Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 6 - 96 | 3.2e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 53 |
| AciI | CCGC | 1 cut(s) | 51 |
| AcsI | RAATTY | 1 cut(s) | 246 |
| AfaI | GTAC | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 165, 166 |
| AgsI | TTSAA | 2 cut(s) | 131, 164 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 223 |
| AluBI | AGCT | 1 cut(s) | 291 |
| AluI | AGCT | 1 cut(s) | 291 |
| Alw26I | GTCTC | 1 cut(s) | 201 |
| ApoI | RAATTY | 1 cut(s) | 246 |
| AsuHPI | GGTGA | 1 cut(s) | 285 |
| BcoDI | GTCTC | 1 cut(s) | 201 |
| BfaI | CTAG | 1 cut(s) | 301 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 223 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 167, 197 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 165, 166 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 165, 166 |
| BseRI | GAGGAG | 2 cut(s) | 185, 188 |
| Bsh1236I | CGCG | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 165, 166 |
| BsmAI | GTCTC | 1 cut(s) | 201 |
| Bsp1407I | TGTACA | 1 cut(s) | 100 |
| BspACI | CCGC | 1 cut(s) | 51 |
| BspFNI | CGCG | 1 cut(s) | 53 |
| BsrGI | TGTACA | 1 cut(s) | 100 |
| Bst4CI | ACNGT | 2 cut(s) | 33, 212 |
| BstAUI | TGTACA | 1 cut(s) | 100 |
| BstFNI | CGCG | 1 cut(s) | 53 |
| BstMAI | GTCTC | 1 cut(s) | 201 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 23, 50, 297 |
| BstNSI | RCATGY | 2 cut(s) | 44, 78 |
| BstUI | CGCG | 1 cut(s) | 53 |
| Csp6I | GTAC | 1 cut(s) | 101 |
| CviAII | CATG | 2 cut(s) | 41, 75 |
| CviJI | RGCY | 1 cut(s) | 291 |
| CviKI_1 | RGCY | 1 cut(s) | 291 |
| CviQI | GTAC | 1 cut(s) | 101 |
| DraI | TTTAAA | 1 cut(s) | 37 |
| DriI | GACNNNNNGTC | 1 cut(s) | 223 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 223 |
| EcoRI | GAATTC | 1 cut(s) | 246 |
| FaeI | CATG | 2 cut(s) | 44, 78 |
| FaiI | YATR | 7 cut(s) | 42, 62, 76, 141, 222, 224, 278 |
| FatI | CATG | 2 cut(s) | 40, 74 |
| FspBI | CTAG | 1 cut(s) | 301 |
| Hin1II | CATG | 2 cut(s) | 44, 78 |
| HinfI | GANTC | 1 cut(s) | 12 |
| HphI | GGTGA | 1 cut(s) | 285 |
| Hpy166II | GTNNAC | 1 cut(s) | 101 |
| Hpy8I | GTNNAC | 1 cut(s) | 101 |
| HpyCH4III | ACNGT | 2 cut(s) | 33, 212 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 23, 50, 297 |
| Hsp92II | CATG | 2 cut(s) | 44, 78 |
| LmnI | GCTCC | 1 cut(s) | 114 |
| LpnPI | CCDG | 2 cut(s) | 69, 247 |
| MaeI | CTAG | 1 cut(s) | 301 |
| MaeIII | GTNAC | 1 cut(s) | 90 |
| MluCI | AATT | 1 cut(s) | 246 |
| MmeI | TCCRAC | 1 cut(s) | 92 |
| MnlI | CCTC | 5 cut(s) | 64, 163, 166, 169, 181 |
| MseI | TTAA | 2 cut(s) | 36, 56 |
| MssI | GTTTAAAC | 1 cut(s) | 37 |
| MvnI | CGCG | 1 cut(s) | 53 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 23, 50, 297 |
| NlaIII | CATG | 2 cut(s) | 44, 78 |
| NspI | RCATGY | 2 cut(s) | 44, 78 |
| PfeI | GAWTC | 1 cut(s) | 12 |
| PmeI | GTTTAAAC | 1 cut(s) | 37 |
| RsaI | GTAC | 1 cut(s) | 102 |
| RsaNI | GTAC | 1 cut(s) | 101 |
| SaqAI | TTAA | 2 cut(s) | 36, 56 |
| SetI | ASST | 5 cut(s) | 88, 112, 192, 293, 298 |
| Sse9I | AATT | 1 cut(s) | 246 |
| SsiI | CCGC | 1 cut(s) | 51 |
| SspMI | CTAG | 1 cut(s) | 301 |
| TaaI | ACNGT | 2 cut(s) | 33, 212 |
| TaqI | TCGA | 2 cut(s) | 196, 250 |
| TasI | AATT | 1 cut(s) | 246 |
| TatI | WGTACW | 1 cut(s) | 100 |
| TfiI | GAWTC | 1 cut(s) | 12 |
| Tru1I | TTAA | 2 cut(s) | 36, 56 |
| Tru9I | TTAA | 2 cut(s) | 36, 56 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| XapI | RAATTY | 1 cut(s) | 246 |
| XceI | RCATGY | 2 cut(s) | 44, 78 |
| XspI | CTAG | 1 cut(s) | 301 |