Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 247 |
| AccI | GTMKAC | 2 cut(s) | 464, 586 |
| AciI | CCGC | 2 cut(s) | 227, 266 |
| AclWI | GGATC | 3 cut(s) | 292, 487, 539 |
| AcoI | YGGCCR | 1 cut(s) | 555 |
| AfaI | GTAC | 2 cut(s) | 166, 567 |
| AfeI | AGCGCT | 1 cut(s) | 792 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 247, 327 |
| AluBI | AGCT | 7 cut(s) | 91, 107, 161, 175, 365, 619, 665 |
| AluI | AGCT | 7 cut(s) | 91, 107, 161, 175, 365, 619, 665 |
| Alw26I | GTCTC | 3 cut(s) | 119, 307, 820 |
| AlwI | GGATC | 3 cut(s) | 292, 487, 539 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 91 |
| Aor51HI | AGCGCT | 1 cut(s) | 792 |
| AoxI | GGCC | 5 cut(s) | 224, 249, 555, 721, 747 |
| ApeKI | GCWGC | 3 cut(s) | 91, 524, 788 |
| AspLEI | GCGC | 1 cut(s) | 793 |
| AspS9I | GGNCC | 3 cut(s) | 250, 712, 722 |
| AsuC2I | CCSGG | 1 cut(s) | 725 |
| AvaII | GGWCC | 1 cut(s) | 712 |
| BaeGI | GKGCMC | 1 cut(s) | 241 |
| BalI | TGGCCA | 1 cut(s) | 557 |
| BanII | GRGCYC | 1 cut(s) | 739 |
| BauI | CACGAG | 1 cut(s) | 666 |
| BbvI | GCAGC | 3 cut(s) | 78, 511, 800 |
| BccI | CCATC | 4 cut(s) | 55, 325, 436, 447 |
| BceAI | ACGGC | 2 cut(s) | 312, 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 674, 708 |
| BciVI | GTATCC | 1 cut(s) | 417 |
| BcnI | CCSGG | 1 cut(s) | 725 |
| BcoDI | GTCTC | 3 cut(s) | 119, 307, 820 |
| BfaI | CTAG | 2 cut(s) | 183, 348 |
| BfoI | RGCGCY | 1 cut(s) | 794 |
| BfuI | GTATCC | 1 cut(s) | 417 |
| BisI | GCNGC | 4 cut(s) | 92, 227, 525, 789 |
| BlsI | GCNGC | 4 cut(s) | 93, 228, 526, 790 |
| Bme1390I | CCNGG | 1 cut(s) | 725 |
| Bme18I | GGWCC | 1 cut(s) | 712 |
| BmgT120I | GGNCC | 3 cut(s) | 250, 712, 722 |
| BmiI | GGNNCC | 4 cut(s) | 40, 394, 713, 714 |
| BmrFI | CCNGG | 1 cut(s) | 725 |
| BmrI | ACTGGG | 2 cut(s) | 235, 613 |
| BmuI | ACTGGG | 2 cut(s) | 235, 613 |
| BpmI | CTGGAG | 2 cut(s) | 68, 751 |
| BpuEI | CTTGAG | 1 cut(s) | 83 |
| BpuMI | CCSGG | 1 cut(s) | 725 |
| BsaI | GGTCTC | 2 cut(s) | 119, 307 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 384, 414 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 247, 327 |
| Bse1I | ACTGG | 5 cut(s) | 241, 353, 425, 555, 608 |
| BseGI | GGATG | 1 cut(s) | 317 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 247, 327 |
| BseMII | CTCAG | 1 cut(s) | 473 |
| BseNI | ACTGG | 5 cut(s) | 241, 353, 425, 555, 608 |
| BseRI | GAGGAG | 1 cut(s) | 86 |
| BseSI | GKGCMC | 1 cut(s) | 241 |
| BseXI | GCAGC | 3 cut(s) | 78, 511, 800 |
| BseYI | CCCAGC | 1 cut(s) | 758 |
