Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 539, 563 |
| AcsI | RAATTY | 3 cut(s) | 67, 185, 678 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 539, 542 |
| AgsI | TTSAA | 5 cut(s) | 138, 173, 307, 629, 666 |
| AjnI | CCWGG | 2 cut(s) | 378, 723 |
| AluBI | AGCT | 7 cut(s) | 30, 90, 454, 461, 491, 776, 786 |
| AluI | AGCT | 7 cut(s) | 30, 90, 454, 461, 491, 776, 786 |
| Alw26I | GTCTC | 4 cut(s) | 150, 255, 265, 602 |
| Ama87I | CYCGRG | 1 cut(s) | 492 |
| ApeKI | GCWGC | 4 cut(s) | 11, 354, 443, 773 |
| ApoI | RAATTY | 3 cut(s) | 67, 185, 678 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 587 |
| AspA2I | CCTAGG | 1 cut(s) | 670 |
| AsuHPI | GGTGA | 1 cut(s) | 46 |
| AvaI | CYCGRG | 1 cut(s) | 492 |
| AvrII | CCTAGG | 1 cut(s) | 670 |
| BbvI | GCAGC | 4 cut(s) | 23, 341, 455, 785 |
| BccI | CCATC | 2 cut(s) | 240, 644 |
| BceAI | ACGGC | 1 cut(s) | 311 |
| BciT130I | CCWGG | 2 cut(s) | 380, 725 |
| BciVI | GTATCC | 1 cut(s) | 108 |
| BcoDI | GTCTC | 4 cut(s) | 150, 255, 265, 602 |
| BfaI | CTAG | 1 cut(s) | 671 |
| BfmI | CTRYAG | 1 cut(s) | 355 |
| BfuI | GTATCC | 1 cut(s) | 108 |
| BisI | GCNGC | 4 cut(s) | 12, 355, 444, 774 |
| BlnI | CCTAGG | 1 cut(s) | 670 |
| BlsI | GCNGC | 4 cut(s) | 13, 356, 445, 775 |
| Bme1390I | CCNGG | 2 cut(s) | 380, 725 |
| BmeT110I | CYCGRG | 1 cut(s) | 492 |
| BmiI | GGNNCC | 2 cut(s) | 167, 531 |
| BmrFI | CCNGG | 2 cut(s) | 380, 725 |
| BmrI | ACTGGG | 1 cut(s) | 516 |
| BmsI | GCATC | 1 cut(s) | 455 |
| BmuI | ACTGGG | 1 cut(s) | 516 |
| BsaI | GGTCTC | 1 cut(s) | 255 |
| BsaJI | CCNNGG | 2 cut(s) | 327, 670 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 539, 542 |
| Bse1I | ACTGG | 3 cut(s) | 95, 511, 596 |
| BseBI | CCWGG | 2 cut(s) | 380, 725 |
| BseDI | CCNNGG | 2 cut(s) | 327, 670 |
| BseGI | GGATG | 2 cut(s) | 446, 655 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 539, 542 |
| BseMII | CTCAG | 1 cut(s) | 632 |
| BseNI | ACTGG | 3 cut(s) | 95, 511, 596 |
| BseRI | GAGGAG | 1 cut(s) | 522 |
| BseXI | GCAGC | 4 cut(s) | 23, 341, 455, 785 |
| BsiHKCI | CYCGRG | 1 cut(s) | 492 |
| BslFI | GGGAC | 1 cut(s) | 320 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 539, 542 |
| BsmAI | GTCTC | 4 cut(s) | 150, 255, 265, 602 |
| BsmBI | CGTCTC | 1 cut(s) | 150 |
| BsmFI | GGGAC | 1 cut(s) | 320 |
| Bso31I | GGTCTC | 1 cut(s) | 255 |
| BsoBI | CYCGRG | 1 cut(s) | 492 |
| BspACI | CCGC | 2 cut(s) | 539, 563 |
| BspCNI | CTCAG | 1 cut(s) | 631 |
| BspHI | TCATGA | 1 cut(s) | 219 |
| BspLI | GGNNCC | 2 cut(s) | 167, 531 |
