Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 364 |
| AciI | CCGC | 1 cut(s) | 300 |
| AclWI | GGATC | 2 cut(s) | 302, 315 |
| AcoI | YGGCCR | 1 cut(s) | 141 |
| AcuI | CTGAAG | 1 cut(s) | 516 |
| AcvI | CACGTG | 1 cut(s) | 289 |
| AcyI | GRCGYC | 1 cut(s) | 532 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 266, 450 |
| AflIII | ACRYGT | 2 cut(s) | 286, 604 |
| AgsI | TTSAA | 2 cut(s) | 122, 487 |
| AluBI | AGCT | 6 cut(s) | 151, 221, 244, 436, 479, 515 |
| AluI | AGCT | 6 cut(s) | 151, 221, 244, 436, 479, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 255 |
| Alw44I | GTGCAC | 1 cut(s) | 251 |
| AlwI | GGATC | 2 cut(s) | 302, 315 |
| AoxI | GGCC | 2 cut(s) | 141, 465 |
| ApaLI | GTGCAC | 1 cut(s) | 251 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 276, 308 |
| AsuC2I | CCSGG | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 1 cut(s) | 587 |
| BaeGI | GKGCMC | 2 cut(s) | 255, 369 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 64, 97, 329, 362 |
| BalI | TGGCCA | 1 cut(s) | 143 |
| BamHI | GGATCC | 1 cut(s) | 307 |
| BanI | GGYRCC | 1 cut(s) | 364 |
| BbrPI | CACGTG | 1 cut(s) | 289 |
| BbsI | GAAGAC | 2 cut(s) | 74, 113 |
| Bbv12I | GWGCWC | 1 cut(s) | 255 |
| BcnI | CCSGG | 1 cut(s) | 369 |
| BfaI | CTAG | 3 cut(s) | 341, 383, 512 |
| Bme1390I | CCNGG | 1 cut(s) | 369 |
| BmiI | GGNNCC | 2 cut(s) | 309, 366 |
| BmrFI | CCNGG | 1 cut(s) | 369 |
| BmsI | GCATC | 4 cut(s) | 181, 397, 481, 621 |
| BpiI | GAAGAC | 2 cut(s) | 74, 113 |
| BpuEI | CTTGAG | 1 cut(s) | 201 |
| BpuMI | CCSGG | 1 cut(s) | 369 |
| BsaAI | YACGTR | 1 cut(s) | 289 |
| BsaHI | GRCGYC | 1 cut(s) | 532 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 36, 66 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 266, 450 |
| Bse3DI | GCAATG | 1 cut(s) | 549 |
| BseGI | GGATG | 2 cut(s) | 28, 636 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 266, 450 |
| BseMI | GCAATG | 1 cut(s) | 549 |
| BseMII | CTCAG | 1 cut(s) | 408 |
| BseRI | GAGGAG | 1 cut(s) | 285 |
| BseSI | GKGCMC | 2 cut(s) | 255, 369 |
| BsgI | GTGCAG | 2 cut(s) | 38, 204 |
| BshFI | GGCC | 2 cut(s) | 143, 467 |
| BshNI | GGYRCC | 1 cut(s) | 364 |
| BsiHKAI | GWGCWC | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 369 |
| BslFI | GGGAC | 2 cut(s) | 297, 473 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 266, 450 |
| BsmFI | GGGAC | 2 cut(s) | 297, 473 |
| BsnI | GGCC | 2 cut(s) | 143, 467 |
| Bsp1286I | GDGCHC | 2 cut(s) | 255, 369 |
| Bsp143I | GATC | 1 cut(s) | 307 |
| BspACI | CCGC | 1 cut(s) | 300 |
| BspANI | GGCC | 2 cut(s) | 143, 467 |
| BspCNI | CTCAG | 1 cut(s) | 407 |
| BspHI | TCATGA | 1 cut(s) | 64 |
| BspLI | GGNNCC | 2 cut(s) | 309, 366 |
| BspPI | GGATC | 2 cut(s) | 302, 315 |
