Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aldedh | PF00171 | 36 - 490 | 1.8e-133 | Aldehyde dehydrogenase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1120 |
| AccB1I | GGYRCC | 2 cut(s) | 232, 1391 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 216 |
| AciI | CCGC | 2 cut(s) | 660, 1389 |
| AclWI | GGATC | 2 cut(s) | 418, 1117 |
| AcoI | YGGCCR | 1 cut(s) | 1423 |
| AcsI | RAATTY | 4 cut(s) | 29, 1051, 1220, 1305 |
| AcuI | CTGAAG | 2 cut(s) | 357, 699 |
| AfaI | GTAC | 3 cut(s) | 886, 1263, 1477 |
| AfeI | AGCGCT | 1 cut(s) | 899 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 216, 242, 319, 1045, 1373 |
| AflIII | ACRYGT | 1 cut(s) | 1472 |
| AgsI | TTSAA | 7 cut(s) | 121, 496, 741, 761, 800, 1225, 1252 |
| AhlI | ACTAGT | 1 cut(s) | 961 |
| AjnI | CCWGG | 2 cut(s) | 64, 717 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 32, 64, 1179, 1211 |
| AleI | CACNNNNGTG | 1 cut(s) | 158 |
| AluBI | AGCT | 5 cut(s) | 610, 677, 850, 1175, 1281 |
| AluI | AGCT | 5 cut(s) | 610, 677, 850, 1175, 1281 |
| Alw21I | GWGCWC | 1 cut(s) | 574 |
| Alw26I | GTCTC | 1 cut(s) | 1456 |
| Alw44I | GTGCAC | 1 cut(s) | 570 |
| AlwI | GGATC | 2 cut(s) | 418, 1117 |
| Ama87I | CYCGRG | 2 cut(s) | 314, 644 |
| Aor51HI | AGCGCT | 1 cut(s) | 899 |
| AoxI | GGCC | 6 cut(s) | 100, 279, 1022, 1071, 1325, 1423 |
| ApaLI | GTGCAC | 1 cut(s) | 570 |
| ApeKI | GCWGC | 4 cut(s) | 875, 900, 1141, 1172 |
| ApoI | RAATTY | 4 cut(s) | 29, 1051, 1220, 1305 |
| AspLEI | GCGC | 3 cut(s) | 538, 900, 1379 |
| AspS9I | GGNCC | 6 cut(s) | 101, 279, 1022, 1071, 1199, 1325 |
| AsuC2I | CCSGG | 2 cut(s) | 645, 646 |
| AsuHPI | GGTGA | 5 cut(s) | 257, 649, 698, 1028, 1192 |
| AvaI | CYCGRG | 2 cut(s) | 314, 644 |
| AvaII | GGWCC | 1 cut(s) | 1199 |
| BaeGI | GKGCMC | 1 cut(s) | 574 |
| BanI | GGYRCC | 2 cut(s) | 232, 1391 |
| BbsI | GAAGAC | 1 cut(s) | 227 |
| Bbv12I | GWGCWC | 1 cut(s) | 574 |
| BbvI | GCAGC | 4 cut(s) | 887, 887, 1153, 1184 |
| BccI | CCATC | 3 cut(s) | 313, 513, 1121 |
| BceAI | ACGGC | 5 cut(s) | 246, 381, 494, 863, 897 |
| BciT130I | CCWGG | 2 cut(s) | 66, 719 |
| BciVI | GTATCC | 1 cut(s) | 319 |
| BcnI | CCSGG | 2 cut(s) | 645, 646 |
| BcoDI | GTCTC | 1 cut(s) | 1456 |
| BcuI | ACTAGT | 1 cut(s) | 961 |
| BfaI | CTAG | 3 cut(s) | 962, 1016, 1528 |
| BfmI | CTRYAG | 5 cut(s) | 126, 165, 1101, 1116, 1170 |
| BfoI | RGCGCY | 2 cut(s) | 901, 1380 |
| BfuI | GTATCC | 1 cut(s) | 319 |
| BisI | GCNGC | 4 cut(s) | 876, 901, 1142, 1173 |
| BlsI | GCNGC | 4 cut(s) | 877, 902, 1143, 1174 |
| Bme1390I | CCNGG | 4 cut(s) | 66, 645, 646, 719 |
| Bme18I | GGWCC | 1 cut(s) | 1199 |
| BmeT110I | CYCGRG | 2 cut(s) | 314, 644 |
| BmgT120I | GGNCC | 6 cut(s) | 101, 279, 1022, 1071, 1199, 1325 |
| BmiI | GGNNCC | 4 cut(s) | 234, 995, 1072, 1393 |
