Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1459, 1568 |
| Acc65I | GGTACC | 3 cut(s) | 258, 295, 1392 |
| AccB1I | GGYRCC | 4 cut(s) | 258, 295, 499, 1392 |
| AccII | CGCG | 2 cut(s) | 959, 1138 |
| AciI | CCGC | 5 cut(s) | 957, 1136, 1275, 1313, 1417 |
| AclWI | GGATC | 5 cut(s) | 596, 656, 691, 731, 744 |
| AcoI | YGGCCR | 1 cut(s) | 590 |
| AcsI | RAATTY | 6 cut(s) | 15, 39, 236, 727, 877, 893 |
| AcuI | CTGAAG | 1 cut(s) | 429 |
| AfaI | GTAC | 5 cut(s) | 260, 297, 358, 562, 1394 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 509, 1171 |
| AgsI | TTSAA | 4 cut(s) | 128, 215, 725, 1584 |
| AjnI | CCWGG | 2 cut(s) | 1072, 1164 |
| AleI | CACNNNNGTG | 1 cut(s) | 1349 |
| AluBI | AGCT | 3 cut(s) | 47, 1040, 1562 |
| AluI | AGCT | 3 cut(s) | 47, 1040, 1562 |
| Alw21I | GWGCWC | 1 cut(s) | 1042 |
| Alw26I | GTCTC | 5 cut(s) | 179, 1015, 1404, 1480, 1504 |
| AlwI | GGATC | 5 cut(s) | 596, 656, 691, 731, 744 |
| Ama87I | CYCGRG | 1 cut(s) | 964 |
| AoxI | GGCC | 3 cut(s) | 590, 954, 1027 |
| ApeKI | GCWGC | 1 cut(s) | 1430 |
| ApoI | RAATTY | 6 cut(s) | 15, 39, 236, 727, 877, 893 |
| Asp718I | GGTACC | 3 cut(s) | 258, 295, 1392 |
| AspLEI | GCGC | 1 cut(s) | 1549 |
| AspS9I | GGNCC | 4 cut(s) | 512, 932, 954, 1027 |
| AsuHPI | GGTGA | 5 cut(s) | 148, 488, 853, 894, 1420 |
| AvaI | CYCGRG | 1 cut(s) | 964 |
| AvaII | GGWCC | 2 cut(s) | 512, 932 |
| AxyI | CCTNAGG | 1 cut(s) | 495 |
| BalI | TGGCCA | 1 cut(s) | 592 |
| BamHI | GGATCC | 1 cut(s) | 736 |
| BanI | GGYRCC | 4 cut(s) | 258, 295, 499, 1392 |
| BanII | GRGCYC | 1 cut(s) | 1042 |
| Bbv12I | GWGCWC | 1 cut(s) | 1042 |
| BbvI | GCAGC | 1 cut(s) | 1417 |
| BccI | CCATC | 4 cut(s) | 503, 673, 676, 1134 |
| BciT130I | CCWGG | 2 cut(s) | 1074, 1166 |
| BclI | TGATCA | 1 cut(s) | 421 |
| BcoDI | GTCTC | 5 cut(s) | 179, 1015, 1404, 1480, 1504 |
| BfaI | CTAG | 1 cut(s) | 227 |
| BfuAI | ACCTGC | 2 cut(s) | 1459, 1568 |
| BisI | GCNGC | 4 cut(s) | 957, 1275, 1417, 1431 |
| BlsI | GCNGC | 4 cut(s) | 958, 1276, 1418, 1432 |
| BmcAI | AGTACT | 1 cut(s) | 562 |
| Bme1390I | CCNGG | 2 cut(s) | 1074, 1166 |
| Bme18I | GGWCC | 2 cut(s) | 512, 932 |
| BmeT110I | CYCGRG | 1 cut(s) | 964 |
| BmgT120I | GGNCC | 4 cut(s) | 512, 932, 954, 1027 |
| BmiI | GGNNCC | 9 cut(s) | 260, 297, 399, 472, 501, 738, 955, 1028, 1394 |
| BmrFI | CCNGG | 2 cut(s) | 1074, 1166 |
| BmrI | ACTGGG | 2 cut(s) | 1228, 1356 |
| BmsI | GCATC | 4 cut(s) | 258, 367, 1210, 1261 |
| BmuI | ACTGGG | 2 cut(s) | 1228, 1356 |
| BpuEI | CTTGAG | 1 cut(s) | 1220 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1185 |
| BsaI | GGTCTC | 1 cut(s) | 1015 |
| BsaJI | CCNNGG | 1 cut(s) | 963 |
| BsaWI | WCCGGW | 2 cut(s) | 473, 787 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 509, 1171 |
