Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF538 | PF04398 | 17 - 101 | 4.6e-21 | Protein of unknown function, DUF538 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 600 |
| AccI | GTMKAC | 1 cut(s) | 489 |
| AccII | CGCG | 1 cut(s) | 179 |
| AciI | CCGC | 2 cut(s) | 151, 257 |
| AclWI | GGATC | 3 cut(s) | 195, 296, 487 |
| AcoI | YGGCCR | 1 cut(s) | 82 |
| AcuI | CTGAAG | 1 cut(s) | 212 |
| AfaI | GTAC | 3 cut(s) | 131, 140, 207 |
| AflIII | ACRYGT | 1 cut(s) | 620 |
| AgsI | TTSAA | 3 cut(s) | 368, 471, 529 |
| AjiI | CACGTC | 2 cut(s) | 232, 663 |
| AjnI | CCWGG | 1 cut(s) | 74 |
| AluBI | AGCT | 6 cut(s) | 166, 171, 303, 371, 476, 510 |
| AluI | AGCT | 6 cut(s) | 166, 171, 303, 371, 476, 510 |
| Alw21I | GWGCWC | 1 cut(s) | 610 |
| Alw26I | GTCTC | 2 cut(s) | 61, 140 |
| AlwI | GGATC | 3 cut(s) | 195, 296, 487 |
| Ama87I | CYCGRG | 1 cut(s) | 609 |
| AoxI | GGCC | 2 cut(s) | 82, 436 |
| ApeKI | GCWGC | 1 cut(s) | 581 |
| AspLEI | GCGC | 1 cut(s) | 179 |
| AsuC2I | CCSGG | 1 cut(s) | 340 |
| AsuHPI | GGTGA | 2 cut(s) | 148, 271 |
| AvaI | CYCGRG | 1 cut(s) | 609 |
| Bbv12I | GWGCWC | 1 cut(s) | 610 |
| BbvI | GCAGC | 1 cut(s) | 593 |
| BccI | CCATC | 3 cut(s) | 34, 69, 74 |
| BceAI | ACGGC | 3 cut(s) | 190, 244, 569 |
| BciT130I | CCWGG | 1 cut(s) | 76 |
| BcnI | CCSGG | 1 cut(s) | 340 |
| BcoDI | GTCTC | 2 cut(s) | 61, 140 |
| BfuAI | ACCTGC | 1 cut(s) | 600 |
| BisI | GCNGC | 2 cut(s) | 257, 582 |
| BlpI | GCTNAGC | 1 cut(s) | 167 |
| BlsI | GCNGC | 2 cut(s) | 258, 583 |
| BmcAI | AGTACT | 1 cut(s) | 131 |
| Bme1390I | CCNGG | 2 cut(s) | 76, 340 |
| BmeT110I | CYCGRG | 1 cut(s) | 609 |
| BmgBI | CACGTC | 2 cut(s) | 232, 663 |
| BmrFI | CCNGG | 2 cut(s) | 76, 340 |
| BmsI | GCATC | 3 cut(s) | 162, 418, 555 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 167 |
| BpuEI | CTTGAG | 1 cut(s) | 417 |
| BpuMI | CCSGG | 1 cut(s) | 340 |
| BsaBI | GATNNNNATC | 1 cut(s) | 311 |
| BsaI | GGTCTC | 1 cut(s) | 140 |
| BsaJI | CCNNGG | 2 cut(s) | 75, 381 |
| BsaWI | WCCGGW | 1 cut(s) | 158 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 95, 125 |
| Bse8I | GATNNNNATC | 1 cut(s) | 311 |
| BseBI | CCWGG | 1 cut(s) | 76 |
| BseDI | CCNNGG | 2 cut(s) | 75, 381 |
| BseGI | GGATG | 3 cut(s) | 85, 241, 433 |
| BseJI | GATNNNNATC | 1 cut(s) | 311 |
| BseMII | CTCAG | 2 cut(s) | 158, 520 |