| BmrFI | CCNGG | 4 cut(s) | 66, 645, 646, 719 |
| BmrI | ACTGGG | 1 cut(s) | 98 |
| BmsI | GCATC | 3 cut(s) | 215, 259, 826 |
| BmuI | ACTGGG | 1 cut(s) | 98 |
| BpiI | GAAGAC | 1 cut(s) | 227 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| Bpu10I | CCTNAGC | 2 cut(s) | 147, 1509 |
| BpuEI | CTTGAG | 1 cut(s) | 647 |
| BpuMI | CCSGG | 2 cut(s) | 645, 646 |
| Bsa29I | ATCGAT | 1 cut(s) | 366 |
| BsaJI | CCNNGG | 4 cut(s) | 618, 644, 645, 717 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 666, 696 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 216, 242, 319, 1045, 1373 |
| Bse1I | ACTGG | 6 cut(s) | 103, 104, 736, 1039, 1202, 1420 |
| BseBI | CCWGG | 2 cut(s) | 66, 719 |
| BseCI | ATCGAT | 1 cut(s) | 366 |
| BseDI | CCNNGG | 4 cut(s) | 618, 644, 645, 717 |
| BseGI | GGATG | 3 cut(s) | 206, 524, 838 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 216, 242, 319, 1045, 1373 |
| BseMII | CTCAG | 4 cut(s) | 438, 1097, 1371, 1523 |
| BseNI | ACTGG | 6 cut(s) | 103, 104, 736, 1039, 1202, 1420 |
| BseRI | GAGGAG | 1 cut(s) | 194 |
| BseSI | GKGCMC | 1 cut(s) | 574 |
| BseXI | GCAGC | 4 cut(s) | 887, 887, 1153, 1184 |
| BsgI | GTGCAG | 2 cut(s) | 886, 1160 |
| BshFI | GGCC | 6 cut(s) | 102, 281, 1024, 1073, 1327, 1425 |
| BshNI | GGYRCC | 2 cut(s) | 232, 1391 |
| BshVI | ATCGAT | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 574 |
| BsiHKCI | CYCGRG | 2 cut(s) | 314, 644 |
| BsiSI | CCGG | 1 cut(s) | 645 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 216, 242, 319, 1045, 1373 |
| BsmAI | GTCTC | 1 cut(s) | 1456 |
| BsmBI | CGTCTC | 1 cut(s) | 1456 |
| BsmI | GAATGC | 2 cut(s) | 186, 529 |
| BsnI | GGCC | 6 cut(s) | 102, 281, 1024, 1073, 1327, 1425 |
| BsoBI | CYCGRG | 2 cut(s) | 314, 644 |
| Bsp1286I | GDGCHC | 1 cut(s) | 574 |
| Bsp1407I | TGTACA | 1 cut(s) | 1475 |
| Bsp143I | GATC | 3 cut(s) | 42, 410, 1109 |
| BspACI | CCGC | 2 cut(s) | 660, 1389 |
| BspANI | GGCC | 6 cut(s) | 102, 281, 1024, 1073, 1327, 1425 |
| BspCNI | CTCAG | 4 cut(s) | 437, 1096, 1372, 1522 |
| BspDI | ATCGAT | 1 cut(s) | 366 |
| BspHI | TCATGA | 1 cut(s) | 928 |
| BspLI | GGNNCC | 4 cut(s) | 234, 995, 1072, 1393 |
| BspMAI | CTGCAG | 2 cut(s) | 130, 1174 |
| BspPI | GGATC | 2 cut(s) | 418, 1117 |
| BspT107I | GGYRCC | 2 cut(s) | 232, 1391 |
| BsrGI | TGTACA | 1 cut(s) | 1475 |
| BsrI | ACTGG | 6 cut(s) | 103, 104, 736, 1039, 1202, 1420 |
| BssECI | CCNNGG | 4 cut(s) | 618, 644, 645, 717 |
| BssMI | GATC | 3 cut(s) | 42, 410, 1109 |
| Bst2UI | CCWGG | 2 cut(s) | 66, 719 |
| Bst4CI | ACNGT | 2 cut(s) | 554, 1117 |
| Bst6I | CTCTTC | 1 cut(s) | 233 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 909 |
| BstAUI | TGTACA | 1 cut(s) | 1475 |
| BstC8I | GCNNGC | 3 cut(s) | 196, 529, 852 |
| BstDEI | CTNAG | 5 cut(s) | 147, 424, 1083, 1380, 1509 |
