ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1179 |
| Acc36I | ACCTGC | 1 cut(s) | 630 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1144, 1200 |
| AccI | GTMKAC | 1 cut(s) | 955 |
| AciI | CCGC | 3 cut(s) | 85, 281, 923 |
| AclWI | GGATC | 2 cut(s) | 731, 1016 |
| AcvI | CACGTG | 1 cut(s) | 928 |
| AdeI | CACNNNGTG | 1 cut(s) | 898 |
| AfaI | GTAC | 1 cut(s) | 690 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 191, 599, 950, 1096, 1144, 1200 |
| AgsI | TTSAA | 4 cut(s) | 67, 169, 634, 701 |
| AhlI | ACTAGT | 1 cut(s) | 995 |
| AjnI | CCWGG | 1 cut(s) | 917 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 194, 226 |
| AluBI | AGCT | 6 cut(s) | 441, 588, 940, 1049, 1085, 1115 |
| AluI | AGCT | 6 cut(s) | 441, 588, 940, 1049, 1085, 1115 |
| Alw26I | GTCTC | 1 cut(s) | 1157 |
| AlwI | GGATC | 2 cut(s) | 731, 1016 |
| Ama87I | CYCGRG | 1 cut(s) | 946 |
| AoxI | GGCC | 6 cut(s) | 42, 146, 786, 920, 1014, 1190 |
| ApaI | GGGCCC | 1 cut(s) | 790 |
| ApeKI | GCWGC | 4 cut(s) | 82, 848, 1049, 1175 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 194, 226 |
| AspLEI | GCGC | 3 cut(s) | 892, 1180, 1206 |
| AspS9I | GGNCC | 7 cut(s) | 202, 484, 671, 786, 787, 1014, 1191 |
| AsuC2I | CCSGG | 1 cut(s) | 1073 |
| AsuHPI | GGTGA | 3 cut(s) | 623, 1049, 1127 |
| AvaI | CYCGRG | 1 cut(s) | 946 |
| AvaII | GGWCC | 3 cut(s) | 202, 484, 671 |
| BaeGI | GKGCMC | 1 cut(s) | 790 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 517, 550 |
| BanII | GRGCYC | 1 cut(s) | 790 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 103, 135 |
| BbrPI | CACGTG | 1 cut(s) | 928 |
| BbvI | GCAGC | 4 cut(s) | 69, 835, 1036, 1162 |
| BccI | CCATC | 3 cut(s) | 48, 330, 1028 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1157, 1191 |
| BciT130I | CCWGG | 1 cut(s) | 919 |
| BciVI | GTATCC | 2 cut(s) | 314, 574 |
| BcnI | CCSGG | 1 cut(s) | 1073 |
| BcoDI | GTCTC | 1 cut(s) | 1157 |
| BcuI | ACTAGT | 1 cut(s) | 995 |
| BfaI | CTAG | 5 cut(s) | 585, 861, 903, 996, 1214 |
| BfmI | CTRYAG | 1 cut(s) | 849 |
| BfuAI | ACCTGC | 1 cut(s) | 630 |
| BfuI | GTATCC | 2 cut(s) | 314, 574 |
| BisI | GCNGC | 5 cut(s) | 83, 849, 923, 1050, 1176 |
| BlsI | GCNGC | 5 cut(s) | 84, 850, 924, 1051, 1177 |
| Bme1390I | CCNGG | 2 cut(s) | 919, 1073 |
| Bme18I | GGWCC | 3 cut(s) | 202, 484, 671 |
| BmeT110I | CYCGRG | 1 cut(s) | 946 |
| BmgT120I | GGNCC | 7 cut(s) | 202, 484, 671, 786, 787, 1014, 1191 |
| BmiI | GGNNCC | 1 cut(s) | 788 |
| BmrFI | CCNGG | 2 cut(s) | 919, 1073 |
| BmrI | ACTGGG | 1 cut(s) | 890 |
| BmsI | GCATC | 2 cut(s) | 434, 1215 |
| BmuI | ACTGGG | 1 cut(s) | 890 |
