Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 255 |
| Acc36I | ACCTGC | 1 cut(s) | 124 |
| Acc65I | GGTACC | 1 cut(s) | 515 |
| AccB1I | GGYRCC | 1 cut(s) | 515 |
| AccI | GTMKAC | 1 cut(s) | 596 |
| AciI | CCGC | 4 cut(s) | 28, 95, 173, 291 |
| AfaI | GTAC | 2 cut(s) | 155, 517 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 641 |
| AgsI | TTSAA | 5 cut(s) | 305, 325, 376, 535, 556 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 653 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 230, 262 |
| Ama87I | CYCGRG | 1 cut(s) | 680 |
| AoxI | GGCC | 3 cut(s) | 477, 540, 612 |
| ApaI | GGGCCC | 2 cut(s) | 481, 616 |
| ApeKI | GCWGC | 1 cut(s) | 217 |
| Asp718I | GGTACC | 1 cut(s) | 515 |
| AspS9I | GGNCC | 6 cut(s) | 477, 478, 541, 580, 612, 613 |
| AsuC2I | CCSGG | 1 cut(s) | 616 |
| AsuHPI | GGTGA | 1 cut(s) | 205 |
| AvaI | CYCGRG | 1 cut(s) | 680 |
| AvaII | GGWCC | 1 cut(s) | 580 |
| BaeGI | GKGCMC | 2 cut(s) | 481, 616 |
| BanI | GGYRCC | 1 cut(s) | 515 |
| BanII | GRGCYC | 2 cut(s) | 481, 616 |
| BbvI | GCAGC | 1 cut(s) | 204 |
| BccI | CCATC | 2 cut(s) | 421, 659 |
| BceAI | ACGGC | 1 cut(s) | 555 |
| BcnI | CCSGG | 1 cut(s) | 616 |
| BfaI | CTAG | 3 cut(s) | 87, 120, 404 |
| BfuAI | ACCTGC | 1 cut(s) | 124 |
| BisI | GCNGC | 3 cut(s) | 174, 218, 292 |
| BlsI | GCNGC | 3 cut(s) | 175, 219, 293 |
| Bme1390I | CCNGG | 1 cut(s) | 616 |
| Bme18I | GGWCC | 1 cut(s) | 580 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 653 |
| BmeT110I | CYCGRG | 1 cut(s) | 680 |
| BmgT120I | GGNCC | 6 cut(s) | 477, 478, 541, 580, 612, 613 |
| BmiI | GGNNCC | 3 cut(s) | 479, 517, 614 |
| BmrFI | CCNGG | 1 cut(s) | 616 |
| BmrI | ACTGGG | 2 cut(s) | 514, 581 |
| BmsI | GCATC | 3 cut(s) | 125, 298, 517 |
| BmuI | ACTGGG | 2 cut(s) | 514, 581 |
| BpuMI | CCSGG | 1 cut(s) | 616 |
| BsaJI | CCNNGG | 1 cut(s) | 246 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 619, 649 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 641 |
| Bse1I | ACTGG | 3 cut(s) | 161, 520, 587 |
| BseDI | CCNNGG | 1 cut(s) | 246 |
| BseGI | GGATG | 2 cut(s) | 436, 670 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 641 |
| BseMII | CTCAG | 2 cut(s) | 75, 536 |
| BseNI | ACTGG | 3 cut(s) | 161, 520, 587 |
| BseSI | GKGCMC | 2 cut(s) | 481, 616 |
| BseXI | GCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 3 cut(s) | 479, 542, 614 |
| BshNI | GGYRCC | 1 cut(s) | 515 |
| BsiHKCI | CYCGRG | 1 cut(s) | 680 |
| BsiSI | CCGG | 1 cut(s) | 616 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 641 |
| BsnI | GGCC | 3 cut(s) | 479, 542, 614 |
| BsoBI | CYCGRG | 1 cut(s) | 680 |
| Bsp120I | GGGCCC | 2 cut(s) | 477, 612 |
| Bsp1286I | GDGCHC | 2 cut(s) | 481, 616 |
| Bsp143I | GATC | 1 cut(s) | 197 |
| BspACI | CCGC | 4 cut(s) | 28, 95, 173, 291 |
| BspANI | GGCC | 3 cut(s) | 479, 542, 614 |