| BseXI | GCAGC | 1 cut(s) | 593 |
| Bsh1236I | CGCG | 1 cut(s) | 179 |
| BshFI | GGCC | 2 cut(s) | 84, 438 |
| BsiHKAI | GWGCWC | 1 cut(s) | 610 |
| BsiHKCI | CYCGRG | 1 cut(s) | 609 |
| BsiSI | CCGG | 3 cut(s) | 159, 339, 569 |
| BslFI | GGGAC | 1 cut(s) | 355 |
| BsmAI | GTCTC | 2 cut(s) | 61, 140 |
| BsmBI | CGTCTC | 1 cut(s) | 61 |
| BsmFI | GGGAC | 1 cut(s) | 355 |
| BsmI | GAATGC | 1 cut(s) | 198 |
| BsnI | GGCC | 2 cut(s) | 84, 438 |
| Bso31I | GGTCTC | 1 cut(s) | 140 |
| BsoBI | CYCGRG | 1 cut(s) | 609 |
| Bsp1286I | GDGCHC | 1 cut(s) | 610 |
| Bsp143I | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 167 |
| BspACI | CCGC | 2 cut(s) | 151, 257 |
| BspANI | GGCC | 2 cut(s) | 84, 438 |
| BspCNI | CTCAG | 2 cut(s) | 159, 519 |
| BspFNI | CGCG | 1 cut(s) | 179 |
| BspHI | TCATGA | 1 cut(s) | 291 |
| BspMI | ACCTGC | 1 cut(s) | 600 |
| BspPI | GGATC | 3 cut(s) | 195, 296, 487 |
| BspTNI | GGTCTC | 1 cut(s) | 140 |
| BssECI | CCNNGG | 2 cut(s) | 75, 381 |
| BssMI | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| BssNAI | GTATAC | 1 cut(s) | 490 |
| Bst1107I | GTATAC | 1 cut(s) | 490 |
| Bst2UI | CCWGG | 1 cut(s) | 76 |
| Bst4CI | ACNGT | 4 cut(s) | 111, 283, 494, 605 |
| BstDEI | CTNAG | 2 cut(s) | 167, 506 |
| BstF5I | GGATG | 3 cut(s) | 85, 241, 433 |
| BstFNI | CGCG | 1 cut(s) | 179 |
| BstHHI | GCGC | 1 cut(s) | 179 |
| BstKTI | GATC | 7 cut(s) | 54, 183, 190, 243, 291, 315, 482 |
| BstMAI | GTCTC | 2 cut(s) | 61, 140 |
| BstMBI | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 361, 377 |
| BstNI | CCWGG | 1 cut(s) | 76 |
| BstNSI | RCATGY | 2 cut(s) | 581, 624 |
| BstSCI | CCNGG | 2 cut(s) | 74, 338 |
| BstUI | CGCG | 1 cut(s) | 179 |
| BstV1I | GCAGC | 1 cut(s) | 593 |
| BstX2I | RGATCY | 2 cut(s) | 187, 479 |
| BstYI | RGATCY | 2 cut(s) | 187, 479 |
| BstZ17I | GTATAC | 1 cut(s) | 490 |
| BsuRI | GGCC | 2 cut(s) | 84, 438 |
| BtrI | CACGTC | 2 cut(s) | 232, 663 |
| BtsCI | GGATG | 3 cut(s) | 85, 241, 433 |
| BveI | ACCTGC | 1 cut(s) | 600 |
| CciI | TCATGA | 1 cut(s) | 291 |
| CfoI | GCGC | 1 cut(s) | 179 |
| Csp6I | GTAC | 3 cut(s) | 130, 139, 206 |
| CviAII | CATG | 4 cut(s) | 292, 440, 578, 621 |
| CviQI | GTAC | 3 cut(s) | 130, 139, 206 |
| DdeI | CTNAG | 2 cut(s) | 167, 506 |
| DpnI | GATC | 7 cut(s) | 53, 182, 189, 242, 290, 314, 481 |
| DpnII | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| EaeI | YGGCCR | 1 cut(s) | 82 |