| BstF5I | GGATG | 3 cut(s) | 206, 524, 838 |
| BstH2I | RGCGCY | 2 cut(s) | 901, 1380 |
| BstHHI | GCGC | 3 cut(s) | 538, 900, 1379 |
| BstKTI | GATC | 3 cut(s) | 45, 413, 1112 |
| BstMAI | GTCTC | 1 cut(s) | 1456 |
| BstMBI | GATC | 3 cut(s) | 42, 410, 1109 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 278, 533, 856, 909 |
| BstNI | CCWGG | 2 cut(s) | 66, 719 |
| BstNSI | RCATGY | 2 cut(s) | 912, 1476 |
| BstSCI | CCNGG | 4 cut(s) | 64, 643, 644, 717 |
| BstSFI | CTRYAG | 5 cut(s) | 126, 165, 1101, 1116, 1170 |
| BstSLI | GKGCMC | 1 cut(s) | 574 |
| BstV1I | GCAGC | 4 cut(s) | 887, 887, 1153, 1184 |
| BstV2I | GAAGAC | 1 cut(s) | 227 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 366 |
| BsuI | GTATCC | 1 cut(s) | 319 |
| BsuRI | GGCC | 6 cut(s) | 102, 281, 1024, 1073, 1327, 1425 |
| BsuTUI | ATCGAT | 1 cut(s) | 366 |
| BtsCI | GGATG | 3 cut(s) | 206, 524, 838 |
| BtsI | GCAGTG | 4 cut(s) | 205, 486, 861, 1342 |
| BtsIMutI | CAGTG | 6 cut(s) | 205, 486, 729, 778, 861, 1342 |
| Cac8I | GCNNGC | 3 cut(s) | 196, 529, 852 |
| CciI | TCATGA | 1 cut(s) | 928 |
| CfoI | GCGC | 3 cut(s) | 538, 900, 1379 |
| Cfr13I | GGNCC | 6 cut(s) | 101, 279, 1022, 1071, 1199, 1325 |
| Cfr9I | CCCGGG | 1 cut(s) | 644 |
| ClaI | ATCGAT | 1 cut(s) | 366 |
| CseI | GACGC | 1 cut(s) | 1473 |
| Csp6I | GTAC | 3 cut(s) | 885, 1262, 1476 |
| CviAII | CATG | 6 cut(s) | 442, 504, 909, 929, 1459, 1473 |
| CviQI | GTAC | 3 cut(s) | 885, 1262, 1476 |
| DdeI | CTNAG | 5 cut(s) | 147, 424, 1083, 1380, 1509 |
| DpnI | GATC | 3 cut(s) | 44, 412, 1111 |
| DpnII | GATC | 3 cut(s) | 42, 410, 1109 |
| DraI | TTTAAA | 1 cut(s) | 1315 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1120 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1120 |
| EaeI | YGGCCR | 1 cut(s) | 1423 |
| Eam1104I | CTCTTC | 1 cut(s) | 233 |
| EarI | CTCTTC | 1 cut(s) | 233 |
| Eco47I | GGWCC | 1 cut(s) | 1199 |
| Eco47III | AGCGCT | 1 cut(s) | 899 |
| Eco57I | CTGAAG | 2 cut(s) | 357, 699 |
| Eco88I | CYCGRG | 2 cut(s) | 314, 644 |
| EcoRII | CCWGG | 2 cut(s) | 64, 717 |
| EcoT22I | ATGCAT | 1 cut(s) | 274 |
| Esp3I | CGTCTC | 1 cut(s) | 1456 |
| FaeI | CATG | 6 cut(s) | 445, 507, 912, 932, 1462, 1476 |
| FatI | CATG | 6 cut(s) | 441, 503, 908, 928, 1458, 1472 |
| Fnu4HI | GCNGC | 4 cut(s) | 876, 901, 1142, 1173 |
| FokI | GGATG | 3 cut(s) | 193, 531, 845 |
| Fsp4HI | GCNGC | 4 cut(s) | 876, 901, 1142, 1173 |
| FspBI | CTAG | 3 cut(s) | 962, 1016, 1528 |
| GlaI | GCGC | 3 cut(s) | 537, 899, 1378 |
| GluI | GCNGC | 4 cut(s) | 876, 901, 1142, 1173 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 2 cut(s) | 901, 1380 |
| HaeIII | GGCC | 6 cut(s) | 102, 281, 1024, 1073, 1327, 1425 |
| HapII | CCGG | 1 cut(s) | 645 |
| HgaI | GACGC | 1 cut(s) | 1473 |
| HhaI | GCGC | 3 cut(s) | 538, 900, 1379 |