| BspMAI | CTGCAG | 1 cut(s) | 359 |
| BspTNI | GGTCTC | 1 cut(s) | 255 |
| BsrI | ACTGG | 3 cut(s) | 95, 511, 596 |
| BssECI | CCNNGG | 2 cut(s) | 327, 670 |
| BssT1I | CCWWGG | 1 cut(s) | 670 |
| Bst2UI | CCWGG | 2 cut(s) | 380, 725 |
| Bst4CI | ACNGT | 1 cut(s) | 303 |
| BstC8I | GCNNGC | 1 cut(s) | 554 |
| BstDEI | CTNAG | 1 cut(s) | 618 |
| BstDSI | CCRYGG | 1 cut(s) | 327 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 540 |
| BstF5I | GGATG | 2 cut(s) | 446, 655 |
| BstMAI | GTCTC | 4 cut(s) | 150, 255, 265, 602 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 536 |
| BstNI | CCWGG | 2 cut(s) | 380, 725 |
| BstSCI | CCNGG | 2 cut(s) | 378, 723 |
| BstSFI | CTRYAG | 1 cut(s) | 355 |
| BstV1I | GCAGC | 4 cut(s) | 23, 341, 455, 785 |
| BsuI | GTATCC | 1 cut(s) | 108 |
| BtgI | CCRYGG | 1 cut(s) | 327 |
| BtsCI | GGATG | 2 cut(s) | 446, 655 |
| BtsIMutI | CAGTG | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 1 cut(s) | 554 |
| CciI | TCATGA | 1 cut(s) | 219 |
| CseI | GACGC | 1 cut(s) | 3 |
| CviAII | CATG | 2 cut(s) | 220, 713 |
| DdeI | CTNAG | 1 cut(s) | 618 |
| Eco130I | CCWWGG | 1 cut(s) | 670 |
| Eco31I | GGTCTC | 1 cut(s) | 255 |
| Eco88I | CYCGRG | 1 cut(s) | 492 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 540 |
| EcoRI | GAATTC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 378, 723 |
| EcoT14I | CCWWGG | 1 cut(s) | 670 |
| ErhI | CCWWGG | 1 cut(s) | 670 |
| Esp3I | CGTCTC | 1 cut(s) | 150 |
| FaeI | CATG | 2 cut(s) | 223, 716 |
| FaqI | GGGAC | 1 cut(s) | 320 |
| FatI | CATG | 2 cut(s) | 219, 712 |
| FauI | CCCGC | 1 cut(s) | 532 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 355, 444, 774 |
| FokI | GGATG | 2 cut(s) | 433, 662 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 355, 444, 774 |
| FspBI | CTAG | 1 cut(s) | 671 |
| GluI | GCNGC | 4 cut(s) | 12, 355, 444, 774 |
| HgaI | GACGC | 1 cut(s) | 3 |
| Hin1II | CATG | 2 cut(s) | 223, 716 |
| HindIII | AAGCTT | 1 cut(s) | 459 |
| HinfI | GANTC | 6 cut(s) | 79, 307, 396, 614, 696, 760 |
| HphI | GGTGA | 1 cut(s) | 46 |
| Hpy166II | GTNNAC | 2 cut(s) | 201, 286 |
| Hpy188I | TCNGA | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 3 cut(s) | 83, 138, 220 |
| Hpy8I | GTNNAC | 2 cut(s) | 201, 286 |
| HpyAV | CCTTC | 2 cut(s) | 348, 520 |
| HpyCH4III | ACNGT | 1 cut(s) | 303 |
| HpyCH4IV | ACGT | 2 cut(s) | 159, 385 |
| HpyCH4V | TGCA | 4 cut(s) | 11, 357, 556, 797 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 536 |
| HpyF3I | CTNAG | 1 cut(s) | 618 |
| HpySE526I | ACGT | 2 cut(s) | 159, 385 |