| BshFI | GGCC | 5 cut(s) | 226, 251, 557, 723, 749 |
| BsiSI | CCGG | 1 cut(s) | 725 |
| BslFI | GGGAC | 3 cut(s) | 425, 725, 839 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 247, 327 |
| BsmAI | GTCTC | 3 cut(s) | 119, 307, 820 |
| BsmFI | GGGAC | 3 cut(s) | 425, 725, 839 |
| BsnI | GGCC | 5 cut(s) | 226, 251, 557, 723, 749 |
| Bso31I | GGTCTC | 2 cut(s) | 119, 307 |
| Bsp1286I | GDGCHC | 2 cut(s) | 241, 739 |
| Bsp143I | GATC | 4 cut(s) | 284, 492, 544, 685 |
| BspACI | CCGC | 2 cut(s) | 227, 266 |
| BspANI | GGCC | 5 cut(s) | 226, 251, 557, 723, 749 |
| BspCNI | CTCAG | 1 cut(s) | 472 |
| BspHI | TCATGA | 1 cut(s) | 592 |
| BspLI | GGNNCC | 4 cut(s) | 40, 394, 713, 714 |
| BspPI | GGATC | 3 cut(s) | 292, 487, 539 |
| BspTNI | GGTCTC | 2 cut(s) | 119, 307 |
| BsrI | ACTGG | 5 cut(s) | 241, 353, 425, 555, 608 |
| BssMI | GATC | 4 cut(s) | 284, 492, 544, 685 |
| BssNAI | GTATAC | 1 cut(s) | 465 |
| BssSI | CACGAG | 1 cut(s) | 666 |
| Bst1107I | GTATAC | 1 cut(s) | 465 |
| Bst2BI | CACGAG | 1 cut(s) | 666 |
| Bst4CI | ACNGT | 4 cut(s) | 469, 570, 661, 831 |
| Bst6I | CTCTTC | 2 cut(s) | 117, 816 |
| BstDEI | CTNAG | 3 cut(s) | 459, 561, 581 |
| BstF5I | GGATG | 1 cut(s) | 317 |
| BstH2I | RGCGCY | 1 cut(s) | 794 |
| BstHHI | GCGC | 1 cut(s) | 793 |
| BstKTI | GATC | 4 cut(s) | 287, 495, 547, 688 |
| BstMAI | GTCTC | 3 cut(s) | 119, 307, 820 |
| BstMBI | GATC | 4 cut(s) | 284, 492, 544, 685 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 21 |
| BstSCI | CCNGG | 1 cut(s) | 723 |
| BstSLI | GKGCMC | 1 cut(s) | 241 |
| BstV1I | GCAGC | 3 cut(s) | 78, 511, 800 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 766, 822 |
| BstZ17I | GTATAC | 1 cut(s) | 465 |
| BsuI | GTATCC | 1 cut(s) | 417 |
| BsuRI | GGCC | 5 cut(s) | 226, 251, 557, 723, 749 |
| BtsCI | GGATG | 1 cut(s) | 317 |
| BtsIMutI | CAGTG | 2 cut(s) | 474, 548 |
| CaiI | CAGNNNCTG | 1 cut(s) | 91 |
| CciI | TCATGA | 1 cut(s) | 592 |
| CfoI | GCGC | 1 cut(s) | 793 |
| Cfr13I | GGNCC | 3 cut(s) | 250, 712, 722 |
| CseI | GACGC | 1 cut(s) | 530 |
| Csp6I | GTAC | 2 cut(s) | 165, 566 |
| CviAII | CATG | 7 cut(s) | 281, 304, 497, 593, 612, 679, 858 |
| CviQI | GTAC | 2 cut(s) | 165, 566 |
| DdeI | CTNAG | 3 cut(s) | 459, 561, 581 |
| DpnI | GATC | 4 cut(s) | 286, 494, 546, 687 |
| DpnII | GATC | 4 cut(s) | 284, 492, 544, 685 |
| EaeI | YGGCCR | 1 cut(s) | 555 |
| Eam1104I | CTCTTC | 2 cut(s) | 117, 816 |
| EarI | CTCTTC | 2 cut(s) | 117, 816 |
| Eco24I | GRGCYC | 1 cut(s) | 739 |
| Eco31I | GGTCTC | 2 cut(s) | 119, 307 |