| Bse1I | ACTGG | 8 cut(s) | 248, 272, 399, 821, 1064, 1234, 1351, 1396 |
| Bse21I | CCTNAGG | 1 cut(s) | 495 |
| Bse3DI | GCAATG | 1 cut(s) | 1432 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1185 |
| BseBI | CCWGG | 2 cut(s) | 1074, 1166 |
| BseDI | CCNNGG | 1 cut(s) | 963 |
| BseGI | GGATG | 5 cut(s) | 301, 489, 527, 664, 1225 |
| BseJI | GATNNNNATC | 1 cut(s) | 1185 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 509, 1171 |
| BseMI | GCAATG | 1 cut(s) | 1432 |
| BseMII | CTCAG | 5 cut(s) | 174, 233, 509, 1191, 1436 |
| BseNI | ACTGG | 8 cut(s) | 248, 272, 399, 821, 1064, 1234, 1351, 1396 |
| BseRI | GAGGAG | 2 cut(s) | 884, 1356 |
| BseXI | GCAGC | 1 cut(s) | 1417 |
| BsgI | GTGCAG | 2 cut(s) | 186, 587 |
| Bsh1236I | CGCG | 2 cut(s) | 959, 1138 |
| BshFI | GGCC | 3 cut(s) | 592, 956, 1029 |
| BshNI | GGYRCC | 4 cut(s) | 258, 295, 499, 1392 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1042 |
| BsiHKCI | CYCGRG | 1 cut(s) | 964 |
| BsiSI | CCGG | 2 cut(s) | 474, 788 |
| BslFI | GGGAC | 1 cut(s) | 356 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 509, 1171 |
| BsmAI | GTCTC | 5 cut(s) | 179, 1015, 1404, 1480, 1504 |
| BsmBI | CGTCTC | 1 cut(s) | 1480 |
| BsmFI | GGGAC | 1 cut(s) | 356 |
| BsmI | GAATGC | 1 cut(s) | 1059 |
| BsnI | GGCC | 3 cut(s) | 592, 956, 1029 |
| Bso31I | GGTCTC | 1 cut(s) | 1015 |
| BsoBI | CYCGRG | 1 cut(s) | 964 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1042 |
| Bsp143I | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| BspACI | CCGC | 5 cut(s) | 957, 1136, 1275, 1313, 1417 |
| BspANI | GGCC | 3 cut(s) | 592, 956, 1029 |
| BspCNI | CTCAG | 5 cut(s) | 175, 232, 508, 1190, 1437 |
| BspFNI | CGCG | 2 cut(s) | 959, 1138 |
| BspLI | GGNNCC | 9 cut(s) | 260, 297, 399, 472, 501, 738, 955, 1028, 1394 |
| BspMI | ACCTGC | 2 cut(s) | 1459, 1568 |
| BspPI | GGATC | 5 cut(s) | 596, 656, 691, 731, 744 |
| BspT107I | GGYRCC | 4 cut(s) | 258, 295, 499, 1392 |
| BspTNI | GGTCTC | 1 cut(s) | 1015 |
| BsrDI | GCAATG | 1 cut(s) | 1432 |
| BsrI | ACTGG | 8 cut(s) | 248, 272, 399, 821, 1064, 1234, 1351, 1396 |
| BssECI | CCNNGG | 1 cut(s) | 963 |
| BssMI | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| Bst2UI | CCWGG | 2 cut(s) | 1074, 1166 |
| Bst4CI | ACNGT | 4 cut(s) | 565, 628, 975, 1380 |
| Bst6I | CTCTTC | 1 cut(s) | 786 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1544 |
| BstC8I | GCNNGC | 2 cut(s) | 1451, 1593 |
| BstDEI | CTNAG | 7 cut(s) | 11, 183, 219, 495, 840, 1177, 1445 |
| BstF5I | GGATG | 5 cut(s) | 301, 489, 527, 664, 1225 |
| BstFNI | CGCG | 2 cut(s) | 959, 1138 |
| BstHHI | GCGC | 1 cut(s) | 1549 |
| BstKTI | GATC | 5 cut(s) | 424, 604, 664, 699, 739 |
| BstMAI | GTCTC | 5 cut(s) | 179, 1015, 1404, 1480, 1504 |
| BstMBI | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1422, 1544, 1553 |
