Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 482 |
| AccB1I | GGYRCC | 1 cut(s) | 676 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 687 |
| AccBSI | CCGCTC | 1 cut(s) | 743 |
| AccI | GTMKAC | 1 cut(s) | 67 |
| AciI | CCGC | 3 cut(s) | 50, 629, 743 |
| AclWI | GGATC | 2 cut(s) | 190, 739 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcyI | GRCGYC | 1 cut(s) | 479 |
| AfaI | GTAC | 2 cut(s) | 312, 376 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 687, 704 |
| AflII | CTTAAG | 2 cut(s) | 61, 278 |
| AgsI | TTSAA | 3 cut(s) | 14, 651, 715 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 499 |
| AluBI | AGCT | 1 cut(s) | 7 |
| AluI | AGCT | 1 cut(s) | 7 |
| Alw21I | GWGCWC | 2 cut(s) | 9, 453 |
| AlwI | GGATC | 2 cut(s) | 190, 739 |
| AoxI | GGCC | 1 cut(s) | 425 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| AspLEI | GCGC | 1 cut(s) | 157 |
| AspS9I | GGNCC | 1 cut(s) | 425 |
| AsuHPI | GGTGA | 2 cut(s) | 175, 614 |
| AsuII | TTCGAA | 1 cut(s) | 552 |
| BaeGI | GKGCMC | 2 cut(s) | 679, 698 |
| BanI | GGYRCC | 1 cut(s) | 676 |
| BanII | GRGCYC | 1 cut(s) | 9 |
| Bbv12I | GWGCWC | 2 cut(s) | 9, 453 |
| BccI | CCATC | 2 cut(s) | 181, 722 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 86, 120, 165, 199 |
| BfaI | CTAG | 3 cut(s) | 308, 491, 702 |
| BfrI | CTTAAG | 2 cut(s) | 61, 278 |
| BisI | GCNGC | 1 cut(s) | 51 |
| BlsI | GCNGC | 1 cut(s) | 52 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 499 |
| BmgT120I | GGNCC | 1 cut(s) | 425 |
| BmiI | GGNNCC | 1 cut(s) | 678 |
| BmsI | GCATC | 2 cut(s) | 185, 571 |
| Bpu14I | TTCGAA | 1 cut(s) | 552 |
| Bsa29I | ATCGAT | 1 cut(s) | 185 |
| BsaHI | GRCGYC | 1 cut(s) | 479 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 687, 704 |
| Bse1I | ACTGG | 1 cut(s) | 221 |
| BseCI | ATCGAT | 1 cut(s) | 185 |
| BseGI | GGATG | 2 cut(s) | 733, 751 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 687, 704 |
| BseNI | ACTGG | 1 cut(s) | 221 |
| BseSI | GKGCMC | 2 cut(s) | 679, 698 |
| BseYI | CCCAGC | 2 cut(s) | 397, 454 |
| Bsh1285I | CGRYCG | 1 cut(s) | 106 |
| BshFI | GGCC | 1 cut(s) | 427 |
| BshNI | GGYRCC | 1 cut(s) | 676 |
| BshVI | ATCGAT | 1 cut(s) | 185 |
| BsiEI | CGRYCG | 1 cut(s) | 106 |
| BsiHKAI | GWGCWC | 2 cut(s) | 9, 453 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 687, 704 |
| BsnI | GGCC | 1 cut(s) | 427 |
| Bsp119I | TTCGAA | 1 cut(s) | 552 |
| Bsp1286I | GDGCHC | 4 cut(s) | 9, 453, 679, 698 |
| Bsp143I | GATC | 4 cut(s) | 82, 103, 182, 731 |
| BspACI | CCGC | 3 cut(s) | 50, 629, 743 |
| BspANI | GGCC | 1 cut(s) | 427 |
| BspDI | ATCGAT | 1 cut(s) | 185 |
| BspLI | GGNNCC | 1 cut(s) | 678 |
| BspPI | GGATC | 2 cut(s) | 190, 739 |
| BspT104I | TTCGAA | 1 cut(s) | 552 |
| BspT107I | GGYRCC | 1 cut(s) | 676 |
| BspTI | CTTAAG | 2 cut(s) | 61, 278 |
| BsrBI | CCGCTC | 1 cut(s) | 743 |
| BsrI | ACTGG | 1 cut(s) | 221 |
| BssMI | GATC | 4 cut(s) | 82, 103, 182, 731 |
| BssNI | GRCGYC | 1 cut(s) | 479 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 594 |
| Bst6I | CTCTTC | 1 cut(s) | 475 |
| BstACI | GRCGYC | 1 cut(s) | 479 |
| BstAFI | CTTAAG | 2 cut(s) | 61, 278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 351 |