| Eco31I | GGTCTC | 1 cut(s) | 140 |
| Eco57I | CTGAAG | 1 cut(s) | 212 |
| Eco88I | CYCGRG | 1 cut(s) | 609 |
| EcoRII | CCWGG | 1 cut(s) | 74 |
| Esp3I | CGTCTC | 1 cut(s) | 61 |
| FaeI | CATG | 4 cut(s) | 295, 443, 581, 624 |
| FaqI | GGGAC | 1 cut(s) | 355 |
| FatI | CATG | 4 cut(s) | 291, 439, 577, 620 |
| FauI | CCCGC | 1 cut(s) | 158 |
| FauNDI | CATATG | 1 cut(s) | 640 |
| FblI | GTMKAC | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 2 cut(s) | 257, 582 |
| FokI | GGATG | 3 cut(s) | 92, 248, 440 |
| Fsp4HI | GCNGC | 2 cut(s) | 257, 582 |
| GlaI | GCGC | 1 cut(s) | 178 |
| GluI | GCNGC | 2 cut(s) | 257, 582 |
| HaeIII | GGCC | 2 cut(s) | 84, 438 |
| HapII | CCGG | 3 cut(s) | 159, 339, 569 |
| HhaI | GCGC | 1 cut(s) | 179 |
| Hin1II | CATG | 4 cut(s) | 295, 443, 581, 624 |
| Hin6I | GCGC | 1 cut(s) | 177 |
| HinP1I | GCGC | 1 cut(s) | 177 |
| HindIII | AAGCTT | 1 cut(s) | 369 |
| HinfI | GANTC | 5 cut(s) | 13, 87, 467, 502, 545 |
| HpaII | CCGG | 3 cut(s) | 159, 339, 569 |
| HphI | GGTGA | 2 cut(s) | 148, 271 |
| Hpy166II | GTNNAC | 3 cut(s) | 139, 490, 589 |
| Hpy188I | TCNGA | 4 cut(s) | 192, 265, 550, 660 |
| Hpy188III | TCNNGA | 2 cut(s) | 292, 321 |
| Hpy8I | GTNNAC | 3 cut(s) | 139, 490, 589 |
| Hpy99I | CGWCG | 4 cut(s) | 95, 98, 233, 394 |
| HpyAV | CCTTC | 2 cut(s) | 187, 449 |
| HpyCH4III | ACNGT | 4 cut(s) | 111, 283, 494, 605 |
| HpyCH4IV | ACGT | 2 cut(s) | 231, 662 |
| HpyCH4V | TGCA | 3 cut(s) | 581, 626, 638 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 361, 377 |
| HpyF3I | CTNAG | 2 cut(s) | 167, 506 |
| HpySE526I | ACGT | 2 cut(s) | 231, 662 |
| Hsp92II | CATG | 4 cut(s) | 295, 443, 581, 624 |
| HspAI | GCGC | 1 cut(s) | 177 |
| Kzo9I | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| Lsp1109I | GCAGC | 1 cut(s) | 593 |
| LweI | GCATC | 3 cut(s) | 162, 418, 555 |
| MaeII | ACGT | 2 cut(s) | 231, 662 |
| MalI | GATC | 7 cut(s) | 53, 182, 189, 242, 290, 314, 481 |
| MboI | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| MboII | GAAGA | 2 cut(s) | 307, 574 |
| MflI | RGATCY | 2 cut(s) | 187, 479 |
| MhlI | GDGCHC | 1 cut(s) | 610 |
| MluCI | AATT | 1 cut(s) | 39 |
| MlyI | GAGTC | 1 cut(s) | 7 |
| MnlI | CCTC | 6 cut(s) | 385, 391, 418, 532, 565, 605 |
| MseI | TTAA | 3 cut(s) | 42, 648, 668 |
| MspI | CCGG | 3 cut(s) | 159, 339, 569 |