| Hin1II | CATG | 6 cut(s) | 445, 507, 912, 932, 1462, 1476 |
| Hin6I | GCGC | 3 cut(s) | 536, 898, 1377 |
| HinP1I | GCGC | 3 cut(s) | 536, 898, 1377 |
| HincII | GTYRAC | 1 cut(s) | 401 |
| HindII | GTYRAC | 1 cut(s) | 401 |
| HinfI | GANTC | 4 cut(s) | 223, 460, 1228, 1442 |
| HpaII | CCGG | 1 cut(s) | 645 |
| HphI | GGTGA | 5 cut(s) | 257, 649, 698, 1028, 1192 |
| Hpy166II | GTNNAC | 3 cut(s) | 401, 572, 1360 |
| Hpy188I | TCNGA | 5 cut(s) | 427, 753, 945, 968, 1126 |
| Hpy8I | GTNNAC | 3 cut(s) | 401, 572, 1360 |
| HpyAV | CCTTC | 7 cut(s) | 85, 332, 559, 748, 1039, 1054, 1402 |
| HpyCH4III | ACNGT | 2 cut(s) | 554, 1117 |
| HpyCH4IV | ACGT | 1 cut(s) | 430 |
| HpyCH4V | TGCA | 9 cut(s) | 128, 198, 272, 572, 698, 875, 903, 1141, 1172 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 278, 533, 856, 909 |
| HpyF3I | CTNAG | 5 cut(s) | 147, 424, 1083, 1380, 1509 |
| HpySE526I | ACGT | 1 cut(s) | 430 |
| Hsp92II | CATG | 6 cut(s) | 445, 507, 912, 932, 1462, 1476 |
| HspAI | GCGC | 3 cut(s) | 536, 898, 1377 |
| Kzo9I | GATC | 3 cut(s) | 42, 410, 1109 |
| LmnI | GCTCC | 3 cut(s) | 674, 1437, 1491 |
| Lsp1109I | GCAGC | 4 cut(s) | 887, 887, 1153, 1184 |
| LweI | GCATC | 3 cut(s) | 215, 259, 826 |
| MaeI | CTAG | 3 cut(s) | 962, 1016, 1528 |
| MaeII | ACGT | 1 cut(s) | 430 |
| MaeIII | GTNAC | 5 cut(s) | 151, 245, 548, 589, 601 |
| MalI | GATC | 3 cut(s) | 44, 412, 1111 |
| MboI | GATC | 3 cut(s) | 42, 410, 1109 |
| MboII | GAAGA | 6 cut(s) | 52, 232, 250, 917, 1199, 1279 |
| MfeI | CAATTG | 2 cut(s) | 693, 1149 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 574 |
| MlyI | GAGTC | 3 cut(s) | 217, 1237, 1436 |
| MmeI | TCCRAC | 3 cut(s) | 367, 946, 1190 |
| MnlI | CCTC | 9 cut(s) | 163, 172, 175, 236, 323, 433, 445, 613, 771 |
| Mph1103I | ATGCAT | 1 cut(s) | 274 |
| MseI | TTAA | 5 cut(s) | 275, 803, 1077, 1274, 1314 |
| MslI | CAYNNNNRTG | 1 cut(s) | 158 |
| MspA1I | CMGCKG | 1 cut(s) | 1175 |
| MspI | CCGG | 1 cut(s) | 645 |
| MspR9I | CCNGG | 4 cut(s) | 66, 645, 646, 719 |
| MunI | CAATTG | 2 cut(s) | 693, 1149 |
| Mva1269I | GAATGC | 2 cut(s) | 186, 529 |
| MvaI | CCWGG | 2 cut(s) | 66, 719 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 278, 533, 856, 909 |
| NciI | CCSGG | 2 cut(s) | 645, 646 |
| NdeII | GATC | 3 cut(s) | 42, 410, 1109 |
| NlaIII | CATG | 6 cut(s) | 445, 507, 912, 932, 1462, 1476 |
| NlaIV | GGNNCC | 4 cut(s) | 234, 995, 1072, 1393 |
| NmeAIII | GCCGAG | 2 cut(s) | 643, 1451 |
| NmuCI | GTSAC | 3 cut(s) | 151, 245, 601 |
| NsiI | ATGCAT | 1 cut(s) | 274 |
| NspI | RCATGY | 2 cut(s) | 912, 1476 |
| OliI | CACNNNNGTG | 1 cut(s) | 158 |
| PaeR7I | CTCGAG | 1 cut(s) | 314 |
| PagI | TCATGA | 1 cut(s) | 928 |
| PciI | ACATGT | 1 cut(s) | 1472 |
| PctI | GAATGC | 2 cut(s) | 186, 529 |
