Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| EF-hand_7 | PF13499 | 4 - 66 | 4.3e-14 | EF-hand domain pair |
| EF-hand_1 | PF00036 | 5 - 30 | 3.4e-07 | EF hand domain |
| EF-hand_6 | PF13405 | 5 - 34 | 6.5e-08 | EF-hand domain |
| EF-hand_5 | PF13202 | 6 - 27 | 2.7e-07 | EF hand |
| EF_EFCAB10_C | PF24548 | 6 - 50 | 6.1e-06 | EFCAB10, C-terminal EF-hand |
| EF-hand_1 | PF00036 | 41 - 67 | 4.5e-06 | EF hand domain |
| EF-hand_7 | PF13499 | 78 - 144 | 6.4e-18 | EF-hand domain pair |
| EF-hand_6 | PF13405 | 80 - 109 | 1.1e-09 | EF-hand domain |
| EF-hand_1 | PF00036 | 81 - 108 | 1.5e-08 | EF hand domain |
| EF-hand_5 | PF13202 | 82 - 105 | 9.7e-08 | EF hand |
| EF-hand_8 | PF13833 | 96 - 144 | 5.6e-10 | EF-hand domain pair |
| EF-hand_1 | PF00036 | 119 - 144 | 2.9e-08 | EF hand domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 171 |
| AciI | CCGC | 1 cut(s) | 58 |
| AcoI | YGGCCR | 1 cut(s) | 55 |
| AcsI | RAATTY | 1 cut(s) | 403 |
| AcyI | GRCGYC | 1 cut(s) | 150 |
| AfaI | GTAC | 1 cut(s) | 197 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 118, 235 |
| AgsI | TTSAA | 3 cut(s) | 256, 409, 459 |
| AluBI | AGCT | 2 cut(s) | 16, 76 |
| AluI | AGCT | 2 cut(s) | 16, 76 |
| Alw21I | GWGCWC | 1 cut(s) | 18 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 76, 205 |
| AoxI | GGCC | 1 cut(s) | 55 |
| ApeKI | GCWGC | 1 cut(s) | 446 |
| ApoI | RAATTY | 1 cut(s) | 403 |
| AspS9I | GGNCC | 1 cut(s) | 226 |
| AsuC2I | CCSGG | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 2 cut(s) | 55, 412 |
| AvaII | GGWCC | 1 cut(s) | 226 |
| BanII | GRGCYC | 2 cut(s) | 18, 330 |
| Bbv12I | GWGCWC | 1 cut(s) | 18 |
| BbvI | GCAGC | 1 cut(s) | 433 |
| BccI | CCATC | 5 cut(s) | 155, 202, 272, 380, 386 |
| BceAI | ACGGC | 3 cut(s) | 64, 70, 289 |
| BclI | TGATCA | 1 cut(s) | 265 |
| BcnI | CCSGG | 1 cut(s) | 230 |
| BfaI | CTAG | 1 cut(s) | 89 |
| BisI | GCNGC | 2 cut(s) | 58, 447 |
| BlsI | GCNGC | 2 cut(s) | 59, 448 |
| Bme1390I | CCNGG | 1 cut(s) | 230 |
| Bme18I | GGWCC | 1 cut(s) | 226 |
| BmgT120I | GGNCC | 1 cut(s) | 226 |
| BmiI | GGNNCC | 1 cut(s) | 228 |
| BmrFI | CCNGG | 1 cut(s) | 230 |
| BmsI | GCATC | 2 cut(s) | 69, 111 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 32 |
| BpuEI | CTTGAG | 1 cut(s) | 314 |
| BpuMI | CCSGG | 1 cut(s) | 230 |
| BsaHI | GRCGYC | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 1 cut(s) | 321 |
| BsaWI | WCCGGW | 1 cut(s) | 42 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 118, 235 |
| BseDI | CCNNGG | 1 cut(s) | 321 |
| BseGI | GGATG | 3 cut(s) | 108, 385, 391 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 118, 235 |
| BseMII | CTCAG | 1 cut(s) | 68 |
| BseRI | GAGGAG | 1 cut(s) | 248 |
| BseX3I | CGGCCG | 1 cut(s) | 55 |
| BseXI | GCAGC | 1 cut(s) | 433 |
| Bsh1285I | CGRYCG | 2 cut(s) | 43, 58 |
| BshFI | GGCC | 1 cut(s) | 57 |
| BsiEI | CGRYCG | 2 cut(s) | 43, 58 |
| BsiHKAI | GWGCWC | 1 cut(s) | 18 |
| BsiSI | CCGG | 2 cut(s) | 43, 230 |
| BslFI | GGGAC | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 118, 235 |
| BsmFI | GGGAC | 1 cut(s) | 233 |