| Eco47I | GGWCC | 1 cut(s) | 712 |
| Eco47III | AGCGCT | 1 cut(s) | 792 |
| EcoO109I | RGGNCCY | 1 cut(s) | 712 |
| EcoT38I | GRGCYC | 1 cut(s) | 739 |
| FaeI | CATG | 7 cut(s) | 284, 307, 500, 596, 615, 682, 861 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 129, 161 |
| FaqI | GGGAC | 3 cut(s) | 425, 725, 839 |
| FatI | CATG | 7 cut(s) | 280, 303, 496, 592, 611, 678, 857 |
| FauNDI | CATATG | 1 cut(s) | 407 |
| FblI | GTMKAC | 2 cut(s) | 464, 586 |
| Fnu4HI | GCNGC | 4 cut(s) | 92, 227, 525, 789 |
| FokI | GGATG | 1 cut(s) | 304 |
| FriOI | GRGCYC | 1 cut(s) | 739 |
| Fsp4HI | GCNGC | 4 cut(s) | 92, 227, 525, 789 |
| FspBI | CTAG | 2 cut(s) | 183, 348 |
| GlaI | GCGC | 1 cut(s) | 792 |
| GluI | GCNGC | 4 cut(s) | 92, 227, 525, 789 |
| GsaI | CCCAGC | 1 cut(s) | 762 |
| GsuI | CTGGAG | 2 cut(s) | 68, 751 |
| HaeII | RGCGCY | 1 cut(s) | 794 |
| HaeIII | GGCC | 5 cut(s) | 226, 251, 557, 723, 749 |
| HapII | CCGG | 1 cut(s) | 725 |
| HgaI | GACGC | 1 cut(s) | 530 |
| HhaI | GCGC | 1 cut(s) | 793 |
| Hin1II | CATG | 7 cut(s) | 284, 307, 500, 596, 615, 682, 861 |
| Hin6I | GCGC | 1 cut(s) | 791 |
| HinP1I | GCGC | 1 cut(s) | 791 |
| HinfI | GANTC | 5 cut(s) | 77, 373, 413, 480, 503 |
| HpaII | CCGG | 1 cut(s) | 725 |
| Hpy166II | GTNNAC | 4 cut(s) | 271, 465, 532, 587 |
| Hpy188I | TCNGA | 4 cut(s) | 54, 154, 418, 455 |
| Hpy188III | TCNNGA | 5 cut(s) | 85, 100, 593, 668, 730 |
| Hpy8I | GTNNAC | 4 cut(s) | 271, 465, 532, 587 |
| HpyAV | CCTTC | 2 cut(s) | 739, 809 |
| HpyCH4III | ACNGT | 4 cut(s) | 469, 570, 661, 831 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 21 |
| HpyF3I | CTNAG | 3 cut(s) | 459, 561, 581 |
| Hsp92II | CATG | 7 cut(s) | 284, 307, 500, 596, 615, 682, 861 |
| HspAI | GCGC | 1 cut(s) | 791 |
| KflI | GGGWCCC | 1 cut(s) | 712 |
| Kzo9I | GATC | 4 cut(s) | 284, 492, 544, 685 |
| LmnI | GCTCC | 3 cut(s) | 38, 99, 392 |
| Lsp1109I | GCAGC | 3 cut(s) | 78, 511, 800 |
| MaeI | CTAG | 2 cut(s) | 183, 348 |
| MaeIII | GTNAC | 1 cut(s) | 78 |
| MalI | GATC | 4 cut(s) | 286, 494, 546, 687 |
| MboI | GATC | 4 cut(s) | 284, 492, 544, 685 |
| MboII | GAAGA | 3 cut(s) | 134, 693, 803 |
| MhlI | GDGCHC | 2 cut(s) | 241, 739 |
| MlsI | TGGCCA | 1 cut(s) | 557 |
| MluCI | AATT | 2 cut(s) | 70, 573 |
| MluNI | TGGCCA | 1 cut(s) | 557 |
| MlyI | GAGTC | 4 cut(s) | 86, 382, 407, 489 |
| MmeI | TCCRAC | 2 cut(s) | 478, 839 |
| Mox20I | TGGCCA | 1 cut(s) | 557 |
| MscI | TGGCCA | 1 cut(s) | 557 |
| MseI | TTAA | 2 cut(s) | 171, 261 |
| MslI | CAYNNNNRTG | 1 cut(s) | 597 |