| PfeI | GAWTC | 1 cut(s) | 460 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 216 |
| PkrI | GCNGC | 4 cut(s) | 877, 902, 1143, 1174 |
| PleI | GAGTC | 3 cut(s) | 217, 1236, 1436 |
| PpsI | GAGTC | 3 cut(s) | 217, 1236, 1436 |
| PscI | ACATGT | 1 cut(s) | 1472 |
| Psp6I | CCWGG | 2 cut(s) | 64, 717 |
| PspGI | CCWGG | 2 cut(s) | 64, 717 |
| PspN4I | GGNNCC | 4 cut(s) | 234, 995, 1072, 1393 |
| PspPI | GGNCC | 6 cut(s) | 101, 279, 1022, 1071, 1199, 1325 |
| PstI | CTGCAG | 2 cut(s) | 130, 1174 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| PvuII | CAGCTG | 1 cut(s) | 1175 |
| RsaI | GTAC | 3 cut(s) | 886, 1263, 1477 |
| RsaNI | GTAC | 3 cut(s) | 885, 1262, 1476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 158 |
| SaqAI | TTAA | 5 cut(s) | 275, 803, 1077, 1274, 1314 |
| SatI | GCNGC | 4 cut(s) | 876, 901, 1142, 1173 |
| Sau3AI | GATC | 3 cut(s) | 42, 410, 1109 |
| Sau96I | GGNCC | 6 cut(s) | 101, 279, 1022, 1071, 1199, 1325 |
| SchI | GAGTC | 3 cut(s) | 217, 1237, 1436 |
| ScrFI | CCNGG | 4 cut(s) | 66, 645, 646, 719 |
| SduI | GDGCHC | 1 cut(s) | 574 |
| SfaNI | GCATC | 3 cut(s) | 215, 259, 826 |
| SfcI | CTRYAG | 5 cut(s) | 126, 165, 1101, 1116, 1170 |
| Sfr274I | CTCGAG | 1 cut(s) | 314 |
| SinI | GGWCC | 1 cut(s) | 1199 |
| SlaI | CTCGAG | 1 cut(s) | 314 |
| SmaI | CCCGGG | 1 cut(s) | 646 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 158 |
| SmlI | CTYRAG | 2 cut(s) | 314, 626 |
| SmoI | CTYRAG | 2 cut(s) | 314, 626 |
| SpeI | ACTAGT | 1 cut(s) | 961 |
| SsiI | CCGC | 2 cut(s) | 660, 1389 |
| SspMI | CTAG | 3 cut(s) | 962, 1016, 1528 |
| StyD4I | CCNGG | 4 cut(s) | 64, 643, 644, 717 |
| TaaI | ACNGT | 2 cut(s) | 554, 1117 |
| TaiI | ACGT | 1 cut(s) | 433 |
| TaqI | TCGA | 5 cut(s) | 315, 366, 846, 1043, 1112 |
| TatI | WGTACW | 1 cut(s) | 1475 |
| TfiI | GAWTC | 1 cut(s) | 460 |
| Tru1I | TTAA | 5 cut(s) | 275, 803, 1077, 1274, 1314 |
| Tru9I | TTAA | 5 cut(s) | 275, 803, 1077, 1274, 1314 |
| TscAI | CASTG | 6 cut(s) | 205, 493, 736, 778, 861, 1342 |
| TseFI | GTSAC | 3 cut(s) | 151, 245, 601 |
| TseI | GCWGC | 4 cut(s) | 875, 900, 1141, 1172 |
| Tsp45I | GTSAC | 3 cut(s) | 151, 245, 601 |
| TspDTI | ATGAA | 7 cut(s) | 42, 64, 714, 917, 945, 1232, 1251 |
| TspGWI | ACGGA | 3 cut(s) | 71, 170, 1249 |
| TspMI | CCCGGG | 1 cut(s) | 644 |
| TspRI | CASTG | 6 cut(s) | 205, 493, 736, 778, 861, 1342 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 216 |
| VneI | GTGCAC | 1 cut(s) | 570 |
| VpaK11BI | GGWCC | 1 cut(s) | 1199 |
| XapI | RAATTY | 4 cut(s) | 29, 1051, 1220, 1305 |
| XceI | RCATGY | 2 cut(s) | 912, 1476 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 826 |
| XhoI | CTCGAG | 1 cut(s) | 314 |
| XmaI | CCCGGG | 1 cut(s) | 644 |
| XspI | CTAG | 3 cut(s) | 962, 1016, 1528 |
| Zsp2I | ATGCAT | 1 cut(s) | 274 |