| BstNI | CCWGG | 2 cut(s) | 1074, 1166 |
| BstNSI | RCATGY | 3 cut(s) | 384, 543, 1453 |
| BstSCI | CCNGG | 2 cut(s) | 1072, 1164 |
| BstUI | CGCG | 2 cut(s) | 959, 1138 |
| BstV1I | GCAGC | 1 cut(s) | 1417 |
| BstX2I | RGATCY | 2 cut(s) | 696, 736 |
| BstYI | RGATCY | 2 cut(s) | 696, 736 |
| Bsu36I | CCTNAGG | 1 cut(s) | 495 |
| BsuRI | GGCC | 3 cut(s) | 592, 956, 1029 |
| BtgZI | GCGATG | 1 cut(s) | 1153 |
| BtsCI | GGATG | 5 cut(s) | 301, 489, 527, 664, 1225 |
| BtsI | GCAGTG | 1 cut(s) | 446 |
| BtsIMutI | CAGTG | 7 cut(s) | 431, 446, 633, 828, 1241, 1344, 1536 |
| BveI | ACCTGC | 2 cut(s) | 1459, 1568 |
| Cac8I | GCNNGC | 2 cut(s) | 1451, 1593 |
| CfoI | GCGC | 1 cut(s) | 1549 |
| Cfr13I | GGNCC | 4 cut(s) | 512, 932, 954, 1027 |
| CseI | GACGC | 1 cut(s) | 948 |
| CsiI | ACCWGGT | 1 cut(s) | 1164 |
| Csp6I | GTAC | 5 cut(s) | 259, 296, 357, 561, 1393 |
| CviAII | CATG | 8 cut(s) | 360, 381, 452, 540, 906, 1403, 1450, 1637 |
| CviQI | GTAC | 5 cut(s) | 259, 296, 357, 561, 1393 |
| DdeI | CTNAG | 7 cut(s) | 11, 183, 219, 495, 840, 1177, 1445 |
| DpnI | GATC | 5 cut(s) | 423, 603, 663, 698, 738 |
| DpnII | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| EaeI | YGGCCR | 1 cut(s) | 590 |
| Eam1104I | CTCTTC | 1 cut(s) | 786 |
| EarI | CTCTTC | 1 cut(s) | 786 |
| Ecl136II | GAGCTC | 1 cut(s) | 1040 |
| Eco24I | GRGCYC | 1 cut(s) | 1042 |
| Eco31I | GGTCTC | 1 cut(s) | 1015 |
| Eco32I | GATATC | 1 cut(s) | 1092 |
| Eco47I | GGWCC | 2 cut(s) | 512, 932 |
| Eco53kI | GAGCTC | 1 cut(s) | 1040 |
| Eco57I | CTGAAG | 1 cut(s) | 429 |
| Eco81I | CCTNAGG | 1 cut(s) | 495 |
| Eco88I | CYCGRG | 1 cut(s) | 964 |
| EcoICRI | GAGCTC | 1 cut(s) | 1040 |
| EcoRI | GAATTC | 1 cut(s) | 877 |
| EcoRII | CCWGG | 2 cut(s) | 1072, 1164 |
| EcoRV | GATATC | 1 cut(s) | 1092 |
| EcoT22I | ATGCAT | 1 cut(s) | 382 |
| EcoT38I | GRGCYC | 1 cut(s) | 1042 |
| Esp3I | CGTCTC | 1 cut(s) | 1480 |
| FaeI | CATG | 8 cut(s) | 363, 384, 455, 543, 909, 1406, 1453, 1640 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 606, 638 |
| FaqI | GGGAC | 1 cut(s) | 356 |
| FatI | CATG | 8 cut(s) | 359, 380, 451, 539, 905, 1402, 1449, 1636 |
| FauI | CCCGC | 1 cut(s) | 1306 |
| FbaI | TGATCA | 1 cut(s) | 421 |
| Fnu4HI | GCNGC | 4 cut(s) | 957, 1275, 1417, 1431 |
| FokI | GGATG | 5 cut(s) | 288, 476, 514, 671, 1232 |
| FriOI | GRGCYC | 1 cut(s) | 1042 |
| Fsp4HI | GCNGC | 4 cut(s) | 957, 1275, 1417, 1431 |
| FspBI | CTAG | 1 cut(s) | 227 |
| GlaI | GCGC | 1 cut(s) | 1548 |
| GluI | GCNGC | 4 cut(s) | 957, 1275, 1417, 1431 |
| HaeIII | GGCC | 3 cut(s) | 592, 956, 1029 |
| HapII | CCGG | 2 cut(s) | 474, 788 |
| HgaI | GACGC | 1 cut(s) | 948 |
| HhaI | GCGC | 1 cut(s) | 1549 |
| Hin1II | CATG | 8 cut(s) | 363, 384, 455, 543, 909, 1406, 1453, 1640 |
