 157, 323, 475, 709, 1114 |
| Hpy188III | TCNNGA | 3 cut(s) | 95, 752, 940 |
| Hpy8I | GTNNAC | 4 cut(s) | 169, 431, 547, 559 |
| HpyAV | CCTTC | 7 cut(s) | 19, 162, 256, 680, 865, 925, 1109 |
| HpyCH4III | ACNGT | 4 cut(s) | 128, 556, 581, 952 |
| HpyCH4IV | ACGT | 1 cut(s) | 654 |
| HpyCH4V | TGCA | 3 cut(s) | 89, 526, 1011 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 538, 766, 1163 |
| HpyF3I | CTNAG | 3 cut(s) | 96, 699, 917 |
| HpySE526I | ACGT | 1 cut(s) | 654 |
| Hsp92II | CATG | 7 cut(s) | 61, 89, 175, 195, 637, 809, 1141 |
| HspAI | GCGC | 2 cut(s) | 108, 1157 |
| KflI | GGGWCCC | 1 cut(s) | 796 |
| LmnI | GCTCC | 2 cut(s) | 332, 766 |
| Lsp1109I | GCAGC | 2 cut(s) | 769, 971 |
| LweI | GCATC | 3 cut(s) | 144, 350, 436 |
| MaeI | CTAG | 2 cut(s) | 752, 770 |
| MaeII | ACGT | 1 cut(s) | 654 |
| MaeIII | GTNAC | 6 cut(s) | 667, 745, 787, 839, 954, 993 |
| MboII | GAAGA | 9 cut(s) | 134, 227, 290, 488, 491, 722, 730, 898, 1081 |
| MhlI | GDGCHC | 1 cut(s) | 85 |
| MluCI | AATT | 8 cut(s) | 17, 143, 282, 348, 387, 397, 833, 879 |
| MlyI | GAGTC | 2 cut(s) | 616, 742 |
| MmeI | TCCRAC | 1 cut(s) | 237 |
| MroXI | GAANNNNTTC | 1 cut(s) | 580 |
| MseI | TTAA | 3 cut(s) | 39, 945, 1152 |
| Mva1269I | GAATGC | 1 cut(s) | 298 |
| MvnI | CGCG | 1 cut(s) | 108 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 538, 766, 1163 |
| NdeI | CATATG | 1 cut(s) | 528 |
| NheI | GCTAGC | 1 cut(s) | 769 |
| NlaIII | CATG | 7 cut(s) | 61, 89, 175, 195, 637, 809, 1141 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 797, 798 |
| NmuCI | GTSAC | 3 cut(s) | 667, 745, 787 |
| PceI | AGGCCT | 1 cut(s) | 822 |
| PctI | GAATGC | 1 cut(s) | 298 |
| PdmI | GAANNNNTTC | 1 cut(s) | 580 |
| PfeI | GAWTC | 2 cut(s) | 227, 411 |
| PflFI | GACNNNGTC | 1 cut(s) | 485 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 337 |
| PkrI | GCNGC | 2 cut(s) | 759, 986 |
| PleI | GAGTC | 2 cut(s) | 616, 742 |
| PpsI | GAGTC | 2 cut(s) | 616, 742 |
| PpuMI | RGGWCCY | 1 cut(s) | 796 |
| PshAI | GACNNNNGTC | 1 cut(s) | 794 |
| Psp5II | RGGWCCY | 1 cut(s) | 796 |
| PspFI | CCCAGC | 2 cut(s) | 781, 926 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 797, 798 |
| PspPI | GGNCC | 1 cut(s) | 796 |
| PspPPI | RGGWCCY | 1 cut(s) | 796 |
| PsyI | GACNNNGTC | 1 cut(s) | 485 |
| SaqAI | TTAA | 3 cut(s) | 39, 945, 1152 |
| SatI | GCNGC | 2 cut(s) | 758, 985 |
| Sau96I | GGNCC | 1 cut(s) | 796 |
| SchI | GAGTC | 2 cut(s) | 616, 742 |
| SduI | GDGCHC | 1 cut(s) | 85 |
| SfaNI | GCATC | 3 cut(s) | 144, 350, 436 |
| SinI | GGWCC | 1 cut(s) | 796 |
| Sse9I | AATT | 8 cut(s) | 17, 143, 282, 348, 387, 397, 833, 879 |
| SseBI | AGGCCT | 1 cut(s) | 822 |
| SspI | AATATT | 1 cut(s) | 815 |
| SspMI | CTAG | 2 cut(s) | 752, 770 |
| StuI | AGGCCT | 1 cut(s) | 822 |
| StyI | CCWWGG | 2 cut(s) | 74, 450 |
| TaaI | ACNGT | 4 cut(s) | 128, 556, 581, 952 |
| TaiI | ACGT | 1 cut(s) | 657 |
| TaqI | TCGA | 2 cut(s) | 131, 739 |
| TasI | AATT | 8 cut(s) | 17, 143, 282, 348, 387, 397, 833, 879 |
| TfiI | GAWTC | 2 cut(s) | 227, 411 |
| Tru1I | TTAA | 3 cut(s) | 39, 945, 1152 |
| Tru9I | TTAA | 3 cut(s) | 39, 945, 1152 |
| TscAI | CASTG | 4 cut(s) | 363, 421, 921, 1082 |
| TseFI | GTSAC | 3 cut(s) | 667, 745, 787 |
| TseI | GCWGC | 2 cut(s) | 757, 984 |
| Tsp45I | GTSAC | 3 cut(s) | 667, 745, 787 |
| TspDTI | ATGAA | 4 cut(s) | 240, 307, 695, 699 |
| TspGWI | ACGGA | 2 cut(s) | 416, 1070 |
| TspRI | CASTG | 4 cut(s) | 363, 421, 921, 1082 |
| Tth111I | GACNNNGTC | 1 cut(s) | 485 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 337 |
| VpaK11BI | GGWCC | 1 cut(s) | 796 |
| XapI | RAATTY | 2 cut(s) | 143, 833 |
| XbaI | TCTAGA | 1 cut(s) | 751 |
| XmnI | GAANNNNTTC | 1 cut(s) | 580 |
| XspI | CTAG | 2 cut(s) | 752, 770 |