ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 824 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 668 |
| AccI | GTMKAC | 2 cut(s) | 89, 673 |
| AciI | CCGC | 2 cut(s) | 118, 422 |
| AclWI | GGATC | 2 cut(s) | 144, 449 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AdeI | CACNNNGTG | 1 cut(s) | 668 |
| AfaI | GTAC | 3 cut(s) | 129, 222, 608 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 217, 668, 814, 862, 915, 916 |
| AflIII | ACRYGT | 2 cut(s) | 372, 450 |
| AgsI | TTSAA | 2 cut(s) | 397, 797 |
| AjnI | CCWGG | 2 cut(s) | 556, 807 |
| AluBI | AGCT | 7 cut(s) | 159, 269, 365, 621, 707, 914, 978 |
| AluI | AGCT | 7 cut(s) | 159, 269, 365, 621, 707, 914, 978 |
| AlwI | GGATC | 2 cut(s) | 144, 449 |
| Ama87I | CYCGRG | 1 cut(s) | 264 |
| AoxI | GGCC | 4 cut(s) | 114, 774, 779, 943 |
| ApeKI | GCWGC | 1 cut(s) | 767 |
| AspLEI | GCGC | 1 cut(s) | 320 |
| AspS9I | GGNCC | 3 cut(s) | 115, 389, 775 |
| AsuC2I | CCSGG | 1 cut(s) | 778 |
| AsuHPI | GGTGA | 1 cut(s) | 446 |
| AsuNHI | GCTAGC | 1 cut(s) | 974 |
| AvaI | CYCGRG | 1 cut(s) | 264 |
| AvaII | GGWCC | 1 cut(s) | 389 |
| AxyI | CCTNAGG | 1 cut(s) | 216 |
| BaeGI | GKGCMC | 1 cut(s) | 311 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 212, 245 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 324, 356 |
| BbvCI | CCTCAGC | 1 cut(s) | 813 |
| BbvI | GCAGC | 1 cut(s) | 754 |
| BccI | CCATC | 3 cut(s) | 127, 686, 1019 |
| BceAI | ACGGC | 1 cut(s) | 1016 |
| BciT130I | CCWGG | 2 cut(s) | 558, 809 |
| BcnI | CCSGG | 1 cut(s) | 778 |
| BfaI | CTAG | 4 cut(s) | 156, 911, 915, 975 |
| BfmI | CTRYAG | 1 cut(s) | 622 |
| BfuAI | ACCTGC | 1 cut(s) | 824 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 809 |
| BisI | GCNGC | 1 cut(s) | 768 |
| BlsI | GCNGC | 1 cut(s) | 769 |
| Bme1390I | CCNGG | 3 cut(s) | 558, 778, 809 |
| Bme18I | GGWCC | 1 cut(s) | 389 |
| BmeT110I | CYCGRG | 1 cut(s) | 264 |
| BmgT120I | GGNCC | 3 cut(s) | 115, 389, 775 |
| BmiI | GGNNCC | 1 cut(s) | 390 |
| BmrFI | CCNGG | 3 cut(s) | 558, 778, 809 |
| BmsI | GCATC | 3 cut(s) | 155, 172, 325 |
| BmtI | GCTAGC | 1 cut(s) | 978 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 917, 949 |
| BpmI | CTGGAG | 1 cut(s) | 791 |
| Bpu10I | CCTNAGC | 1 cut(s) | 813 |
| BpuMI | CCSGG | 1 cut(s) | 778 |
| BsaAI | YACGTR | 2 cut(s) | 617, 830 |
| BsaBI | GATNNNNATC | 1 cut(s) | 206 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 1 cut(s) | 557 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 217, 668, 814, 862, 915, 916 |
| Bse1I | ACTGG | 2 cut(s) | 188, 321 |
| Bse21I | CCTNAGG | 1 cut(s) | 216 |
| Bse8I | GATNNNNATC | 1 cut(s) | 206 |
| BseBI | CCWGG | 2 cut(s) | 558, 809 |
| BseDI | CCNNGG | 1 cut(s) | 557 |
| BseGI | GGATG | 2 cut(s) | 55, 925 |
| BseJI | GATNNNNATC | 1 cut(s) | 206 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 217, 668, 814, 862, 915, 916 |