| BspCNI | CTCAG | 2 cut(s) | 74, 537 |
| BspLI | GGNNCC | 3 cut(s) | 479, 517, 614 |
| BspMI | ACCTGC | 1 cut(s) | 124 |
| BspT107I | GGYRCC | 1 cut(s) | 515 |
| BsrI | ACTGG | 3 cut(s) | 161, 520, 587 |
| BssECI | CCNNGG | 1 cut(s) | 246 |
| BssMI | GATC | 1 cut(s) | 197 |
| BssT1I | CCWWGG | 1 cut(s) | 246 |
| BstDEI | CTNAG | 3 cut(s) | 2, 61, 545 |
| BstF5I | GGATG | 2 cut(s) | 436, 670 |
| BstKTI | GATC | 1 cut(s) | 200 |
| BstMBI | GATC | 1 cut(s) | 197 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 34, 92, 548 |
| BstNSI | RCATGY | 1 cut(s) | 320 |
| BstSCI | CCNGG | 1 cut(s) | 614 |
| BstSLI | GKGCMC | 2 cut(s) | 481, 616 |
| BstV1I | GCAGC | 1 cut(s) | 204 |
| BsuRI | GGCC | 3 cut(s) | 479, 542, 614 |
| BtsCI | GGATG | 2 cut(s) | 436, 670 |
| BveI | ACCTGC | 1 cut(s) | 124 |
| Cfr13I | GGNCC | 6 cut(s) | 477, 478, 541, 580, 612, 613 |
| Csp6I | GTAC | 2 cut(s) | 154, 516 |
| CviAII | CATG | 6 cut(s) | 80, 265, 269, 317, 330, 446 |
| CviJI | RGCY | 9 cut(s) | 86, 176, 245, 251, 263, 294, 479, 542, 614 |
| CviKI_1 | RGCY | 9 cut(s) | 86, 176, 245, 251, 263, 294, 479, 542, 614 |
| CviQI | GTAC | 2 cut(s) | 154, 516 |
| DdeI | CTNAG | 3 cut(s) | 2, 61, 545 |
| DpnI | GATC | 1 cut(s) | 199 |
| DpnII | GATC | 1 cut(s) | 197 |
| DriI | GACNNNNNGTC | 1 cut(s) | 653 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 653 |
| Eco130I | CCWWGG | 1 cut(s) | 246 |
| Eco24I | GRGCYC | 2 cut(s) | 481, 616 |
| Eco47I | GGWCC | 1 cut(s) | 580 |
| Eco88I | CYCGRG | 1 cut(s) | 680 |
| EcoO109I | RGGNCCY | 2 cut(s) | 478, 612 |
| EcoT14I | CCWWGG | 1 cut(s) | 246 |
| EcoT22I | ATGCAT | 1 cut(s) | 270 |
| EcoT38I | GRGCYC | 2 cut(s) | 481, 616 |
| ErhI | CCWWGG | 1 cut(s) | 246 |
| FaeI | CATG | 6 cut(s) | 83, 268, 272, 320, 333, 449 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 230, 262 |
| FatI | CATG | 6 cut(s) | 79, 264, 268, 316, 329, 445 |
| FauI | CCCGC | 1 cut(s) | 21 |
| FblI | GTMKAC | 1 cut(s) | 596 |
| Fnu4HI | GCNGC | 3 cut(s) | 174, 218, 292 |
| FokI | GGATG | 2 cut(s) | 443, 677 |
| FriOI | GRGCYC | 2 cut(s) | 481, 616 |
| Fsp4HI | GCNGC | 3 cut(s) | 174, 218, 292 |
| FspBI | CTAG | 3 cut(s) | 87, 120, 404 |
| GluI | GCNGC | 3 cut(s) | 174, 218, 292 |
| HaeIII | GGCC | 3 cut(s) | 479, 542, 614 |
| HapII | CCGG | 1 cut(s) | 616 |
| Hin1II | CATG | 6 cut(s) | 83, 268, 272, 320, 333, 449 |
| HpaII | CCGG | 1 cut(s) | 616 |
| HphI | GGTGA | 1 cut(s) | 205 |
| Hpy166II | GTNNAC | 4 cut(s) | 491, 583, 597, 644 |
| Hpy188I | TCNGA | 2 cut(s) | 189, 639 |
| Hpy188III | TCNNGA | 1 cut(s) | 404 |
| Hpy8I | GTNNAC | 4 cut(s) | 491, 583, 597, 644 |
| HpyAV | CCTTC | 3 cut(s) | 184, 505, 550 |
| HpyCH4IV | ACGT | 1 cut(s) | 336 |
| HpyCH4V | TGCA | 6 cut(s) | 116, 268, 316, 333, 391, 445 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 34, 92, 548 |