| Hin6I | GCGC | 1 cut(s) | 1547 |
| HinP1I | GCGC | 1 cut(s) | 1547 |
| HincII | GTYRAC | 1 cut(s) | 782 |
| HindII | GTYRAC | 1 cut(s) | 782 |
| HinfI | GANTC | 3 cut(s) | 520, 1129, 1175 |
| HpaII | CCGG | 2 cut(s) | 474, 788 |
| HphI | GGTGA | 5 cut(s) | 148, 488, 853, 894, 1420 |
| Hpy166II | GTNNAC | 4 cut(s) | 782, 826, 1344, 1411 |
| Hpy188III | TCNNGA | 4 cut(s) | 718, 966, 1199, 1625 |
| Hpy8I | GTNNAC | 4 cut(s) | 782, 826, 1344, 1411 |
| HpyAV | CCTTC | 7 cut(s) | 358, 404, 426, 790, 803, 1108, 1508 |
| HpyCH4III | ACNGT | 4 cut(s) | 565, 628, 975, 1380 |
| HpyCH4IV | ACGT | 1 cut(s) | 1207 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1422, 1544, 1553 |
| HpyF3I | CTNAG | 7 cut(s) | 11, 183, 219, 495, 840, 1177, 1445 |
| HpySE526I | ACGT | 1 cut(s) | 1207 |
| Hsp92II | CATG | 8 cut(s) | 363, 384, 455, 543, 909, 1406, 1453, 1640 |
| HspAI | GCGC | 1 cut(s) | 1547 |
| KpnI | GGTACC | 3 cut(s) | 262, 299, 1396 |
| Ksp22I | TGATCA | 1 cut(s) | 421 |
| Kzo9I | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| LmnI | GCTCC | 3 cut(s) | 403, 476, 871 |
| Lsp1109I | GCAGC | 1 cut(s) | 1417 |
| LweI | GCATC | 4 cut(s) | 258, 367, 1210, 1261 |
| MabI | ACCWGGT | 1 cut(s) | 1164 |
| MaeI | CTAG | 1 cut(s) | 227 |
| MaeII | ACGT | 1 cut(s) | 1207 |
| MaeIII | GTNAC | 4 cut(s) | 76, 278, 476, 900 |
| MalI | GATC | 5 cut(s) | 423, 603, 663, 698, 738 |
| MboI | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| MboII | GAAGA | 4 cut(s) | 162, 803, 1045, 1124 |
| MfeI | CAATTG | 1 cut(s) | 936 |
| MflI | RGATCY | 2 cut(s) | 696, 736 |
| MhlI | GDGCHC | 1 cut(s) | 1042 |
| MlsI | TGGCCA | 1 cut(s) | 592 |
| MluCI | AATT | 8 cut(s) | 15, 39, 236, 727, 877, 893, 936, 1494 |
| MluNI | TGGCCA | 1 cut(s) | 592 |
| MlyI | GAGTC | 1 cut(s) | 1169 |
| MmeI | TCCRAC | 2 cut(s) | 53, 1365 |
| Mox20I | TGGCCA | 1 cut(s) | 592 |
| Mph1103I | ATGCAT | 1 cut(s) | 382 |
| MscI | TGGCCA | 1 cut(s) | 592 |
| MseI | TTAA | 6 cut(s) | 147, 465, 731, 1125, 1301, 1455 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1349 |
| Msp20I | TGGCCA | 1 cut(s) | 592 |
| MspA1I | CMGCKG | 1 cut(s) | 1277 |
| MspI | CCGG | 2 cut(s) | 474, 788 |
| MspR9I | CCNGG | 2 cut(s) | 1074, 1166 |
| MunI | CAATTG | 1 cut(s) | 936 |
| Mva1269I | GAATGC | 1 cut(s) | 1059 |
| MvaI | CCWGG | 2 cut(s) | 1074, 1166 |
| MvnI | CGCG | 2 cut(s) | 959, 1138 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1422, 1544, 1553 |
| NdeII | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| NlaIII | CATG | 8 cut(s) | 363, 384, 455, 543, 909, 1406, 1453, 1640 |
| NlaIV | GGNNCC | 9 cut(s) | 260, 297, 399, 472, 501, 738, 955, 1028, 1394 |
| NmuCI | GTSAC | 4 cut(s) | 76, 278, 476, 900 |
| NsiI | ATGCAT | 1 cut(s) | 382 |
| NspI | RCATGY | 3 cut(s) | 384, 543, 1453 |