| BseMII | CTCAG | 3 cut(s) | 699, 804, 927 |
| BseNI | ACTGG | 2 cut(s) | 188, 321 |
| BseSI | GKGCMC | 1 cut(s) | 311 |
| BseXI | GCAGC | 1 cut(s) | 754 |
| BsgI | GTGCAG | 1 cut(s) | 852 |
| BshFI | GGCC | 4 cut(s) | 116, 776, 781, 945 |
| BsiHKCI | CYCGRG | 1 cut(s) | 264 |
| BsiSI | CCGG | 1 cut(s) | 778 |
| BslFI | GGGAC | 1 cut(s) | 439 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 217, 668, 814, 862, 915, 916 |
| BsmFI | GGGAC | 1 cut(s) | 439 |
| BsmI | GAATGC | 2 cut(s) | 415, 764 |
| BsnI | GGCC | 4 cut(s) | 116, 776, 781, 945 |
| BsoBI | CYCGRG | 1 cut(s) | 264 |
| Bsp1286I | GDGCHC | 1 cut(s) | 311 |
| Bsp1407I | TGTACA | 1 cut(s) | 127 |
| Bsp143I | GATC | 4 cut(s) | 136, 201, 441, 457 |
| BspACI | CCGC | 2 cut(s) | 118, 422 |
| BspANI | GGCC | 4 cut(s) | 116, 776, 781, 945 |
| BspCNI | CTCAG | 3 cut(s) | 700, 805, 928 |
| BspLI | GGNNCC | 1 cut(s) | 390 |
| BspMI | ACCTGC | 1 cut(s) | 824 |
| BspOI | GCTAGC | 1 cut(s) | 978 |
| BspPI | GGATC | 2 cut(s) | 144, 449 |
| BsrGI | TGTACA | 1 cut(s) | 127 |
| BsrI | ACTGG | 2 cut(s) | 188, 321 |
| BssECI | CCNNGG | 1 cut(s) | 557 |
| BssMI | GATC | 4 cut(s) | 136, 201, 441, 457 |
| BssNAI | GTATAC | 1 cut(s) | 90 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| Bst1107I | GTATAC | 1 cut(s) | 90 |
| Bst2UI | CCWGG | 2 cut(s) | 558, 809 |
| Bst4CI | ACNGT | 4 cut(s) | 94, 127, 739, 1013 |
| Bst6I | CTCTTC | 4 cut(s) | 588, 789, 918, 959 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstAUI | TGTACA | 1 cut(s) | 127 |
| BstBAI | YACGTR | 2 cut(s) | 617, 830 |
| BstC8I | GCNNGC | 3 cut(s) | 118, 161, 976 |
| BstDEI | CTNAG | 4 cut(s) | 216, 708, 813, 936 |
| BstF5I | GGATG | 2 cut(s) | 55, 925 |
| BstHHI | GCGC | 1 cut(s) | 320 |
| BstKTI | GATC | 4 cut(s) | 139, 204, 444, 460 |
| BstMBI | GATC | 4 cut(s) | 136, 201, 441, 457 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 315, 472, 773, 809 |
| BstNI | CCWGG | 2 cut(s) | 558, 809 |
| BstNSI | RCATGY | 3 cut(s) | 229, 376, 454 |
| BstSCI | CCNGG | 3 cut(s) | 556, 776, 807 |
| BstSFI | CTRYAG | 1 cut(s) | 622 |
| BstSLI | GKGCMC | 1 cut(s) | 311 |
| BstV1I | GCAGC | 1 cut(s) | 754 |
| BstZ17I | GTATAC | 1 cut(s) | 90 |
| Bsu36I | CCTNAGG | 1 cut(s) | 216 |
| BsuRI | GGCC | 4 cut(s) | 116, 776, 781, 945 |
| BtsCI | GGATG | 2 cut(s) | 55, 925 |
| BtsIMutI | CAGTG | 1 cut(s) | 328 |
| BveI | ACCTGC | 1 cut(s) | 824 |
| Cac8I | GCNNGC | 3 cut(s) | 118, 161, 976 |
| CfoI | GCGC | 1 cut(s) | 320 |
| Cfr13I | GGNCC | 3 cut(s) | 115, 389, 775 |
| CseI | GACGC | 1 cut(s) | 227 |
| Csp6I | GTAC | 3 cut(s) | 128, 221, 607 |
| CviQI | GTAC | 3 cut(s) | 128, 221, 607 |
| DdeI | CTNAG | 4 cut(s) | 216, 708, 813, 936 |
| DpnI | GATC | 4 cut(s) | 138, 203, 443, 459 |
| DpnII | GATC | 4 cut(s) | 136, 201, 441, 457 |
| DraIII | CACNNNGTG | 1 cut(s) | 668 |
| Eam1104I | CTCTTC | 4 cut(s) | 588, 789, 918, 959 |
