Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 64 - 156 | 2.5e-12 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 369 |
| AccII | CGCG | 1 cut(s) | 497 |
| AciI | CCGC | 2 cut(s) | 495, 497 |
| AcsI | RAATTY | 1 cut(s) | 72 |
| AcuI | CTGAAG | 1 cut(s) | 437 |
| AfaI | GTAC | 1 cut(s) | 380 |
| AgsI | TTSAA | 2 cut(s) | 113, 467 |
| AjnI | CCWGG | 2 cut(s) | 33, 322 |
| AleI | CACNNNNGTG | 1 cut(s) | 350 |
| AluBI | AGCT | 2 cut(s) | 470, 484 |
| AluI | AGCT | 2 cut(s) | 470, 484 |
| Alw26I | GTCTC | 1 cut(s) | 119 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 40 |
| AoxI | GGCC | 2 cut(s) | 37, 212 |
| ApoI | RAATTY | 1 cut(s) | 72 |
| AseI | ATTAAT | 1 cut(s) | 332 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 247 |
| AspLEI | GCGC | 1 cut(s) | 370 |
| AspS9I | GGNCC | 2 cut(s) | 18, 37 |
| AsuHPI | GGTGA | 3 cut(s) | 44, 143, 268 |
| AvaII | GGWCC | 1 cut(s) | 18 |
| BccI | CCATC | 2 cut(s) | 30, 37 |
| BciT130I | CCWGG | 2 cut(s) | 35, 324 |
| BcoDI | GTCTC | 1 cut(s) | 119 |
| BfaI | CTAG | 2 cut(s) | 201, 449 |
| BisI | GCNGC | 1 cut(s) | 495 |
| BlsI | GCNGC | 1 cut(s) | 496 |
| Bme1390I | CCNGG | 2 cut(s) | 35, 324 |
| Bme18I | GGWCC | 1 cut(s) | 18 |
| BmgT120I | GGNCC | 2 cut(s) | 18, 37 |
| BmiI | GGNNCC | 2 cut(s) | 20, 189 |
| BmrFI | CCNGG | 2 cut(s) | 35, 324 |
| BmsI | GCATC | 1 cut(s) | 169 |
| BpuEI | CTTGAG | 2 cut(s) | 143, 257 |
| BsaJI | CCNNGG | 3 cut(s) | 33, 34, 495 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseBI | CCWGG | 2 cut(s) | 35, 324 |
| BseDI | CCNNGG | 3 cut(s) | 33, 34, 495 |
| BseMII | CTCAG | 1 cut(s) | 351 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| Bsh1236I | CGCG | 1 cut(s) | 497 |
| BshFI | GGCC | 2 cut(s) | 39, 214 |
| BsmAI | GTCTC | 1 cut(s) | 119 |
| BsnI | GGCC | 2 cut(s) | 39, 214 |
| Bsp1407I | TGTACA | 1 cut(s) | 378 |
| BspACI | CCGC | 2 cut(s) | 495, 497 |
| BspANI | GGCC | 2 cut(s) | 39, 214 |
| BspCNI | CTCAG | 1 cut(s) | 352 |
| BspFNI | CGCG | 1 cut(s) | 497 |
| BspLI | GGNNCC | 2 cut(s) | 20, 189 |
| BsrGI | TGTACA | 1 cut(s) | 378 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 3 cut(s) | 33, 34, 495 |
| Bst2UI | CCWGG | 2 cut(s) | 35, 324 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| BstAUI | TGTACA | 1 cut(s) | 378 |
| BstDEI | CTNAG | 2 cut(s) | 252, 360 |
| BstDSI | CCRYGG | 1 cut(s) | 495 |
| BstFNI | CGCG | 1 cut(s) | 497 |
| BstHHI | GCGC | 1 cut(s) | 370 |
| BstMAI | GTCTC | 1 cut(s) | 119 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 283 |
| BstNI | CCWGG | 2 cut(s) | 35, 324 |
| BstSCI | CCNGG | 2 cut(s) | 33, 322 |
| BstUI | CGCG | 1 cut(s) | 497 |
| BsuRI | GGCC | 2 cut(s) | 39, 214 |
| BtgI | CCRYGG | 1 cut(s) | 495 |
| CaiI | CAGNNNCTG | 1 cut(s) | 40 |
| CfoI | GCGC | 1 cut(s) | 370 |
| Cfr13I | GGNCC | 2 cut(s) | 18, 37 |
| Cfr42I | CCGCGG | 1 cut(s) | 498 |
| Csp6I | GTAC | 1 cut(s) | 379 |
| CviAII | CATG | 1 cut(s) | 376 |
| CviJI | RGCY | 8 cut(s) | 32, 39, 200, 214, 356, 405, 470, 484 |
| CviKI_1 | RGCY | 8 cut(s) | 32, 39, 200, 214, 356, 405, 470, 484 |
| CviQI | GTAC | 1 cut(s) | 379 |
| DdeI | CTNAG | 2 cut(s) | 252, 360 |
| Eco147I | AGGCCT | 1 cut(s) | 214 |
| Eco32I | GATATC | 1 cut(s) | 427 |
| Eco47I | GGWCC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 437 |
| EcoO109I | RGGNCCY | 1 cut(s) | 37 |
| EcoRII | CCWGG | 2 cut(s) | 33, 322 |
| EcoRV | GATATC | 1 cut(s) | 427 |
| FaeI | CATG | 1 cut(s) | 379 |
| FatI | CATG | 1 cut(s) | 375 |
| FauI | CCCGC | 1 cut(s) | 490 |
| FauNDI | CATATG | 2 cut(s) | 14, 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 495 |
| Fsp4HI | GCNGC | 1 cut(s) | 495 |