| OliI | CACNNNNGTG | 1 cut(s) | 1349 |
| PaeI | GCATGC | 1 cut(s) | 1453 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 971 |
| PctI | GAATGC | 1 cut(s) | 1059 |
| PfeI | GAWTC | 2 cut(s) | 520, 1129 |
| PkrI | GCNGC | 4 cut(s) | 958, 1276, 1418, 1432 |
| PleI | GAGTC | 1 cut(s) | 1169 |
| PpsI | GAGTC | 1 cut(s) | 1169 |
| Psp124BI | GAGCTC | 1 cut(s) | 1042 |
| Psp6I | CCWGG | 2 cut(s) | 1072, 1164 |
| PspGI | CCWGG | 2 cut(s) | 1072, 1164 |
| PspN4I | GGNNCC | 9 cut(s) | 260, 297, 399, 472, 501, 738, 955, 1028, 1394 |
| PspPI | GGNCC | 4 cut(s) | 512, 932, 954, 1027 |
| PsuI | RGATCY | 2 cut(s) | 696, 736 |
| RsaI | GTAC | 5 cut(s) | 260, 297, 358, 562, 1394 |
| RsaNI | GTAC | 5 cut(s) | 259, 296, 357, 561, 1393 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1349 |
| SacI | GAGCTC | 1 cut(s) | 1042 |
| SaqAI | TTAA | 6 cut(s) | 147, 465, 731, 1125, 1301, 1455 |
| SatI | GCNGC | 4 cut(s) | 957, 1275, 1417, 1431 |
| Sau3AI | GATC | 5 cut(s) | 421, 601, 661, 696, 736 |
| Sau96I | GGNCC | 4 cut(s) | 512, 932, 954, 1027 |
| ScaI | AGTACT | 1 cut(s) | 562 |
| SchI | GAGTC | 1 cut(s) | 1169 |
| ScrFI | CCNGG | 2 cut(s) | 1074, 1166 |
| SduI | GDGCHC | 1 cut(s) | 1042 |
| SexAI | ACCWGGT | 1 cut(s) | 1164 |
| SfaNI | GCATC | 4 cut(s) | 258, 367, 1210, 1261 |
| SinI | GGWCC | 2 cut(s) | 512, 932 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1349 |
| SmlI | CTYRAG | 1 cut(s) | 1199 |
| SmoI | CTYRAG | 1 cut(s) | 1199 |
| SphI | GCATGC | 1 cut(s) | 1453 |
| Sse9I | AATT | 8 cut(s) | 15, 39, 236, 727, 877, 893, 936, 1494 |
| SsiI | CCGC | 5 cut(s) | 957, 1136, 1275, 1313, 1417 |
| SspMI | CTAG | 1 cut(s) | 227 |
| SstI | GAGCTC | 1 cut(s) | 1042 |
| StyD4I | CCNGG | 2 cut(s) | 1072, 1164 |
| TaaI | ACNGT | 4 cut(s) | 565, 628, 975, 1380 |
| TaiI | ACGT | 1 cut(s) | 1210 |
| TaqI | TCGA | 2 cut(s) | 1094, 1156 |
| TasI | AATT | 8 cut(s) | 15, 39, 236, 727, 877, 893, 936, 1494 |
| TatI | WGTACW | 2 cut(s) | 356, 560 |
| TauI | GCSGC | 3 cut(s) | 959, 1277, 1419 |
| TfiI | GAWTC | 2 cut(s) | 520, 1129 |
| Tru1I | TTAA | 6 cut(s) | 147, 465, 731, 1125, 1301, 1455 |
| Tru9I | TTAA | 6 cut(s) | 147, 465, 731, 1125, 1301, 1455 |
| TscAI | CASTG | 7 cut(s) | 431, 446, 633, 828, 1241, 1351, 1536 |
| TseFI | GTSAC | 4 cut(s) | 76, 278, 476, 900 |
| TseI | GCWGC | 1 cut(s) | 1430 |
| Tsp45I | GTSAC | 4 cut(s) | 76, 278, 476, 900 |
| TspDTI | ATGAA | 3 cut(s) | 99, 478, 1184 |
| TspGWI | ACGGA | 1 cut(s) | 720 |
| TspRI | CASTG | 7 cut(s) | 431, 446, 633, 828, 1241, 1351, 1536 |
| VpaK11BI | GGWCC | 2 cut(s) | 512, 932 |
| XapI | RAATTY | 6 cut(s) | 15, 39, 236, 727, 877, 893 |
| XceI | RCATGY | 3 cut(s) | 384, 543, 1453 |
| XspI | CTAG | 1 cut(s) | 227 |
| ZrmI | AGTACT | 1 cut(s) | 562 |
| Zsp2I | ATGCAT | 1 cut(s) | 382 |