| BsnI | GGCC | 1 cut(s) | 57 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 330 |
| Bsp143I | GATC | 2 cut(s) | 144, 265 |
| BspACI | CCGC | 1 cut(s) | 58 |
| BspANI | GGCC | 1 cut(s) | 57 |
| BspCNI | CTCAG | 1 cut(s) | 69 |
| BspLI | GGNNCC | 1 cut(s) | 228 |
| BssECI | CCNNGG | 1 cut(s) | 321 |
| BssMI | GATC | 2 cut(s) | 144, 265 |
| BssNI | GRCGYC | 1 cut(s) | 150 |
| BssT1I | CCWWGG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| BstACI | GRCGYC | 1 cut(s) | 150 |
| BstDEI | CTNAG | 1 cut(s) | 77 |
| BstF5I | GGATG | 3 cut(s) | 108, 385, 391 |
| BstKTI | GATC | 2 cut(s) | 147, 268 |
| BstMBI | GATC | 2 cut(s) | 144, 265 |
| BstMCI | CGRYCG | 2 cut(s) | 43, 58 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 57 |
| BstSCI | CCNGG | 1 cut(s) | 228 |
| BstV1I | GCAGC | 1 cut(s) | 433 |
| BstZI | CGGCCG | 1 cut(s) | 55 |
| BsuRI | GGCC | 1 cut(s) | 57 |
| BtgZI | GCGATG | 1 cut(s) | 291 |
| BtsCI | GGATG | 3 cut(s) | 108, 385, 391 |
| CaiI | CAGNNNCTG | 2 cut(s) | 76, 205 |
| Cfr13I | GGNCC | 1 cut(s) | 226 |
| CseI | GACGC | 1 cut(s) | 158 |
| Csp6I | GTAC | 1 cut(s) | 196 |
| CviAII | CATG | 1 cut(s) | 241 |
| CviJI | RGCY | 6 cut(s) | 16, 57, 76, 317, 328, 441 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 57, 76, 317, 328, 441 |
| CviQI | GTAC | 1 cut(s) | 196 |
| DdeI | CTNAG | 1 cut(s) | 77 |
| DpnI | GATC | 2 cut(s) | 146, 267 |
| DpnII | GATC | 2 cut(s) | 144, 265 |
| EaeI | YGGCCR | 1 cut(s) | 55 |
| EagI | CGGCCG | 1 cut(s) | 55 |
| Ecl136II | GAGCTC | 1 cut(s) | 16 |
| EclXI | CGGCCG | 1 cut(s) | 55 |
| Eco130I | CCWWGG | 1 cut(s) | 321 |
| Eco24I | GRGCYC | 2 cut(s) | 18, 330 |
| Eco47I | GGWCC | 1 cut(s) | 226 |
| Eco52I | CGGCCG | 1 cut(s) | 55 |
| Eco53kI | GAGCTC | 1 cut(s) | 16 |
| EcoICRI | GAGCTC | 1 cut(s) | 16 |
| EcoO109I | RGGNCCY | 1 cut(s) | 226 |
| EcoT14I | CCWWGG | 1 cut(s) | 321 |
| EcoT38I | GRGCYC | 2 cut(s) | 18, 330 |
| ErhI | CCWWGG | 1 cut(s) | 321 |
| FaeI | CATG | 1 cut(s) | 244 |
| FaiI | YATR | 2 cut(s) | 242, 365 |
| FaqI | GGGAC | 1 cut(s) | 233 |
| FatI | CATG | 1 cut(s) | 240 |
| FbaI | TGATCA | 1 cut(s) | 265 |
| FblI | GTMKAC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 2 cut(s) | 58, 447 |
| FokI | GGATG | 3 cut(s) | 95, 392, 398 |
| FriOI | GRGCYC | 2 cut(s) | 18, 330 |
| Fsp4HI | GCNGC | 2 cut(s) | 58, 447 |
| FspBI | CTAG | 1 cut(s) | 89 |
| GluI | GCNGC | 2 cut(s) | 58, 447 |
| HaeIII | GGCC | 1 cut(s) | 57 |
| HapII | CCGG | 2 cut(s) | 43, 230 |
| HgaI | GACGC | 1 cut(s) | 158 |
| Hin1I | GRCGYC | 1 cut(s) | 150 |
| Hin1II | CATG | 1 cut(s) | 244 |
| HincII | GTYRAC | 1 cut(s) | 295 |
| HindII | GTYRAC | 1 cut(s) | 295 |
| HinfI | GANTC | 2 cut(s) | 79, 94 |
| HpaII | CCGG | 2 cut(s) | 43, 230 |
| HphI | GGTGA | 2 cut(s) | 55, 412 |
| Hpy166II | GTNNAC | 2 cut(s) | 172, 295 |
| Hpy188I | TCNGA | 1 cut(s) | 270 |
| Hpy188III | TCNNGA | 1 cut(s) | 31 |
| Hpy8I | GTNNAC | 2 cut(s) | 172, 295 |
| Hpy99I | CGWCG | 3 cut(s) | 56, 152, 182 |
| HpyAV | CCTTC | 2 cut(s) | 367, 424 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4IV | ACGT | 1 cut(s) | 344 |