| FspBI | CTAG | 2 cut(s) | 201, 449 |
| FspI | TGCGCA | 1 cut(s) | 369 |
| GlaI | GCGC | 1 cut(s) | 369 |
| GluI | GCNGC | 1 cut(s) | 495 |
| HaeIII | GGCC | 2 cut(s) | 39, 214 |
| HhaI | GCGC | 1 cut(s) | 370 |
| Hin1II | CATG | 1 cut(s) | 379 |
| Hin6I | GCGC | 1 cut(s) | 368 |
| HinP1I | GCGC | 1 cut(s) | 368 |
| HindIII | AAGCTT | 1 cut(s) | 482 |
| HphI | GGTGA | 3 cut(s) | 44, 143, 268 |
| Hpy188I | TCNGA | 2 cut(s) | 340, 417 |
| Hpy188III | TCNNGA | 1 cut(s) | 67 |
| HpyAV | CCTTC | 3 cut(s) | 178, 297, 395 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 1 cut(s) | 307 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 283 |
| HpyF3I | CTNAG | 2 cut(s) | 252, 360 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92II | CATG | 1 cut(s) | 379 |
| HspAI | GCGC | 1 cut(s) | 368 |
| KspI | CCGCGG | 1 cut(s) | 498 |
| LpnPI | CCDG | 8 cut(s) | 20, 47, 53, 80, 114, 196, 309, 336 |
| LweI | GCATC | 1 cut(s) | 169 |
| MaeI | CTAG | 2 cut(s) | 201, 449 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MaeIII | GTNAC | 2 cut(s) | 50, 227 |
| MboII | GAAGA | 1 cut(s) | 410 |
| MluCI | AATT | 4 cut(s) | 72, 116, 243, 477 |
| MmeI | TCCRAC | 1 cut(s) | 402 |
| MnlI | CCTC | 3 cut(s) | 190, 281, 355 |
| MroXI | GAANNNNTTC | 1 cut(s) | 247 |
| MseI | TTAA | 4 cut(s) | 170, 332, 476, 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspA1I | CMGCKG | 1 cut(s) | 497 |
| MspR9I | CCNGG | 2 cut(s) | 35, 324 |
| MvaI | CCWGG | 2 cut(s) | 35, 324 |
| MvnI | CGCG | 1 cut(s) | 497 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 283 |
| NdeI | CATATG | 2 cut(s) | 14, 439 |
| NlaIII | CATG | 1 cut(s) | 379 |
| NlaIV | GGNNCC | 2 cut(s) | 20, 189 |
| NmuCI | GTSAC | 1 cut(s) | 50 |
| NsbI | TGCGCA | 1 cut(s) | 369 |
| OliI | CACNNNNGTG | 1 cut(s) | 350 |
| PacI | TTAATTAA | 1 cut(s) | 480 |
| PasI | CCCWGGG | 1 cut(s) | 34 |
| PceI | AGGCCT | 1 cut(s) | 214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 247 |
| PkrI | GCNGC | 1 cut(s) | 496 |
| PshBI | ATTAAT | 1 cut(s) | 332 |
| Psp6I | CCWGG | 2 cut(s) | 33, 322 |
| PspGI | CCWGG | 2 cut(s) | 33, 322 |
| PspN4I | GGNNCC | 2 cut(s) | 20, 189 |
| PspPI | GGNCC | 2 cut(s) | 18, 37 |
| PstNI | CAGNNNCTG | 1 cut(s) | 40 |
| RsaI | GTAC | 1 cut(s) | 380 |
| RsaNI | GTAC | 1 cut(s) | 379 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SacII | CCGCGG | 1 cut(s) | 498 |
| SaqAI | TTAA | 4 cut(s) | 170, 332, 476, 480 |
| SatI | GCNGC | 1 cut(s) | 495 |
| Sau96I | GGNCC | 2 cut(s) | 18, 37 |
| ScrFI | CCNGG | 2 cut(s) | 35, 324 |
| SetI | ASST | 5 cut(s) | 234, 258, 366, 472, 486 |
| SfaNI | GCATC | 1 cut(s) | 169 |
| Sfr303I | CCGCGG | 1 cut(s) | 498 |
| SgrBI | CCGCGG | 1 cut(s) | 498 |
| SinI | GGWCC | 1 cut(s) | 18 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 2 cut(s) | 122, 272 |
| SmoI | CTYRAG | 2 cut(s) | 122, 272 |
| Sse9I | AATT | 4 cut(s) | 72, 116, 243, 477 |
| SseBI | AGGCCT | 1 cut(s) | 214 |
| SsiI | CCGC | 2 cut(s) | 495, 497 |
| SspMI | CTAG | 2 cut(s) | 201, 449 |
| StuI | AGGCCT | 1 cut(s) | 214 |
| StyD4I | CCNGG | 2 cut(s) | 33, 322 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TasI | AATT | 4 cut(s) | 72, 116, 243, 477 |
| TatI | WGTACW | 1 cut(s) | 378 |
| TauI | GCSGC | 1 cut(s) | 497 |
| Tru1I | TTAA | 4 cut(s) | 170, 332, 476, 480 |
| Tru9I | TTAA | 4 cut(s) | 170, 332, 476, 480 |
| TseFI | GTSAC | 1 cut(s) | 50 |
| Tsp45I | GTSAC | 1 cut(s) | 50 |
| TspDTI | ATGAA | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 1 cut(s) | 18 |
| VspI | ATTAAT | 1 cut(s) | 332 |
| XapI | RAATTY | 1 cut(s) | 72 |
| XmnI | GAANNNNTTC | 1 cut(s) | 247 |
| XspI | CTAG | 2 cut(s) | 201, 449 |