| BstBI | TTCGAA | 1 cut(s) | 552 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 702 |
| BstF5I | GGATG | 2 cut(s) | 733, 751 |
| BstHHI | GCGC | 1 cut(s) | 157 |
| BstKTI | GATC | 4 cut(s) | 85, 106, 185, 734 |
| BstMBI | GATC | 4 cut(s) | 82, 103, 182, 731 |
| BstMCI | CGRYCG | 1 cut(s) | 106 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 217, 351 |
| BstNSI | RCATGY | 3 cut(s) | 349, 358, 366 |
| BstSLI | GKGCMC | 2 cut(s) | 679, 698 |
| Bsu15I | ATCGAT | 1 cut(s) | 185 |
| BsuRI | GGCC | 1 cut(s) | 427 |
| BsuTUI | ATCGAT | 1 cut(s) | 185 |
| BtsCI | GGATG | 2 cut(s) | 733, 751 |
| CfoI | GCGC | 1 cut(s) | 157 |
| Cfr13I | GGNCC | 1 cut(s) | 425 |
| ClaI | ATCGAT | 1 cut(s) | 185 |
| CseI | GACGC | 1 cut(s) | 608 |
| Csp6I | GTAC | 2 cut(s) | 311, 375 |
| CviAII | CATG | 8 cut(s) | 265, 346, 355, 363, 474, 529, 626, 682 |
| CviJI | RGCY | 6 cut(s) | 7, 53, 427, 458, 535, 542 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 53, 427, 458, 535, 542 |
| CviQI | GTAC | 2 cut(s) | 311, 375 |
| DpnI | GATC | 4 cut(s) | 84, 105, 184, 733 |
| DpnII | GATC | 4 cut(s) | 82, 103, 182, 731 |
| DraI | TTTAAA | 2 cut(s) | 388, 438 |
| DriI | GACNNNNNGTC | 1 cut(s) | 499 |
| Eam1104I | CTCTTC | 1 cut(s) | 475 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 499 |
| EarI | CTCTTC | 1 cut(s) | 475 |
| Ecl136II | GAGCTC | 1 cut(s) | 7 |
| Eco24I | GRGCYC | 1 cut(s) | 9 |
| Eco53kI | GAGCTC | 1 cut(s) | 7 |
| EcoICRI | GAGCTC | 1 cut(s) | 7 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 702 |
| EcoRI | GAATTC | 1 cut(s) | 73 |
| EcoT38I | GRGCYC | 1 cut(s) | 9 |
| FaeI | CATG | 8 cut(s) | 268, 349, 358, 366, 477, 532, 629, 685 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 272, 304 |
| FatI | CATG | 8 cut(s) | 264, 345, 354, 362, 473, 528, 625, 681 |
| FauNDI | CATATG | 1 cut(s) | 222 |
| FblI | GTMKAC | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 1 cut(s) | 51 |
| FokI | GGATG | 1 cut(s) | 740 |
| FriOI | GRGCYC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 1 cut(s) | 51 |
| FspBI | CTAG | 3 cut(s) | 308, 491, 702 |
| GlaI | GCGC | 1 cut(s) | 156 |
| GluI | GCNGC | 1 cut(s) | 51 |
| GsaI | CCCAGC | 2 cut(s) | 401, 458 |
| HaeIII | GGCC | 1 cut(s) | 427 |
| HgaI | GACGC | 1 cut(s) | 608 |
| HhaI | GCGC | 1 cut(s) | 157 |
| Hin1I | GRCGYC | 1 cut(s) | 479 |
| Hin1II | CATG | 8 cut(s) | 268, 349, 358, 366, 477, 532, 629, 685 |
| Hin6I | GCGC | 1 cut(s) | 155 |
| HinP1I | GCGC | 1 cut(s) | 155 |
| HincII | GTYRAC | 1 cut(s) | 508 |
| HindII | GTYRAC | 1 cut(s) | 508 |
| HinfI | GANTC | 3 cut(s) | 285, 368, 463 |
| HphI | GGTGA | 2 cut(s) | 175, 614 |
| Hpy166II | GTNNAC | 3 cut(s) | 68, 377, 508 |
| Hpy188I | TCNGA | 2 cut(s) | 108, 484 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 180, 637 |
| Hpy8I | GTNNAC | 3 cut(s) | 68, 377, 508 |
| Hpy99I | CGWCG | 1 cut(s) | 484 |
| HpyAV | CCTTC | 1 cut(s) | 595 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 594 |
| HpyCH4IV | ACGT | 1 cut(s) | 479 |
| HpyCH4V | TGCA | 6 cut(s) | 176, 303, 345, 354, 362, 433 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 217, 351 |
| HpySE526I | ACGT | 1 cut(s) | 479 |
| Hsp92I | GRCGYC | 1 cut(s) | 479 |
| Hsp92II | CATG | 8 cut(s) | 268, 349, 358, 366, 477, 532, 629, 685 |
| HspAI | GCGC | 1 cut(s) | 155 |
