zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 37 - 105 | 1.5e-14 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 101, 233 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AflII | CTTAAG | 1 cut(s) | 221 |
| AluBI | AGCT | 1 cut(s) | 316 |
| AluI | AGCT | 1 cut(s) | 316 |
| Alw26I | GTCTC | 1 cut(s) | 201 |
| AlwI | GGATC | 2 cut(s) | 101, 233 |
| Ama87I | CYCGRG | 1 cut(s) | 21 |
| AsuHPI | GGTGA | 3 cut(s) | 25, 116, 248 |
| AvaI | CYCGRG | 1 cut(s) | 21 |
| BccI | CCATC | 1 cut(s) | 227 |
| BcoDI | GTCTC | 1 cut(s) | 201 |
| BfaI | CTAG | 3 cut(s) | 60, 152, 243 |
| BfrI | CTTAAG | 1 cut(s) | 221 |
| BmeT110I | CYCGRG | 1 cut(s) | 21 |
| BmsI | GCATC | 1 cut(s) | 70 |
| Bsa29I | ATCGAT | 1 cut(s) | 265 |
| BsaBI | GATNNNNATC | 1 cut(s) | 237 |
| Bse1I | ACTGG | 2 cut(s) | 11, 56 |
| Bse3DI | GCAATG | 1 cut(s) | 303 |
| Bse8I | GATNNNNATC | 1 cut(s) | 237 |
| BseCI | ATCGAT | 1 cut(s) | 265 |
| BseJI | GATNNNNATC | 1 cut(s) | 237 |
| BseMI | GCAATG | 1 cut(s) | 303 |
| BseNI | ACTGG | 2 cut(s) | 11, 56 |
| BshVI | ATCGAT | 1 cut(s) | 265 |
| BsiHKCI | CYCGRG | 1 cut(s) | 21 |
| BsmAI | GTCTC | 1 cut(s) | 201 |
| BsoBI | CYCGRG | 1 cut(s) | 21 |
| Bsp143I | GATC | 3 cut(s) | 106, 190, 238 |
| BspDI | ATCGAT | 1 cut(s) | 265 |
| BspHI | TCATGA | 1 cut(s) | 187 |
| BspPI | GGATC | 2 cut(s) | 101, 233 |
| BspTI | CTTAAG | 1 cut(s) | 221 |
| BsrDI | GCAATG | 1 cut(s) | 303 |
| BsrI | ACTGG | 2 cut(s) | 11, 56 |
| BssMI | GATC | 3 cut(s) | 106, 190, 238 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 135 |
| BstAFI | CTTAAG | 1 cut(s) | 221 |
| BstDEI | CTNAG | 1 cut(s) | 312 |
| BstKTI | GATC | 3 cut(s) | 109, 193, 241 |
| BstMAI | GTCTC | 1 cut(s) | 201 |
| BstMBI | GATC | 3 cut(s) | 106, 190, 238 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| Bsu15I | ATCGAT | 1 cut(s) | 265 |
| BsuTUI | ATCGAT | 1 cut(s) | 265 |
| CciI | TCATGA | 1 cut(s) | 187 |
| ClaI | ATCGAT | 1 cut(s) | 265 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 1 cut(s) | 188 |
| CviJI | RGCY | 2 cut(s) | 20, 316 |
| CviKI_1 | RGCY | 2 cut(s) | 20, 316 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 1 cut(s) | 312 |
| DpnI | GATC | 3 cut(s) | 108, 192, 240 |
| DpnII | GATC | 3 cut(s) | 106, 190, 238 |
| DraI | TTTAAA | 1 cut(s) | 115 |
| Eco88I | CYCGRG | 1 cut(s) | 21 |
| FaeI | CATG | 1 cut(s) | 191 |
| FaiI | YATR | 6 cut(s) | 29, 49, 124, 171, 189, 231 |
| FatI | CATG | 1 cut(s) | 187 |
| FspBI | CTAG | 3 cut(s) | 60, 152, 243 |
| Hin1II | CATG | 1 cut(s) | 191 |
| HincII | GTYRAC | 1 cut(s) | 260 |
| HindII | GTYRAC | 1 cut(s) | 260 |
| HphI | GGTGA | 3 cut(s) | 25, 116, 248 |
| Hpy166II | GTNNAC | 2 cut(s) | 33, 260 |
| Hpy188III | TCNNGA | 1 cut(s) | 188 |
| Hpy8I | GTNNAC | 2 cut(s) | 33, 260 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 135 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 1 cut(s) | 312 |
| Hsp92II | CATG | 1 cut(s) | 191 |
| Kzo9I | GATC | 3 cut(s) | 106, 190, 238 |
| LpnPI | CCDG | 2 cut(s) | 27, 37 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 3 cut(s) | 60, 152, 243 |
| MaeIII | GTNAC | 1 cut(s) | 216 |
| MalI | GATC | 3 cut(s) | 108, 192, 240 |
| MboI | GATC | 3 cut(s) | 106, 190, 238 |
| MboII | GAAGA | 2 cut(s) | 139, 284 |
| MluCI | AATT | 1 cut(s) | 252 |
| MnlI | CCTC | 2 cut(s) | 10, 17 |
| MseI | TTAA | 4 cut(s) | 39, 74, 114, 222 |
| MspCI | CTTAAG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NdeII | GATC | 3 cut(s) | 106, 190, 238 |
| NlaIII | CATG | 1 cut(s) | 191 |
| PaeR7I | CTCGAG | 1 cut(s) | 21 |
| PagI | TCATGA | 1 cut(s) | 187 |
| PspXI | VCTCGAGB | 1 cut(s) | 21 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 4 cut(s) | 39, 74, 114, 222 |
| Sau3AI | GATC | 3 cut(s) | 106, 190, 238 |
| SetI | ASST | 3 cut(s) | 28, 202, 318 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| Sfr274I | CTCGAG | 1 cut(s) | 21 |
| SlaI | CTCGAG | 1 cut(s) | 21 |
| SmlI | CTYRAG | 2 cut(s) | 21, 221 |
| SmoI | CTYRAG | 2 cut(s) | 21, 221 |
| Sse9I | AATT | 1 cut(s) | 252 |
| SspMI | CTAG | 3 cut(s) | 60, 152, 243 |
| TaaI | ACNGT | 2 cut(s) | 37, 135 |
| TaqI | TCGA | 2 cut(s) | 22, 265 |
| TasI | AATT | 1 cut(s) | 252 |
| TatI | WGTACW | 1 cut(s) | 3 |
| Tru1I | TTAA | 4 cut(s) | 39, 74, 114, 222 |
| Tru9I | TTAA | 4 cut(s) | 39, 74, 114, 222 |
| Vha464I | CTTAAG | 1 cut(s) | 221 |
| XhoI | CTCGAG | 1 cut(s) | 21 |
| XspI | CTAG | 3 cut(s) | 60, 152, 243 |