Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 481 |
| AclWI | GGATC | 1 cut(s) | 82 |
| AfaI | GTAC | 2 cut(s) | 131, 413 |
| AgsI | TTSAA | 3 cut(s) | 473, 478, 507 |
| AluBI | AGCT | 1 cut(s) | 370 |
| AluI | AGCT | 1 cut(s) | 370 |
| Alw21I | GWGCWC | 1 cut(s) | 241 |
| AlwI | GGATC | 1 cut(s) | 82 |
| Ama87I | CYCGRG | 1 cut(s) | 41 |
| ApeKI | GCWGC | 2 cut(s) | 304, 307 |
| AspLEI | GCGC | 1 cut(s) | 101 |
| AspS9I | GGNCC | 1 cut(s) | 351 |
| AsuHPI | GGTGA | 1 cut(s) | 256 |
| AvaI | CYCGRG | 1 cut(s) | 41 |
| AvaII | GGWCC | 1 cut(s) | 351 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 403, 436 |
| Bbv12I | GWGCWC | 1 cut(s) | 241 |
| BbvI | GCAGC | 2 cut(s) | 291, 319 |
| BccI | CCATC | 1 cut(s) | 494 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 159, 193 |
| BfaI | CTAG | 3 cut(s) | 133, 185, 245 |
| BfmI | CTRYAG | 1 cut(s) | 305 |
| BfoI | RGCGCY | 1 cut(s) | 102 |
| BisI | GCNGC | 3 cut(s) | 305, 308, 482 |
| BlsI | GCNGC | 3 cut(s) | 306, 309, 483 |
| Bme18I | GGWCC | 1 cut(s) | 351 |
| BmeT110I | CYCGRG | 1 cut(s) | 41 |
| BmgT120I | GGNCC | 1 cut(s) | 351 |
| BmiI | GGNNCC | 1 cut(s) | 352 |
| Bsa29I | ATCGAT | 1 cut(s) | 323 |
| Bse118I | RCCGGY | 1 cut(s) | 81 |
| Bse3DI | GCAATG | 2 cut(s) | 300, 491 |
| BseCI | ATCGAT | 1 cut(s) | 323 |
| BseGI | GGATG | 1 cut(s) | 505 |
| BseMI | GCAATG | 2 cut(s) | 300, 491 |
| BseMII | CTCAG | 1 cut(s) | 391 |
| BseXI | GCAGC | 2 cut(s) | 291, 319 |
| BshVI | ATCGAT | 1 cut(s) | 323 |
| BsiHKAI | GWGCWC | 1 cut(s) | 241 |
| BsiHKCI | CYCGRG | 1 cut(s) | 41 |
| BsiSI | CCGG | 1 cut(s) | 82 |
| BslFI | GGGAC | 1 cut(s) | 364 |
| BsmFI | GGGAC | 1 cut(s) | 364 |
| BsoBI | CYCGRG | 1 cut(s) | 41 |
| Bsp1286I | GDGCHC | 1 cut(s) | 241 |
| Bsp143I | GATC | 2 cut(s) | 87, 324 |
| BspACI | CCGC | 1 cut(s) | 481 |
| BspCNI | CTCAG | 1 cut(s) | 390 |
| BspDI | ATCGAT | 1 cut(s) | 323 |
| BspLI | GGNNCC | 1 cut(s) | 352 |
| BspMAI | CTGCAG | 1 cut(s) | 309 |
| BspPI | GGATC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 2 cut(s) | 300, 491 |
| BsrFI | RCCGGY | 1 cut(s) | 81 |
| BssAI | RCCGGY | 1 cut(s) | 81 |
| BssMI | GATC | 2 cut(s) | 87, 324 |
| Bst4CI | ACNGT | 3 cut(s) | 236, 416, 469 |
| Bst6I | CTCTTC | 2 cut(s) | 185, 266 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 10 |
| BstC8I | GCNNGC | 2 cut(s) | 11, 291 |
| BstDEI | CTNAG | 1 cut(s) | 377 |
| BstF5I | GGATG | 1 cut(s) | 505 |
| BstH2I | RGCGCY | 1 cut(s) | 102 |
| BstHHI | GCGC | 1 cut(s) | 101 |