| Kzo9I | GATC | 4 cut(s) | 82, 103, 182, 731 |
| LmnI | GCTCC | 2 cut(s) | 4, 12 |
| LpnPI | CCDG | 8 cut(s) | 12, 165, 202, 345, 357, 411, 468, 650 |
| LweI | GCATC | 2 cut(s) | 185, 571 |
| MaeI | CTAG | 3 cut(s) | 308, 491, 702 |
| MaeII | ACGT | 1 cut(s) | 479 |
| MaeIII | GTNAC | 3 cut(s) | 134, 212, 620 |
| MalI | GATC | 4 cut(s) | 84, 105, 184, 733 |
| MbiI | CCGCTC | 1 cut(s) | 743 |
| MboI | GATC | 4 cut(s) | 82, 103, 182, 731 |
| MboII | GAAGA | 5 cut(s) | 26, 462, 517, 586, 727 |
| MhlI | GDGCHC | 4 cut(s) | 9, 453, 679, 698 |
| MluCI | AATT | 2 cut(s) | 73, 517 |
| MlyI | GAGTC | 1 cut(s) | 457 |
| MmeI | TCCRAC | 2 cut(s) | 462, 613 |
| MnlI | CCTC | 5 cut(s) | 187, 201, 654, 698, 708 |
| MseI | TTAA | 6 cut(s) | 62, 126, 255, 279, 387, 437 |
| MspCI | CTTAAG | 2 cut(s) | 61, 278 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 217, 351 |
| NdeI | CATATG | 1 cut(s) | 222 |
| NdeII | GATC | 4 cut(s) | 82, 103, 182, 731 |
| NlaIII | CATG | 8 cut(s) | 268, 349, 358, 366, 477, 532, 629, 685 |
| NlaIV | GGNNCC | 1 cut(s) | 678 |
| NmuCI | GTSAC | 1 cut(s) | 620 |
| NspI | RCATGY | 3 cut(s) | 349, 358, 366 |
| NspV | TTCGAA | 1 cut(s) | 552 |
| PfeI | GAWTC | 2 cut(s) | 285, 368 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 687 |
| PkrI | GCNGC | 1 cut(s) | 52 |
| Ple19I | CGATCG | 1 cut(s) | 106 |
| PleI | GAGTC | 1 cut(s) | 457 |
| PpsI | GAGTC | 1 cut(s) | 457 |
| Psp124BI | GAGCTC | 1 cut(s) | 9 |
| PspFI | CCCAGC | 2 cut(s) | 397, 454 |
| PspN4I | GGNNCC | 1 cut(s) | 678 |
| PspPI | GGNCC | 1 cut(s) | 425 |
| PvuI | CGATCG | 1 cut(s) | 106 |
| RsaI | GTAC | 2 cut(s) | 312, 376 |
| RsaNI | GTAC | 2 cut(s) | 311, 375 |
| SacI | GAGCTC | 1 cut(s) | 9 |
| SaqAI | TTAA | 6 cut(s) | 62, 126, 255, 279, 387, 437 |
| SatI | GCNGC | 1 cut(s) | 51 |
| Sau3AI | GATC | 4 cut(s) | 82, 103, 182, 731 |
| Sau96I | GGNCC | 1 cut(s) | 425 |
| SchI | GAGTC | 1 cut(s) | 457 |
| SduI | GDGCHC | 4 cut(s) | 9, 453, 679, 698 |
| SetI | ASST | 6 cut(s) | 9, 31, 324, 376, 482, 657 |
| SfaNI | GCATC | 2 cut(s) | 185, 571 |
| SfuI | TTCGAA | 1 cut(s) | 552 |
| SmlI | CTYRAG | 2 cut(s) | 61, 278 |
| SmoI | CTYRAG | 2 cut(s) | 61, 278 |
| Sse9I | AATT | 2 cut(s) | 73, 517 |
| SsiI | CCGC | 3 cut(s) | 50, 629, 743 |
| SspMI | CTAG | 3 cut(s) | 308, 491, 702 |
| SstI | GAGCTC | 1 cut(s) | 9 |
| TaaI | ACNGT | 2 cut(s) | 163, 594 |
| TaiI | ACGT | 1 cut(s) | 482 |
| TaqI | TCGA | 3 cut(s) | 185, 552, 739 |
| TasI | AATT | 2 cut(s) | 73, 517 |
| TatI | WGTACW | 1 cut(s) | 310 |
| TauI | GCSGC | 1 cut(s) | 53 |
| TfiI | GAWTC | 2 cut(s) | 285, 368 |
| Tru1I | TTAA | 6 cut(s) | 62, 126, 255, 279, 387, 437 |
| Tru9I | TTAA | 6 cut(s) | 62, 126, 255, 279, 387, 437 |
| TseFI | GTSAC | 1 cut(s) | 620 |
| Tsp45I | GTSAC | 1 cut(s) | 620 |
| TspDTI | ATGAA | 5 cut(s) | 137, 253, 462, 517, 698 |
| TspGWI | ACGGA | 2 cut(s) | 85, 493 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 687 |
| Vha464I | CTTAAG | 2 cut(s) | 61, 278 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 702 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XceI | RCATGY | 3 cut(s) | 349, 358, 366 |
| XmiI | GTMKAC | 1 cut(s) | 67 |
| XspI | CTAG | 3 cut(s) | 308, 491, 702 |
| ZraI | GACGTC | 1 cut(s) | 480 |