| EarI | CTCTTC | 4 cut(s) | 588, 789, 918, 959 |
| Eco47I | GGWCC | 1 cut(s) | 389 |
| Eco81I | CCTNAGG | 1 cut(s) | 216 |
| Eco88I | CYCGRG | 1 cut(s) | 264 |
| EcoO109I | RGGNCCY | 1 cut(s) | 389 |
| EcoRII | CCWGG | 2 cut(s) | 556, 807 |
| EcoT22I | ATGCAT | 3 cut(s) | 340, 417, 764 |
| FaqI | GGGAC | 1 cut(s) | 439 |
| FauI | CCCGC | 2 cut(s) | 125, 415 |
| FauNDI | CATATG | 1 cut(s) | 275 |
| FblI | GTMKAC | 2 cut(s) | 89, 673 |
| Fnu4HI | GCNGC | 1 cut(s) | 768 |
| FokI | GGATG | 2 cut(s) | 62, 932 |
| Fsp4HI | GCNGC | 1 cut(s) | 768 |
| FspBI | CTAG | 4 cut(s) | 156, 911, 915, 975 |
| GlaI | GCGC | 1 cut(s) | 319 |
| GluI | GCNGC | 1 cut(s) | 768 |
| GsuI | CTGGAG | 1 cut(s) | 791 |
| HaeIII | GGCC | 4 cut(s) | 116, 776, 781, 945 |
| HapII | CCGG | 1 cut(s) | 778 |
| HgaI | GACGC | 1 cut(s) | 227 |
| HhaI | GCGC | 1 cut(s) | 320 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin6I | GCGC | 1 cut(s) | 318 |
| HinP1I | GCGC | 1 cut(s) | 318 |
| HincII | GTYRAC | 2 cut(s) | 370, 674 |
| HindII | GTYRAC | 2 cut(s) | 370, 674 |
| HinfI | GANTC | 3 cut(s) | 403, 821, 881 |
| HpaI | GTTAAC | 1 cut(s) | 370 |
| HpaII | CCGG | 1 cut(s) | 778 |
| HphI | GGTGA | 1 cut(s) | 446 |
| Hpy166II | GTNNAC | 3 cut(s) | 90, 370, 674 |
| Hpy188I | TCNGA | 4 cut(s) | 39, 141, 743, 937 |
| Hpy8I | GTNNAC | 3 cut(s) | 90, 370, 674 |
| HpyAV | CCTTC | 2 cut(s) | 277, 532 |
| HpyCH4III | ACNGT | 4 cut(s) | 94, 127, 739, 1013 |
| HpyCH4IV | ACGT | 3 cut(s) | 616, 637, 829 |
| HpyCH4V | TGCA | 7 cut(s) | 338, 415, 466, 614, 762, 770, 833 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 315, 472, 773, 809 |
| HpyF3I | CTNAG | 4 cut(s) | 216, 708, 813, 936 |
| HpySE526I | ACGT | 3 cut(s) | 616, 637, 829 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| HspAI | GCGC | 1 cut(s) | 318 |
| KspAI | GTTAAC | 1 cut(s) | 370 |
| Kzo9I | GATC | 4 cut(s) | 136, 201, 441, 457 |
| LmnI | GCTCC | 3 cut(s) | 297, 362, 472 |
| Lsp1109I | GCAGC | 1 cut(s) | 754 |
| LweI | GCATC | 3 cut(s) | 155, 172, 325 |
| MaeI | CTAG | 4 cut(s) | 156, 911, 915, 975 |
| MaeII | ACGT | 3 cut(s) | 616, 637, 829 |
| MaeIII | GTNAC | 2 cut(s) | 176, 733 |
| MalI | GATC | 4 cut(s) | 138, 203, 443, 459 |
| MboI | GATC | 4 cut(s) | 136, 201, 441, 457 |
| MboII | GAAGA | 9 cut(s) | 141, 199, 211, 344, 605, 776, 935, 976, 983 |
| MhlI | GDGCHC | 1 cut(s) | 311 |
| MluCI | AATT | 4 cut(s) | 10, 191, 355, 948 |
| MlyI | GAGTC | 1 cut(s) | 890 |
| MnlI | CCTC | 8 cut(s) | 536, 792, 808, 815, 859, 868, 919, 960 |
| Mph1103I | ATGCAT | 3 cut(s) | 340, 417, 764 |
| MseI | TTAA | 4 cut(s) | 32, 351, 369, 954 |
| MspI | CCGG | 1 cut(s) | 778 |
| MspR9I | CCNGG | 3 cut(s) | 558, 778, 809 |
| Mva1269I | GAATGC | 2 cut(s) | 415, 764 |
| MvaI | CCWGG | 2 cut(s) | 558, 809 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 315, 472, 773, 809 |