| BspQI | GCTCTTC | 1 cut(s) | 228 |
| BspT107I | GGYRCC | 1 cut(s) | 364 |
| BsrDI | GCAATG | 1 cut(s) | 549 |
| BssMI | GATC | 1 cut(s) | 307 |
| BssNI | GRCGYC | 1 cut(s) | 532 |
| Bst6I | CTCTTC | 1 cut(s) | 228 |
| BstACI | GRCGYC | 1 cut(s) | 532 |
| BstBAI | YACGTR | 1 cut(s) | 289 |
| BstC8I | GCNNGC | 1 cut(s) | 187 |
| BstDEI | CTNAG | 2 cut(s) | 176, 394 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 448 |
| BstF5I | GGATG | 2 cut(s) | 28, 636 |
| BstKTI | GATC | 1 cut(s) | 310 |
| BstMBI | GATC | 1 cut(s) | 307 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 169, 250, 373, 512, 538 |
| BstNSI | RCATGY | 1 cut(s) | 608 |
| BstSCI | CCNGG | 1 cut(s) | 367 |
| BstSLI | GKGCMC | 2 cut(s) | 255, 369 |
| BstV2I | GAAGAC | 2 cut(s) | 74, 113 |
| BstX2I | RGATCY | 1 cut(s) | 307 |
| BstYI | RGATCY | 1 cut(s) | 307 |
| BsuRI | GGCC | 2 cut(s) | 143, 467 |
| BtsCI | GGATG | 2 cut(s) | 28, 636 |
| Cac8I | GCNNGC | 1 cut(s) | 187 |
| CciI | TCATGA | 1 cut(s) | 64 |
| CseI | GACGC | 1 cut(s) | 521 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 75, 110 |
| CviAII | CATG | 5 cut(s) | 65, 92, 542, 555, 605 |
| DdeI | CTNAG | 2 cut(s) | 176, 394 |
| DpnI | GATC | 1 cut(s) | 309 |
| DpnII | GATC | 1 cut(s) | 307 |
| DraI | TTTAAA | 1 cut(s) | 618 |
| EaeI | YGGCCR | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 228 |
| Eco57I | CTGAAG | 1 cut(s) | 516 |
| Eco72I | CACGTG | 1 cut(s) | 289 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 448 |
| FaeI | CATG | 5 cut(s) | 68, 95, 545, 558, 608 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 122, 154 |
| FaqI | GGGAC | 2 cut(s) | 297, 473 |
| FatI | CATG | 5 cut(s) | 64, 91, 541, 554, 604 |
| FokI | GGATG | 2 cut(s) | 35, 643 |
| FspBI | CTAG | 3 cut(s) | 341, 383, 512 |
| HaeIII | GGCC | 2 cut(s) | 143, 467 |
| HapII | CCGG | 1 cut(s) | 369 |
| HgaI | GACGC | 1 cut(s) | 521 |
| Hin1I | GRCGYC | 1 cut(s) | 532 |
| Hin1II | CATG | 5 cut(s) | 68, 95, 545, 558, 608 |
| HindIII | AAGCTT | 1 cut(s) | 149 |
| HinfI | GANTC | 1 cut(s) | 59 |
| HpaII | CCGG | 1 cut(s) | 369 |
| HphI | GGTGA | 1 cut(s) | 587 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 253 |
| Hpy188I | TCNGA | 1 cut(s) | 13 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 305, 396, 641 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 253 |
| HpyAV | CCTTC | 2 cut(s) | 266, 393 |
| HpyCH4IV | ACGT | 1 cut(s) | 288 |
| HpyCH4V | TGCA | 7 cut(s) | 19, 113, 185, 253, 388, 541, 554 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 169, 250, 373, 512, 538 |
| HpyF3I | CTNAG | 2 cut(s) | 176, 394 |
| HpySE526I | ACGT | 1 cut(s) | 288 |
| Hsp92I | GRCGYC | 1 cut(s) | 532 |
| Hsp92II | CATG | 5 cut(s) | 68, 95, 545, 558, 608 |