| BpmI | CTGGAG | 1 cut(s) | 218 |
| BpuMI | CCSGG | 1 cut(s) | 1073 |
| BsaAI | YACGTR | 2 cut(s) | 692, 928 |
| BsaBI | GATNNNNATC | 1 cut(s) | 879 |
| BsaI | GGTCTC | 1 cut(s) | 1157 |
| BsaJI | CCNNGG | 3 cut(s) | 947, 1071, 1138 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 191, 221, 647, 677 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 191, 599, 950, 1096, 1144, 1200 |
| Bse1I | ACTGG | 2 cut(s) | 470, 896 |
| Bse8I | GATNNNNATC | 1 cut(s) | 879 |
| BseBI | CCWGG | 1 cut(s) | 919 |
| BseDI | CCNNGG | 3 cut(s) | 947, 1071, 1138 |
| BseGI | GGATG | 1 cut(s) | 59 |
| BseJI | GATNNNNATC | 1 cut(s) | 879 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 191, 599, 950, 1096, 1144, 1200 |
| BseMII | CTCAG | 1 cut(s) | 409 |
| BseNI | ACTGG | 2 cut(s) | 470, 896 |
| BseRI | GAGGAG | 1 cut(s) | 668 |
| BseSI | GKGCMC | 1 cut(s) | 790 |
| BseXI | GCAGC | 4 cut(s) | 69, 835, 1036, 1162 |
| BseYI | CCCAGC | 1 cut(s) | 855 |
| BsgI | GTGCAG | 1 cut(s) | 446 |
| BshFI | GGCC | 6 cut(s) | 44, 148, 788, 922, 1016, 1192 |
| BsiHKCI | CYCGRG | 1 cut(s) | 946 |
| BsiSI | CCGG | 1 cut(s) | 1073 |
| BslFI | GGGAC | 1 cut(s) | 105 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 191, 599, 950, 1096, 1144, 1200 |
| BsmAI | GTCTC | 1 cut(s) | 1157 |
| BsmFI | GGGAC | 1 cut(s) | 105 |
| BsmI | GAATGC | 1 cut(s) | 35 |
| BsnI | GGCC | 6 cut(s) | 44, 148, 788, 922, 1016, 1192 |
| Bso31I | GGTCTC | 1 cut(s) | 1157 |
| BsoBI | CYCGRG | 1 cut(s) | 946 |
| Bsp120I | GGGCCC | 1 cut(s) | 786 |
| Bsp1286I | GDGCHC | 1 cut(s) | 790 |
| Bsp143I | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| BspACI | CCGC | 3 cut(s) | 85, 281, 923 |
| BspANI | GGCC | 6 cut(s) | 44, 148, 788, 922, 1016, 1192 |
| BspCNI | CTCAG | 1 cut(s) | 408 |
| BspHI | TCATGA | 1 cut(s) | 319 |
| BspLI | GGNNCC | 1 cut(s) | 788 |
| BspMAI | CTGCAG | 1 cut(s) | 853 |
| BspMI | ACCTGC | 1 cut(s) | 630 |
| BspPI | GGATC | 2 cut(s) | 731, 1016 |
| BspTNI | GGTCTC | 1 cut(s) | 1157 |
| BsrI | ACTGG | 2 cut(s) | 470, 896 |
| BssECI | CCNNGG | 3 cut(s) | 947, 1071, 1138 |
| BssMI | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| BssT1I | CCWWGG | 1 cut(s) | 1138 |
| Bst2UI | CCWGG | 1 cut(s) | 919 |
| Bst4CI | ACNGT | 3 cut(s) | 12, 488, 1172 |
| Bst6I | CTCTTC | 1 cut(s) | 750 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 79 |
| BstBAI | YACGTR | 2 cut(s) | 692, 928 |
| BstC8I | GCNNGC | 2 cut(s) | 732, 853 |
| BstDEI | CTNAG | 2 cut(s) | 311, 395 |
| BstEII | GGTNACC | 1 cut(s) | 383 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 189 |
| BstF5I | GGATG | 1 cut(s) | 59 |