| Msp20I | TGGCCA | 1 cut(s) | 557 |
| MspI | CCGG | 1 cut(s) | 725 |
| MspR9I | CCNGG | 1 cut(s) | 725 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 21 |
| NciI | CCSGG | 1 cut(s) | 725 |
| NdeI | CATATG | 1 cut(s) | 407 |
| NdeII | GATC | 4 cut(s) | 284, 492, 544, 685 |
| NlaIII | CATG | 7 cut(s) | 284, 307, 500, 596, 615, 682, 861 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 394, 713, 714 |
| NmuCI | GTSAC | 1 cut(s) | 78 |
| PagI | TCATGA | 1 cut(s) | 592 |
| PfeI | GAWTC | 1 cut(s) | 503 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 247 |
| PkrI | GCNGC | 4 cut(s) | 93, 228, 526, 790 |
| PleI | GAGTC | 4 cut(s) | 85, 381, 407, 488 |
| PpsI | GAGTC | 4 cut(s) | 85, 381, 407, 488 |
| PpuMI | RGGWCCY | 1 cut(s) | 712 |
| Psp5II | RGGWCCY | 1 cut(s) | 712 |
| PspFI | CCCAGC | 1 cut(s) | 758 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 394, 713, 714 |
| PspPI | GGNCC | 3 cut(s) | 250, 712, 722 |
| PspPPI | RGGWCCY | 1 cut(s) | 712 |
| PstNI | CAGNNNCTG | 1 cut(s) | 91 |
| RsaI | GTAC | 2 cut(s) | 166, 567 |
| RsaNI | GTAC | 2 cut(s) | 165, 566 |
| RseI | CAYNNNNRTG | 1 cut(s) | 597 |
| SaqAI | TTAA | 2 cut(s) | 171, 261 |
| SatI | GCNGC | 4 cut(s) | 92, 227, 525, 789 |
| Sau3AI | GATC | 4 cut(s) | 284, 492, 544, 685 |
| Sau96I | GGNCC | 3 cut(s) | 250, 712, 722 |
| SchI | GAGTC | 4 cut(s) | 86, 382, 407, 489 |
| ScrFI | CCNGG | 1 cut(s) | 725 |
| SduI | GDGCHC | 2 cut(s) | 241, 739 |
| SinI | GGWCC | 1 cut(s) | 712 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 597 |
| SmlI | CTYRAG | 1 cut(s) | 98 |
| SmoI | CTYRAG | 1 cut(s) | 98 |
| Sse9I | AATT | 2 cut(s) | 70, 573 |
| SsiI | CCGC | 2 cut(s) | 227, 266 |
| SspMI | CTAG | 2 cut(s) | 183, 348 |
| StyD4I | CCNGG | 1 cut(s) | 723 |
| TaaI | ACNGT | 4 cut(s) | 469, 570, 661, 831 |
| TaqI | TCGA | 3 cut(s) | 117, 704, 833 |
| TaqII | GACCGA | 1 cut(s) | 71 |
| TasI | AATT | 2 cut(s) | 70, 573 |
| TauI | GCSGC | 1 cut(s) | 229 |
| TfiI | GAWTC | 1 cut(s) | 503 |
| Tru1I | TTAA | 2 cut(s) | 171, 261 |
| Tru9I | TTAA | 2 cut(s) | 171, 261 |
| TscAI | CASTG | 2 cut(s) | 474, 555 |
| TseFI | GTSAC | 1 cut(s) | 78 |
| TseI | GCWGC | 3 cut(s) | 91, 524, 788 |
| Tsp45I | GTSAC | 1 cut(s) | 78 |
| TspDTI | ATGAA | 2 cut(s) | 135, 687 |
| TspRI | CASTG | 2 cut(s) | 474, 555 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 247 |
| VpaK11BI | GGWCC | 1 cut(s) | 712 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 324 |
| XmiI | GTMKAC | 2 cut(s) | 464, 586 |
| XspI | CTAG | 2 cut(s) | 183, 348 |