| HpyF3I | CTNAG | 3 cut(s) | 2, 61, 545 |
| HpySE526I | ACGT | 1 cut(s) | 336 |
| Hsp92II | CATG | 6 cut(s) | 83, 268, 272, 320, 333, 449 |
| KpnI | GGTACC | 1 cut(s) | 519 |
| Kzo9I | GATC | 1 cut(s) | 197 |
| Lsp1109I | GCAGC | 1 cut(s) | 204 |
| LweI | GCATC | 3 cut(s) | 125, 298, 517 |
| MaeI | CTAG | 3 cut(s) | 87, 120, 404 |
| MaeII | ACGT | 1 cut(s) | 336 |
| MaeIII | GTNAC | 1 cut(s) | 337 |
| MalI | GATC | 1 cut(s) | 199 |
| MboI | GATC | 1 cut(s) | 197 |
| MboII | GAAGA | 3 cut(s) | 250, 317, 419 |
| MfeI | CAATTG | 1 cut(s) | 575 |
| MhlI | GDGCHC | 2 cut(s) | 481, 616 |
| MluCI | AATT | 2 cut(s) | 381, 575 |
| MnlI | CCTC | 5 cut(s) | 84, 144, 195, 204, 645 |
| Mph1103I | ATGCAT | 1 cut(s) | 270 |
| MseI | TTAA | 1 cut(s) | 384 |
| MslI | CAYNNNNRTG | 2 cut(s) | 205, 450 |
| MspI | CCGG | 1 cut(s) | 616 |
| MspR9I | CCNGG | 1 cut(s) | 616 |
| MunI | CAATTG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 34, 92, 548 |
| NciI | CCSGG | 1 cut(s) | 616 |
| NdeII | GATC | 1 cut(s) | 197 |
| NlaIII | CATG | 6 cut(s) | 83, 268, 272, 320, 333, 449 |
| NlaIV | GGNNCC | 3 cut(s) | 479, 517, 614 |
| NsiI | ATGCAT | 1 cut(s) | 270 |
| NspI | RCATGY | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 175, 219, 293 |
| PsiI | TTATAA | 1 cut(s) | 255 |
| PspN4I | GGNNCC | 3 cut(s) | 479, 517, 614 |
| PspOMI | GGGCCC | 2 cut(s) | 477, 612 |
| PspPI | GGNCC | 6 cut(s) | 477, 478, 541, 580, 612, 613 |
| RsaI | GTAC | 2 cut(s) | 155, 517 |
| RsaNI | GTAC | 2 cut(s) | 154, 516 |
| RseI | CAYNNNNRTG | 2 cut(s) | 205, 450 |
| SaqAI | TTAA | 1 cut(s) | 384 |
| SatI | GCNGC | 3 cut(s) | 174, 218, 292 |
| Sau3AI | GATC | 1 cut(s) | 197 |
| Sau96I | GGNCC | 6 cut(s) | 477, 478, 541, 580, 612, 613 |
| ScrFI | CCNGG | 1 cut(s) | 616 |
| SduI | GDGCHC | 2 cut(s) | 481, 616 |
| SetI | ASST | 9 cut(s) | 138, 155, 195, 215, 235, 261, 339, 390, 561 |
| SfaNI | GCATC | 3 cut(s) | 125, 298, 517 |
| SinI | GGWCC | 1 cut(s) | 580 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 205, 450 |
| Sse9I | AATT | 2 cut(s) | 381, 575 |
| SsiI | CCGC | 4 cut(s) | 28, 95, 173, 291 |
| SspI | AATATT | 1 cut(s) | 181 |
| SspMI | CTAG | 3 cut(s) | 87, 120, 404 |
| StyD4I | CCNGG | 1 cut(s) | 614 |
| StyI | CCWWGG | 1 cut(s) | 246 |
| TaiI | ACGT | 1 cut(s) | 339 |
| TaqI | TCGA | 1 cut(s) | 676 |
| TasI | AATT | 2 cut(s) | 381, 575 |
| TauI | GCSGC | 2 cut(s) | 176, 294 |
| Tru1I | TTAA | 1 cut(s) | 384 |
| Tru9I | TTAA | 1 cut(s) | 384 |
| TseI | GCWGC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 1 cut(s) | 251 |
| TspGWI | ACGGA | 1 cut(s) | 122 |
| VpaK11BI | GGWCC | 1 cut(s) | 580 |
| XbaI | TCTAGA | 1 cut(s) | 403 |
| XceI | RCATGY | 1 cut(s) | 320 |
| XmiI | GTMKAC | 1 cut(s) | 596 |
| XspI | CTAG | 3 cut(s) | 87, 120, 404 |
| Zsp2I | ATGCAT | 1 cut(s) | 270 |