| BstHHI | GCGC | 3 cut(s) | 892, 1180, 1206 |
| BstKTI | GATC | 5 cut(s) | 460, 726, 1011, 1082, 1120 |
| BstMAI | GTCTC | 1 cut(s) | 1157 |
| BstMBI | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 41, 79, 857, 1112, 1210 |
| BstNI | CCWGG | 1 cut(s) | 919 |
| BstNSI | RCATGY | 4 cut(s) | 629, 709, 734, 738 |
| BstPI | GGTNACC | 1 cut(s) | 383 |
| BstSCI | CCNGG | 2 cut(s) | 917, 1071 |
| BstSFI | CTRYAG | 1 cut(s) | 849 |
| BstSLI | GKGCMC | 1 cut(s) | 790 |
| BstSNI | TACGTA | 1 cut(s) | 692 |
| BstV1I | GCAGC | 4 cut(s) | 69, 835, 1036, 1162 |
| BstX2I | RGATCY | 1 cut(s) | 723 |
| BstYI | RGATCY | 1 cut(s) | 723 |
| BsuI | GTATCC | 2 cut(s) | 314, 574 |
| BsuRI | GGCC | 6 cut(s) | 44, 148, 788, 922, 1016, 1192 |
| BtsCI | GGATG | 1 cut(s) | 59 |
| BtsIMutI | CAGTG | 2 cut(s) | 463, 903 |
| BveI | ACCTGC | 1 cut(s) | 630 |
| Cac8I | GCNNGC | 2 cut(s) | 732, 853 |
| CciI | TCATGA | 1 cut(s) | 319 |
| CfoI | GCGC | 3 cut(s) | 892, 1180, 1206 |
| Cfr13I | GGNCC | 7 cut(s) | 202, 484, 671, 786, 787, 1014, 1191 |
| Csp6I | GTAC | 1 cut(s) | 689 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1169, 1204 |
| CviQI | GTAC | 1 cut(s) | 689 |
| DdeI | CTNAG | 2 cut(s) | 311, 395 |
| DpnI | GATC | 5 cut(s) | 459, 725, 1010, 1081, 1119 |
| DpnII | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| DraIII | CACNNNGTG | 1 cut(s) | 898 |
| Eam1104I | CTCTTC | 1 cut(s) | 750 |
| EarI | CTCTTC | 1 cut(s) | 750 |
| EciI | GGCGGA | 1 cut(s) | 296 |
| Eco105I | TACGTA | 1 cut(s) | 692 |
| Eco130I | CCWWGG | 1 cut(s) | 1138 |
| Eco24I | GRGCYC | 1 cut(s) | 790 |
| Eco31I | GGTCTC | 1 cut(s) | 1157 |
| Eco47I | GGWCC | 3 cut(s) | 202, 484, 671 |
| Eco72I | CACGTG | 1 cut(s) | 928 |
| Eco88I | CYCGRG | 1 cut(s) | 946 |
| Eco91I | GGTNACC | 1 cut(s) | 383 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 189 |
| EcoO109I | RGGNCCY | 2 cut(s) | 202, 787 |
| EcoO65I | GGTNACC | 1 cut(s) | 383 |
| EcoRII | CCWGG | 1 cut(s) | 917 |
| EcoT14I | CCWWGG | 1 cut(s) | 1138 |
| EcoT22I | ATGCAT | 2 cut(s) | 707, 736 |
| EcoT38I | GRGCYC | 1 cut(s) | 790 |
| ErhI | CCWWGG | 1 cut(s) | 1138 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 521, 553 |
| FaqI | GGGAC | 1 cut(s) | 105 |
| FblI | GTMKAC | 1 cut(s) | 955 |
| Fnu4HI | GCNGC | 5 cut(s) | 83, 849, 923, 1050, 1176 |
| FokI | GGATG | 1 cut(s) | 66 |
| FriOI | GRGCYC | 1 cut(s) | 790 |
| Fsp4HI | GCNGC | 5 cut(s) | 83, 849, 923, 1050, 1176 |
| FspBI | CTAG | 5 cut(s) | 585, 861, 903, 996, 1214 |
| FspI | TGCGCA | 1 cut(s) | 1179 |
| GlaI | GCGC | 3 cut(s) | 891, 1179, 1205 |
| GluI | GCNGC | 5 cut(s) | 83, 849, 923, 1050, 1176 |