| Kzo9I | GATC | 1 cut(s) | 307 |
| LguI | GCTCTTC | 1 cut(s) | 228 |
| LmnI | GCTCC | 1 cut(s) | 272 |
| LpnPI | CCDG | 5 cut(s) | 5, 171, 290, 381, 382 |
| LweI | GCATC | 4 cut(s) | 181, 397, 481, 621 |
| MaeI | CTAG | 3 cut(s) | 341, 383, 512 |
| MaeII | ACGT | 1 cut(s) | 288 |
| MalI | GATC | 1 cut(s) | 309 |
| MboI | GATC | 1 cut(s) | 307 |
| MboII | GAAGA | 5 cut(s) | 74, 111, 118, 215, 346 |
| MflI | RGATCY | 1 cut(s) | 307 |
| MhlI | GDGCHC | 2 cut(s) | 255, 369 |
| MlsI | TGGCCA | 1 cut(s) | 143 |
| MluCI | AATT | 4 cut(s) | 157, 201, 357, 560 |
| MluNI | TGGCCA | 1 cut(s) | 143 |
| MmeI | TCCRAC | 2 cut(s) | 110, 251 |
| MnlI | CCTC | 9 cut(s) | 7, 43, 263, 345, 454, 457, 496, 621, 648 |
| Mox20I | TGGCCA | 1 cut(s) | 143 |
| MscI | TGGCCA | 1 cut(s) | 143 |
| MseI | TTAA | 5 cut(s) | 38, 153, 474, 588, 617 |
| MslI | CAYNNNNRTG | 2 cut(s) | 177, 419 |
| Msp20I | TGGCCA | 1 cut(s) | 143 |
| MspI | CCGG | 1 cut(s) | 369 |
| MspR9I | CCNGG | 1 cut(s) | 369 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 169, 250, 373, 512, 538 |
| NciI | CCSGG | 1 cut(s) | 369 |
| NdeII | GATC | 1 cut(s) | 307 |
| NlaIII | CATG | 5 cut(s) | 68, 95, 545, 558, 608 |
| NlaIV | GGNNCC | 2 cut(s) | 309, 366 |
| NmeAIII | GCCGAG | 1 cut(s) | 508 |
| NspI | RCATGY | 1 cut(s) | 608 |
| PagI | TCATGA | 1 cut(s) | 64 |
| PciI | ACATGT | 1 cut(s) | 604 |
| PciSI | GCTCTTC | 1 cut(s) | 228 |
| PfeI | GAWTC | 1 cut(s) | 59 |
| PmaCI | CACGTG | 1 cut(s) | 289 |
| PmlI | CACGTG | 1 cut(s) | 289 |
| Ppu21I | YACGTR | 1 cut(s) | 289 |
| PscI | ACATGT | 1 cut(s) | 604 |
| PspCI | CACGTG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 2 cut(s) | 309, 366 |
| PsuI | RGATCY | 1 cut(s) | 307 |
| RseI | CAYNNNNRTG | 2 cut(s) | 177, 419 |
| SapI | GCTCTTC | 1 cut(s) | 228 |
| SaqAI | TTAA | 5 cut(s) | 38, 153, 474, 588, 617 |
| Sau3AI | GATC | 1 cut(s) | 307 |
| ScrFI | CCNGG | 1 cut(s) | 369 |
| SduI | GDGCHC | 2 cut(s) | 255, 369 |
| SfaNI | GCATC | 4 cut(s) | 181, 397, 481, 621 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 177, 419 |
| SmlI | CTYRAG | 1 cut(s) | 216 |
| SmoI | CTYRAG | 1 cut(s) | 216 |
| Sse9I | AATT | 4 cut(s) | 157, 201, 357, 560 |
| SsiI | CCGC | 1 cut(s) | 300 |
| SspMI | CTAG | 3 cut(s) | 341, 383, 512 |
| StyD4I | CCNGG | 1 cut(s) | 367 |
| TaiI | ACGT | 1 cut(s) | 291 |
| TasI | AATT | 4 cut(s) | 157, 201, 357, 560 |
| TfiI | GAWTC | 1 cut(s) | 59 |
| Tru1I | TTAA | 5 cut(s) | 38, 153, 474, 588, 617 |
| Tru9I | TTAA | 5 cut(s) | 38, 153, 474, 588, 617 |
| TspDTI | ATGAA | 1 cut(s) | 39 |
| VneI | GTGCAC | 1 cut(s) | 251 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 448 |
| XceI | RCATGY | 1 cut(s) | 608 |
| XspI | CTAG | 3 cut(s) | 341, 383, 512 |