| NciI | CCSGG | 1 cut(s) | 778 |
| NdeI | CATATG | 1 cut(s) | 275 |
| NdeII | GATC | 4 cut(s) | 136, 201, 441, 457 |
| NheI | GCTAGC | 1 cut(s) | 974 |
| NlaIV | GGNNCC | 1 cut(s) | 390 |
| NmuCI | GTSAC | 1 cut(s) | 176 |
| NsiI | ATGCAT | 3 cut(s) | 340, 417, 764 |
| NspI | RCATGY | 3 cut(s) | 229, 376, 454 |
| PaeR7I | CTCGAG | 1 cut(s) | 264 |
| PciI | ACATGT | 2 cut(s) | 372, 450 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 425 |
| PctI | GAATGC | 2 cut(s) | 415, 764 |
| PfeI | GAWTC | 2 cut(s) | 403, 821 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 668 |
| PkrI | GCNGC | 1 cut(s) | 769 |
| PleI | GAGTC | 1 cut(s) | 889 |
| PpsI | GAGTC | 1 cut(s) | 889 |
| Ppu21I | YACGTR | 2 cut(s) | 617, 830 |
| PpuMI | RGGWCCY | 1 cut(s) | 389 |
| PscI | ACATGT | 2 cut(s) | 372, 450 |
| Psp5II | RGGWCCY | 1 cut(s) | 389 |
| Psp6I | CCWGG | 2 cut(s) | 556, 807 |
| PspGI | CCWGG | 2 cut(s) | 556, 807 |
| PspN4I | GGNNCC | 1 cut(s) | 390 |
| PspPI | GGNCC | 3 cut(s) | 115, 389, 775 |
| PspPPI | RGGWCCY | 1 cut(s) | 389 |
| PspXI | VCTCGAGB | 1 cut(s) | 264 |
| RsaI | GTAC | 3 cut(s) | 129, 222, 608 |
| RsaNI | GTAC | 3 cut(s) | 128, 221, 607 |
| SalI | GTCGAC | 1 cut(s) | 672 |
| SaqAI | TTAA | 4 cut(s) | 32, 351, 369, 954 |
| SatI | GCNGC | 1 cut(s) | 768 |
| Sau3AI | GATC | 4 cut(s) | 136, 201, 441, 457 |
| Sau96I | GGNCC | 3 cut(s) | 115, 389, 775 |
| SchI | GAGTC | 1 cut(s) | 890 |
| ScrFI | CCNGG | 3 cut(s) | 558, 778, 809 |
| SduI | GDGCHC | 1 cut(s) | 311 |
| SfaNI | GCATC | 3 cut(s) | 155, 172, 325 |
| SfcI | CTRYAG | 1 cut(s) | 622 |
| Sfr274I | CTCGAG | 1 cut(s) | 264 |
| SinI | GGWCC | 1 cut(s) | 389 |
| SlaI | CTCGAG | 1 cut(s) | 264 |
| SmlI | CTYRAG | 1 cut(s) | 264 |
| SmoI | CTYRAG | 1 cut(s) | 264 |
| Sse9I | AATT | 4 cut(s) | 10, 191, 355, 948 |
| SsiI | CCGC | 2 cut(s) | 118, 422 |
| SspMI | CTAG | 4 cut(s) | 156, 911, 915, 975 |
| StyD4I | CCNGG | 3 cut(s) | 556, 776, 807 |
| TaaI | ACNGT | 4 cut(s) | 94, 127, 739, 1013 |
| TaiI | ACGT | 3 cut(s) | 619, 640, 832 |
| TaqI | TCGA | 6 cut(s) | 72, 265, 456, 673, 703, 994 |
| TasI | AATT | 4 cut(s) | 10, 191, 355, 948 |
| TatI | WGTACW | 1 cut(s) | 127 |
| TfiI | GAWTC | 2 cut(s) | 403, 821 |
| Tru1I | TTAA | 4 cut(s) | 32, 351, 369, 954 |
| Tru9I | TTAA | 4 cut(s) | 32, 351, 369, 954 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TseFI | GTSAC | 1 cut(s) | 176 |
| TseI | GCWGC | 1 cut(s) | 767 |
| Tsp45I | GTSAC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 4 cut(s) | 141, 762, 781, 936 |
| TspRI | CASTG | 1 cut(s) | 328 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 668 |
| VpaK11BI | GGWCC | 1 cut(s) | 389 |
| XceI | RCATGY | 3 cut(s) | 229, 376, 454 |
| XhoI | CTCGAG | 1 cut(s) | 264 |
| XmiI | GTMKAC | 2 cut(s) | 89, 673 |
| XspI | CTAG | 4 cut(s) | 156, 911, 915, 975 |
| Zsp2I | ATGCAT | 3 cut(s) | 340, 417, 764 |