| BstKTI | GATC | 2 cut(s) | 90, 327 |
| BstMBI | GATC | 2 cut(s) | 87, 324 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 67, 151, 236 |
| BstNSI | RCATGY | 1 cut(s) | 13 |
| BstSFI | CTRYAG | 1 cut(s) | 305 |
| BstV1I | GCAGC | 2 cut(s) | 291, 319 |
| Bsu15I | ATCGAT | 1 cut(s) | 323 |
| BsuTUI | ATCGAT | 1 cut(s) | 323 |
| BtsCI | GGATG | 1 cut(s) | 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 465 |
| Cac8I | GCNNGC | 2 cut(s) | 11, 291 |
| CfoI | GCGC | 1 cut(s) | 101 |
| Cfr10I | RCCGGY | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 1 cut(s) | 351 |
| ClaI | ATCGAT | 1 cut(s) | 323 |
| Csp6I | GTAC | 2 cut(s) | 130, 412 |
| CviAII | CATG | 2 cut(s) | 10, 151 |
| CviJI | RGCY | 6 cut(s) | 61, 85, 145, 209, 304, 370 |
| CviKI_1 | RGCY | 6 cut(s) | 61, 85, 145, 209, 304, 370 |
| CviQI | GTAC | 2 cut(s) | 130, 412 |
| DdeI | CTNAG | 1 cut(s) | 377 |
| DpnI | GATC | 2 cut(s) | 89, 326 |
| DpnII | GATC | 2 cut(s) | 87, 324 |
| Eam1104I | CTCTTC | 2 cut(s) | 185, 266 |
| EarI | CTCTTC | 2 cut(s) | 185, 266 |
| Eco32I | GATATC | 1 cut(s) | 48 |
| Eco47I | GGWCC | 1 cut(s) | 351 |
| Eco88I | CYCGRG | 1 cut(s) | 41 |
| EcoO109I | RGGNCCY | 1 cut(s) | 351 |
| EcoRV | GATATC | 1 cut(s) | 48 |
| EcoT22I | ATGCAT | 1 cut(s) | 320 |
| FaeI | CATG | 2 cut(s) | 13, 154 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 29, 245, 277 |
| FaqI | GGGAC | 1 cut(s) | 364 |
| FatI | CATG | 2 cut(s) | 9, 150 |
| Fnu4HI | GCNGC | 3 cut(s) | 305, 308, 482 |
| FokI | GGATG | 1 cut(s) | 512 |
| Fsp4HI | GCNGC | 3 cut(s) | 305, 308, 482 |
| FspBI | CTAG | 3 cut(s) | 133, 185, 245 |
| GlaI | GCGC | 1 cut(s) | 100 |
| GluI | GCNGC | 3 cut(s) | 305, 308, 482 |
| HaeII | RGCGCY | 1 cut(s) | 102 |
| HapII | CCGG | 1 cut(s) | 82 |
| HhaI | GCGC | 1 cut(s) | 101 |
| Hin1II | CATG | 2 cut(s) | 13, 154 |
| Hin6I | GCGC | 1 cut(s) | 99 |
| HinP1I | GCGC | 1 cut(s) | 99 |
| HincII | GTYRAC | 1 cut(s) | 491 |
| HindII | GTYRAC | 1 cut(s) | 491 |
| HinfI | GANTC | 1 cut(s) | 256 |
| HpaI | GTTAAC | 1 cut(s) | 491 |
| HpaII | CCGG | 1 cut(s) | 82 |
| HphI | GGTGA | 1 cut(s) | 256 |
| Hpy166II | GTNNAC | 1 cut(s) | 491 |
| Hpy188I | TCNGA | 1 cut(s) | 380 |
| Hpy188III | TCNNGA | 4 cut(s) | 43, 117, 349, 426 |
| Hpy8I | GTNNAC | 1 cut(s) | 491 |
| HpyAV | CCTTC | 3 cut(s) | 102, 198, 501 |
| HpyCH4III | ACNGT | 3 cut(s) | 236, 416, 469 |
| HpyCH4V | TGCA | 7 cut(s) | 274, 293, 307, 318, 397, 444, 465 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 67, 151, 236 |