| GsaI | CCCAGC | 1 cut(s) | 859 |
| GsuI | CTGGAG | 1 cut(s) | 218 |
| HaeIII | GGCC | 6 cut(s) | 44, 148, 788, 922, 1016, 1192 |
| HapII | CCGG | 1 cut(s) | 1073 |
| HhaI | GCGC | 3 cut(s) | 892, 1180, 1206 |
| Hin6I | GCGC | 3 cut(s) | 890, 1178, 1204 |
| HinP1I | GCGC | 3 cut(s) | 890, 1178, 1204 |
| HincII | GTYRAC | 1 cut(s) | 217 |
| HindII | GTYRAC | 1 cut(s) | 217 |
| HinfI | GANTC | 2 cut(s) | 399, 740 |
| HpaII | CCGG | 1 cut(s) | 1073 |
| HphI | GGTGA | 3 cut(s) | 623, 1049, 1127 |
| Hpy166II | GTNNAC | 3 cut(s) | 217, 674, 956 |
| Hpy188I | TCNGA | 2 cut(s) | 377, 398 |
| Hpy188III | TCNNGA | 4 cut(s) | 320, 435, 872, 903 |
| Hpy8I | GTNNAC | 3 cut(s) | 217, 674, 956 |
| HpyAV | CCTTC | 9 cut(s) | 82, 184, 185, 232, 271, 352, 442, 475, 814 |
| HpyCH4III | ACNGT | 3 cut(s) | 12, 488, 1172 |
| HpyCH4IV | ACGT | 2 cut(s) | 691, 927 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 41, 79, 857, 1112, 1210 |
| HpyF3I | CTNAG | 2 cut(s) | 311, 395 |
| HpySE526I | ACGT | 2 cut(s) | 691, 927 |
| HspAI | GCGC | 3 cut(s) | 890, 1178, 1204 |
| Kzo9I | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| LmnI | GCTCC | 3 cut(s) | 446, 937, 989 |
| Lsp1109I | GCAGC | 4 cut(s) | 69, 835, 1036, 1162 |
| LweI | GCATC | 2 cut(s) | 434, 1215 |
| MaeI | CTAG | 5 cut(s) | 585, 861, 903, 996, 1214 |
| MaeII | ACGT | 2 cut(s) | 691, 927 |
| MaeIII | GTNAC | 2 cut(s) | 383, 692 |
| MalI | GATC | 5 cut(s) | 459, 725, 1010, 1081, 1119 |
| MboI | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| MboII | GAAGA | 4 cut(s) | 626, 737, 1043, 1112 |
| MfeI | CAATTG | 1 cut(s) | 1053 |
| MflI | RGATCY | 1 cut(s) | 723 |
| MhlI | GDGCHC | 1 cut(s) | 790 |
| MluCI | AATT | 2 cut(s) | 826, 1053 |
| MlyI | GAGTC | 1 cut(s) | 393 |
| Mph1103I | ATGCAT | 2 cut(s) | 707, 736 |
| MseI | TTAA | 2 cut(s) | 843, 960 |
| MslI | CAYNNNNRTG | 1 cut(s) | 735 |
| MspI | CCGG | 1 cut(s) | 1073 |
| MspR9I | CCNGG | 2 cut(s) | 919, 1073 |
| MunI | CAATTG | 1 cut(s) | 1053 |
| Mva1269I | GAATGC | 1 cut(s) | 35 |
| MvaI | CCWGG | 1 cut(s) | 919 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 41, 79, 857, 1112, 1210 |
| NciI | CCSGG | 1 cut(s) | 1073 |
| NdeII | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| NlaIV | GGNNCC | 1 cut(s) | 788 |
| NsbI | TGCGCA | 1 cut(s) | 1179 |
| NsiI | ATGCAT | 2 cut(s) | 707, 736 |
| NspI | RCATGY | 4 cut(s) | 629, 709, 734, 738 |
| PaeI | GCATGC | 1 cut(s) | 734 |
| PagI | TCATGA | 1 cut(s) | 319 |
| PctI | GAATGC | 1 cut(s) | 35 |
| PfeI | GAWTC | 1 cut(s) | 740 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1144, 1200 |