| HpyCH4V | TGCA | 2 cut(s) | 127, 357 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 57 |
| HpyF3I | CTNAG | 1 cut(s) | 77 |
| HpySE526I | ACGT | 1 cut(s) | 344 |
| Hsp92I | GRCGYC | 1 cut(s) | 150 |
| Hsp92II | CATG | 1 cut(s) | 244 |
| Ksp22I | TGATCA | 1 cut(s) | 265 |
| Kzo9I | GATC | 2 cut(s) | 144, 265 |
| LmnI | GCTCC | 2 cut(s) | 21, 73 |
| LpnPI | CCDG | 7 cut(s) | 44, 56, 56, 143, 212, 218, 243 |
| Lsp1109I | GCAGC | 1 cut(s) | 433 |
| LweI | GCATC | 2 cut(s) | 69, 111 |
| MaeI | CTAG | 1 cut(s) | 89 |
| MaeII | ACGT | 1 cut(s) | 344 |
| MaeIII | GTNAC | 1 cut(s) | 80 |
| MalI | GATC | 2 cut(s) | 146, 267 |
| MboI | GATC | 2 cut(s) | 144, 265 |
| MboII | GAAGA | 1 cut(s) | 97 |
| MhlI | GDGCHC | 2 cut(s) | 18, 330 |
| MluCI | AATT | 2 cut(s) | 403, 460 |
| MlyI | GAGTC | 1 cut(s) | 88 |
| MmeI | TCCRAC | 2 cut(s) | 43, 327 |
| MnlI | CCTC | 9 cut(s) | 210, 217, 226, 229, 237, 297, 333, 343, 390 |
| MseI | TTAA | 2 cut(s) | 417, 463 |
| MspI | CCGG | 2 cut(s) | 43, 230 |
| MspR9I | CCNGG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 57 |
| NciI | CCSGG | 1 cut(s) | 230 |
| NdeII | GATC | 2 cut(s) | 144, 265 |
| NlaIII | CATG | 1 cut(s) | 244 |
| NlaIV | GGNNCC | 1 cut(s) | 228 |
| NmeAIII | GCCGAG | 1 cut(s) | 78 |
| NmuCI | GTSAC | 1 cut(s) | 80 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 219 |
| PfeI | GAWTC | 1 cut(s) | 94 |
| PkrI | GCNGC | 2 cut(s) | 59, 448 |
| PleI | GAGTC | 1 cut(s) | 87 |
| PpsI | GAGTC | 1 cut(s) | 87 |
| PpuMI | RGGWCCY | 1 cut(s) | 226 |
| Psp124BI | GAGCTC | 1 cut(s) | 18 |
| Psp5II | RGGWCCY | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 1 cut(s) | 228 |
| PspPI | GGNCC | 1 cut(s) | 226 |
| PspPPI | RGGWCCY | 1 cut(s) | 226 |
| PstNI | CAGNNNCTG | 2 cut(s) | 76, 205 |
| RsaI | GTAC | 1 cut(s) | 197 |
| RsaNI | GTAC | 1 cut(s) | 196 |
| SacI | GAGCTC | 1 cut(s) | 18 |
| SaqAI | TTAA | 2 cut(s) | 417, 463 |
| SatI | GCNGC | 2 cut(s) | 58, 447 |
| Sau3AI | GATC | 2 cut(s) | 144, 265 |
| Sau96I | GGNCC | 1 cut(s) | 226 |
| SchI | GAGTC | 1 cut(s) | 88 |
| ScrFI | CCNGG | 1 cut(s) | 230 |
| SduI | GDGCHC | 2 cut(s) | 18, 330 |
| SetI | ASST | 6 cut(s) | 18, 78, 207, 308, 347, 378 |
| SfaNI | GCATC | 2 cut(s) | 69, 111 |
| SinI | GGWCC | 1 cut(s) | 226 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| Sse9I | AATT | 2 cut(s) | 403, 460 |
| SsiI | CCGC | 1 cut(s) | 58 |
| SspMI | CTAG | 1 cut(s) | 89 |
| SstI | GAGCTC | 1 cut(s) | 18 |
| StyD4I | CCNGG | 1 cut(s) | 228 |
| StyI | CCWWGG | 1 cut(s) | 321 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TaiI | ACGT | 1 cut(s) | 347 |
| TaqI | TCGA | 3 cut(s) | 39, 147, 177 |
| TasI | AATT | 2 cut(s) | 403, 460 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 1 cut(s) | 94 |
| Tru1I | TTAA | 2 cut(s) | 417, 463 |
| Tru9I | TTAA | 2 cut(s) | 417, 463 |
| TseFI | GTSAC | 1 cut(s) | 80 |
| TseI | GCWGC | 1 cut(s) | 446 |
| Tsp45I | GTSAC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 3 cut(s) | 97, 274, 443 |
| VpaK11BI | GGWCC | 1 cut(s) | 226 |
| XapI | RAATTY | 1 cut(s) | 403 |
| XmiI | GTMKAC | 1 cut(s) | 171 |
| XspI | CTAG | 1 cut(s) | 89 |