| Hsp92II | CATG | 2 cut(s) | 223, 716 |
| LmnI | GCTCC | 2 cut(s) | 165, 535 |
| Lsp1109I | GCAGC | 4 cut(s) | 23, 341, 455, 785 |
| LweI | GCATC | 1 cut(s) | 455 |
| MaeI | CTAG | 1 cut(s) | 671 |
| MaeII | ACGT | 2 cut(s) | 159, 385 |
| MaeIII | GTNAC | 3 cut(s) | 38, 83, 757 |
| MboII | GAAGA | 1 cut(s) | 126 |
| MfeI | CAATTG | 2 cut(s) | 349, 635 |
| MluCI | AATT | 8 cut(s) | 67, 185, 349, 388, 411, 635, 678, 718 |
| MlyI | GAGTC | 3 cut(s) | 405, 705, 754 |
| MmeI | TCCRAC | 1 cut(s) | 585 |
| MnlI | CCTC | 9 cut(s) | 28, 94, 103, 136, 251, 495, 536, 543, 700 |
| MroXI | GAANNNNTTC | 1 cut(s) | 587 |
| MseI | TTAA | 2 cut(s) | 44, 414 |
| MspR9I | CCNGG | 2 cut(s) | 380, 725 |
| MunI | CAATTG | 2 cut(s) | 349, 635 |
| MvaI | CCWGG | 2 cut(s) | 380, 725 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 536 |
| NlaIII | CATG | 2 cut(s) | 223, 716 |
| NlaIV | GGNNCC | 2 cut(s) | 167, 531 |
| NmuCI | GTSAC | 3 cut(s) | 38, 83, 757 |
| PagI | TCATGA | 1 cut(s) | 219 |
| PdmI | GAANNNNTTC | 1 cut(s) | 587 |
| PfeI | GAWTC | 3 cut(s) | 79, 307, 614 |
| PfoI | TCCNGGA | 1 cut(s) | 378 |
| PkrI | GCNGC | 4 cut(s) | 13, 356, 445, 775 |
| PleI | GAGTC | 3 cut(s) | 404, 704, 754 |
| PpsI | GAGTC | 3 cut(s) | 404, 704, 754 |
| Psp6I | CCWGG | 2 cut(s) | 378, 723 |
| PspGI | CCWGG | 2 cut(s) | 378, 723 |
| PspN4I | GGNNCC | 2 cut(s) | 167, 531 |
| PstI | CTGCAG | 1 cut(s) | 359 |
| SaqAI | TTAA | 2 cut(s) | 44, 414 |
| SatI | GCNGC | 4 cut(s) | 12, 355, 444, 774 |
| SchI | GAGTC | 3 cut(s) | 405, 705, 754 |
| ScrFI | CCNGG | 2 cut(s) | 380, 725 |
| SfaNI | GCATC | 1 cut(s) | 455 |
| SfcI | CTRYAG | 1 cut(s) | 355 |
| Sse9I | AATT | 8 cut(s) | 67, 185, 349, 388, 411, 635, 678, 718 |
| SsiI | CCGC | 2 cut(s) | 539, 563 |
| SspMI | CTAG | 1 cut(s) | 671 |
| StyD4I | CCNGG | 2 cut(s) | 378, 723 |
| StyI | CCWWGG | 1 cut(s) | 670 |
| TaaI | ACNGT | 1 cut(s) | 303 |
| TaiI | ACGT | 2 cut(s) | 162, 388 |
| TasI | AATT | 8 cut(s) | 67, 185, 349, 388, 411, 635, 678, 718 |
| TfiI | GAWTC | 3 cut(s) | 79, 307, 614 |
| Tru1I | TTAA | 2 cut(s) | 44, 414 |
| Tru9I | TTAA | 2 cut(s) | 44, 414 |
| TscAI | CASTG | 1 cut(s) | 306 |
| TseFI | GTSAC | 3 cut(s) | 38, 83, 757 |
| TseI | GCWGC | 4 cut(s) | 11, 354, 443, 773 |
| Tsp45I | GTSAC | 3 cut(s) | 38, 83, 757 |
| TspDTI | ATGAA | 2 cut(s) | 557, 722 |
| TspRI | CASTG | 1 cut(s) | 306 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 540 |
| XapI | RAATTY | 3 cut(s) | 67, 185, 678 |
| XmaJI | CCTAGG | 1 cut(s) | 670 |
| XmnI | GAANNNNTTC | 1 cut(s) | 587 |
| XspI | CTAG | 1 cut(s) | 671 |