| PkrI | GCNGC | 5 cut(s) | 84, 850, 924, 1051, 1177 |
| PleI | GAGTC | 1 cut(s) | 393 |
| PmaCI | CACGTG | 1 cut(s) | 928 |
| PmlI | CACGTG | 1 cut(s) | 928 |
| PpsI | GAGTC | 1 cut(s) | 393 |
| Ppu21I | YACGTR | 2 cut(s) | 692, 928 |
| PpuMI | RGGWCCY | 1 cut(s) | 202 |
| Psp5II | RGGWCCY | 1 cut(s) | 202 |
| Psp6I | CCWGG | 1 cut(s) | 917 |
| PspCI | CACGTG | 1 cut(s) | 928 |
| PspEI | GGTNACC | 1 cut(s) | 383 |
| PspFI | CCCAGC | 1 cut(s) | 855 |
| PspGI | CCWGG | 1 cut(s) | 917 |
| PspN4I | GGNNCC | 1 cut(s) | 788 |
| PspOMI | GGGCCC | 1 cut(s) | 786 |
| PspPI | GGNCC | 7 cut(s) | 202, 484, 671, 786, 787, 1014, 1191 |
| PspPPI | RGGWCCY | 1 cut(s) | 202 |
| PstI | CTGCAG | 1 cut(s) | 853 |
| PsuI | RGATCY | 1 cut(s) | 723 |
| RsaI | GTAC | 1 cut(s) | 690 |
| RsaNI | GTAC | 1 cut(s) | 689 |
| RseI | CAYNNNNRTG | 1 cut(s) | 735 |
| SaqAI | TTAA | 2 cut(s) | 843, 960 |
| SatI | GCNGC | 5 cut(s) | 83, 849, 923, 1050, 1176 |
| Sau3AI | GATC | 5 cut(s) | 457, 723, 1008, 1079, 1117 |
| Sau96I | GGNCC | 7 cut(s) | 202, 484, 671, 786, 787, 1014, 1191 |
| SchI | GAGTC | 1 cut(s) | 393 |
| ScrFI | CCNGG | 2 cut(s) | 919, 1073 |
| SduI | GDGCHC | 1 cut(s) | 790 |
| SfaNI | GCATC | 2 cut(s) | 434, 1215 |
| SfcI | CTRYAG | 1 cut(s) | 849 |
| SinI | GGWCC | 3 cut(s) | 202, 484, 671 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 735 |
| SnaBI | TACGTA | 1 cut(s) | 692 |
| SpeI | ACTAGT | 1 cut(s) | 995 |
| SphI | GCATGC | 1 cut(s) | 734 |
| Sse9I | AATT | 2 cut(s) | 826, 1053 |
| SsiI | CCGC | 3 cut(s) | 85, 281, 923 |
| SspMI | CTAG | 5 cut(s) | 585, 861, 903, 996, 1214 |
| StyD4I | CCNGG | 2 cut(s) | 917, 1071 |
| StyI | CCWWGG | 1 cut(s) | 1138 |
| TaaI | ACNGT | 3 cut(s) | 12, 488, 1172 |
| TaiI | ACGT | 2 cut(s) | 694, 930 |
| TaqI | TCGA | 3 cut(s) | 39, 97, 547 |
| TaqII | GACCGA | 1 cut(s) | 1181 |
| TasI | AATT | 2 cut(s) | 826, 1053 |
| TauI | GCSGC | 1 cut(s) | 925 |
| TfiI | GAWTC | 1 cut(s) | 740 |
| Tru1I | TTAA | 2 cut(s) | 843, 960 |
| Tru9I | TTAA | 2 cut(s) | 843, 960 |
| TscAI | CASTG | 2 cut(s) | 470, 903 |
| TseI | GCWGC | 4 cut(s) | 82, 848, 1049, 1175 |
| TspDTI | ATGAA | 5 cut(s) | 308, 336, 813, 974, 1044 |
| TspGWI | ACGGA | 2 cut(s) | 433, 593 |
| TspRI | CASTG | 2 cut(s) | 470, 903 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1144, 1200 |
| VpaK11BI | GGWCC | 3 cut(s) | 202, 484, 671 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 189 |
| XbaI | TCTAGA | 1 cut(s) | 902 |
| XceI | RCATGY | 4 cut(s) | 629, 709, 734, 738 |
| XmiI | GTMKAC | 1 cut(s) | 955 |
| XspI | CTAG | 5 cut(s) | 585, 861, 903, 996, 1214 |
| Zsp2I | ATGCAT | 2 cut(s) | 707, 736 |