| MspR9I | CCNGG | 2 cut(s) | 76, 340 |
| Mva1269I | GAATGC | 1 cut(s) | 198 |
| MvaI | CCWGG | 1 cut(s) | 76 |
| MvnI | CGCG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 361, 377 |
| NciI | CCSGG | 1 cut(s) | 340 |
| NdeI | CATATG | 1 cut(s) | 640 |
| NdeII | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| NlaIII | CATG | 4 cut(s) | 295, 443, 581, 624 |
| NspI | RCATGY | 2 cut(s) | 581, 624 |
| PaeR7I | CTCGAG | 1 cut(s) | 609 |
| PagI | TCATGA | 1 cut(s) | 291 |
| PciI | ACATGT | 1 cut(s) | 620 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 389, 398 |
| PctI | GAATGC | 1 cut(s) | 198 |
| PfeI | GAWTC | 4 cut(s) | 87, 467, 502, 545 |
| PkrI | GCNGC | 2 cut(s) | 258, 583 |
| PleI | GAGTC | 1 cut(s) | 7 |
| PpsI | GAGTC | 1 cut(s) | 7 |
| PscI | ACATGT | 1 cut(s) | 620 |
| Psp6I | CCWGG | 1 cut(s) | 74 |
| PspGI | CCWGG | 1 cut(s) | 74 |
| PspXI | VCTCGAGB | 1 cut(s) | 609 |
| PsuI | RGATCY | 2 cut(s) | 187, 479 |
| RsaI | GTAC | 3 cut(s) | 131, 140, 207 |
| RsaNI | GTAC | 3 cut(s) | 130, 139, 206 |
| SaqAI | TTAA | 3 cut(s) | 42, 648, 668 |
| SatI | GCNGC | 2 cut(s) | 257, 582 |
| Sau3AI | GATC | 7 cut(s) | 51, 180, 187, 240, 288, 312, 479 |
| ScaI | AGTACT | 1 cut(s) | 131 |
| SchI | GAGTC | 1 cut(s) | 7 |
| ScrFI | CCNGG | 2 cut(s) | 76, 340 |
| SduI | GDGCHC | 1 cut(s) | 610 |
| SfaNI | GCATC | 3 cut(s) | 162, 418, 555 |
| Sfr274I | CTCGAG | 1 cut(s) | 609 |
| SlaI | CTCGAG | 1 cut(s) | 609 |
| SmlI | CTYRAG | 2 cut(s) | 432, 609 |
| SmoI | CTYRAG | 2 cut(s) | 432, 609 |
| Sse9I | AATT | 1 cut(s) | 39 |
| SsiI | CCGC | 2 cut(s) | 151, 257 |
| SspI | AATATT | 1 cut(s) | 517 |
| StyD4I | CCNGG | 2 cut(s) | 74, 338 |
| TaaI | ACNGT | 4 cut(s) | 111, 283, 494, 605 |
| TaiI | ACGT | 2 cut(s) | 234, 665 |
| TaqI | TCGA | 9 cut(s) | 126, 228, 249, 305, 311, 392, 401, 610, 617 |
| TasI | AATT | 1 cut(s) | 39 |
| TatI | WGTACW | 2 cut(s) | 129, 138 |
| TauI | GCSGC | 1 cut(s) | 259 |
| TfiI | GAWTC | 4 cut(s) | 87, 467, 502, 545 |
| Tru1I | TTAA | 3 cut(s) | 42, 648, 668 |
| Tru9I | TTAA | 3 cut(s) | 42, 648, 668 |
| TseI | GCWGC | 1 cut(s) | 581 |
| TspDTI | ATGAA | 3 cut(s) | 308, 319, 456 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| XceI | RCATGY | 2 cut(s) | 581, 624 |
| XhoI | CTCGAG | 1 cut(s) | 609 |
| XmiI | GTMKAC | 1 cut(s) | 489 |
| ZrmI | AGTACT | 1 cut(s) | 131 |