| HpyF3I | CTNAG | 1 cut(s) | 377 |
| Hsp92II | CATG | 2 cut(s) | 13, 154 |
| HspAI | GCGC | 1 cut(s) | 99 |
| KspAI | GTTAAC | 1 cut(s) | 491 |
| Kzo9I | GATC | 2 cut(s) | 87, 324 |
| LpnPI | CCDG | 7 cut(s) | 81, 95, 102, 303, 367, 411, 420 |
| Lsp1109I | GCAGC | 2 cut(s) | 291, 319 |
| MaeI | CTAG | 3 cut(s) | 133, 185, 245 |
| MalI | GATC | 2 cut(s) | 89, 326 |
| MboI | GATC | 2 cut(s) | 87, 324 |
| MboII | GAAGA | 3 cut(s) | 202, 253, 265 |
| MfeI | CAATTG | 1 cut(s) | 473 |
| MhlI | GDGCHC | 1 cut(s) | 241 |
| MluCI | AATT | 3 cut(s) | 391, 460, 473 |
| MnlI | CCTC | 5 cut(s) | 19, 83, 164, 211, 277 |
| Mph1103I | ATGCAT | 1 cut(s) | 320 |
| MseI | TTAA | 2 cut(s) | 361, 490 |
| MspI | CCGG | 1 cut(s) | 82 |
| MunI | CAATTG | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 67, 151, 236 |
| NdeII | GATC | 2 cut(s) | 87, 324 |
| NlaIII | CATG | 2 cut(s) | 13, 154 |
| NlaIV | GGNNCC | 1 cut(s) | 352 |
| NsiI | ATGCAT | 1 cut(s) | 320 |
| NspI | RCATGY | 1 cut(s) | 13 |
| PaeI | GCATGC | 1 cut(s) | 13 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| PkrI | GCNGC | 3 cut(s) | 306, 309, 483 |
| PpuMI | RGGWCCY | 1 cut(s) | 351 |
| Psp5II | RGGWCCY | 1 cut(s) | 351 |
| PspN4I | GGNNCC | 1 cut(s) | 352 |
| PspPI | GGNCC | 1 cut(s) | 351 |
| PspPPI | RGGWCCY | 1 cut(s) | 351 |
| PstI | CTGCAG | 1 cut(s) | 309 |
| RsaI | GTAC | 2 cut(s) | 131, 413 |
| RsaNI | GTAC | 2 cut(s) | 130, 412 |
| SaqAI | TTAA | 2 cut(s) | 361, 490 |
| SatI | GCNGC | 3 cut(s) | 305, 308, 482 |
| Sau3AI | GATC | 2 cut(s) | 87, 324 |
| Sau96I | GGNCC | 1 cut(s) | 351 |
| SduI | GDGCHC | 1 cut(s) | 241 |
| SetI | ASST | 7 cut(s) | 131, 138, 222, 269, 356, 367, 372 |
| SfcI | CTRYAG | 1 cut(s) | 305 |
| SinI | GGWCC | 1 cut(s) | 351 |
| SphI | GCATGC | 1 cut(s) | 13 |
| Sse9I | AATT | 3 cut(s) | 391, 460, 473 |
| SsiI | CCGC | 1 cut(s) | 481 |
| SspMI | CTAG | 3 cut(s) | 133, 185, 245 |
| TaaI | ACNGT | 3 cut(s) | 236, 416, 469 |
| TaqI | TCGA | 1 cut(s) | 323 |
| TasI | AATT | 3 cut(s) | 391, 460, 473 |
| TauI | GCSGC | 1 cut(s) | 484 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| Tru1I | TTAA | 2 cut(s) | 361, 490 |
| Tru9I | TTAA | 2 cut(s) | 361, 490 |
| TscAI | CASTG | 1 cut(s) | 472 |
| TseI | GCWGC | 2 cut(s) | 304, 307 |
| TspDTI | ATGAA | 1 cut(s) | 139 |
| TspRI | CASTG | 1 cut(s) | 472 |
| VpaK11BI | GGWCC | 1 cut(s) | 351 |
| XceI | RCATGY | 1 cut(s) | 13 |
| XspI | CTAG | 3 cut(s) | 133, 185, 245 |
| Zsp2I | ATGCAT | 1 cut(s) | 320 |